CV884458

Overview
NameCV884458
Unique NameCV884458
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length944
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884458 vs. ExPASy Swiss-Prot
Match: EF1G2_YEAST (Elongation factor 1-gamma 2 OS=Saccharomyces cerevisiae GN=TEF4 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 6.970e-23
Identity = 62/156 (39.74%), Postives = 87/156 (55.77%), Query Frame = -1
Query:  162 SKMILDDWKRLYSNTKSNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVSGFLQRMDLARKYAFGKMLIIGNEPPYKVKGLWLFRGPEI-PKFVMDECYDMELYDWKKADISDEEQKERVNQMIEDHEPF----EGEALLDAKCFK 614
            S  +LDDWKR YSN  +  R VA+  FW+ Y+PE YS+W   YKYNDE T++F++ N V GF  R+  + KY FG +++ G      + G  + RG +  P F  D   D E Y++ K D + EE KE VN M    +P     E + ++D K  K
Sbjct:  261 STFVLDDWKRKYSNDDT--RPVALPWFWEHYNPEEYSIWKVGYKYNDELTLTFMSNNLVGGFFNRLSASTKYMFGCLVVYGENNNNGIVGAVMVRGQDFAPAF--DVAPDWESYEYTKLDPTKEEDKEFVNNMWAWDKPVVVNGEDKEIVDGKVLK 412          
BLAST of CV884458 vs. ExPASy Swiss-Prot
Match: EF1G_DANRE (Elongation factor 1-gamma OS=Danio rerio GN=eef1g PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.459e-22
Identity = 50/143 (34.97%), Postives = 88/143 (61.54%), Query Frame = -1
Query:  189 SKMILDDWKRLYSNTKSNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVSGFLQRMDLARKYAFGKMLIIGNEPPYKVKGLWLFRGPEIPKFVMDEC-YDMELYDWKKADISDEEQKERVNQMIEDHEPFEGE 614
            S  ++D++KR YSN  +    VA+  FWD +D EG+S+W+ +Y++ +E T++F++ N ++G  QR+D  RK AF  +++ G      + G+W+FRG ++   + D+   D E Y W+K D+  EE K     M++++  +EGE
Sbjct:  291 SSFVMDEFKRKYSNEDT--MTVALPYFWDHFDREGFSIWYAEYRFPEELTMAFMSCNLITGMFQRLDKLRKNAFASVILFGANNDSCISGIWVFRGQDLAFPLSDDWQIDYESYTWRKLDVDSEECK----TMVKEYFAWEGE 427          
BLAST of CV884458 vs. ExPASy Swiss-Prot
Match: EF1G_RABIT (Elongation factor 1-gamma OS=Oryctolagus cuniculus GN=EEF1G PE=2 SV=3)

HSP 1 Score: 104.76 bits (260), Expect = 7.706e-22
Identity = 74/281 (26.33%), Postives = 119/281 (42.35%), Query Frame = -1
Query:  162 LADIVMICNLYYGLKHIMTKTFTSEFPHVERY---------FWTVANQPKIKKFLGDF---KQAES-----VPAVQSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSKMILDDWKRLYSNTKSNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVSGFLQRMDLARKYAFGKMLIIGNEPPYKVKGLWLFRGPEIP-KFVMDECYDMELYDWKKADISDEEQKERVNQMIEDHEPFE--GEALLDAKCFK 944
            LADI ++C L +  K ++  +F   FP+  R+         F  V  + K+ + +  F   K AES      P  +                                                   S  +LD++KR YSN  +    VA+  FW+ +D +G+SLW+ +Y++ +E T +F++ N ++G  QR+D  RK AF  +++ G      + G+W+FRG E+      D   D E Y W+K D S EE +  V +       F+  G+A    K FK
Sbjct:  159 LADITVVCTLLWLYKQVLEPSFRQAFPNTNRWFLTCINQPQFRAVLGEVKLCEKMAQFDAKKFAESQPKKDTPRKEKGSREEKQKPQAERKEEKKAAAPAPEEEMDECEQALAAEPKAKDPFAHLPKSTFVLDEFKRKYSNEDT--LSVALPYFWEHFDKDGWSLWYAEYRFPEELTQTFMSCNLITGMFQRLDKLRKNAFASVILFGTNNSSSISGIWVFRGQELAFPLSPDWQVDYESYTWRKLDPSSEETQTLVREYFAWEGAFQHVGKAFNQGKVFK 437          
BLAST of CV884458 vs. ExPASy Swiss-Prot
Match: EF1G_MOUSE (Elongation factor 1-gamma OS=Mus musculus GN=Eef1g PE=1 SV=3)

HSP 1 Score: 103.219 bits (256), Expect = 2.242e-21
Identity = 72/281 (25.62%), Postives = 119/281 (42.35%), Query Frame = -1
Query:  162 LADIVMICNLYYGLKHIMTKTFTSEFPHVERY---------FWTVANQPKIKKFLGDF---KQAES-----VPAVQSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSKMILDDWKRLYSNTKSNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVSGFLQRMDLARKYAFGKMLIIGNEPPYKVKGLWLFRGPEIP-KFVMDECYDMELYDWKKADISDEEQKERVNQMIEDHEPFE--GEALLDAKCFK 944
            LADI ++C L +  K ++  +F   FP+  R+         F  +  + K+ + +  F   K AES      P  +                                                   S  +LD++KR YSN  +    VA+  FW+ +D +G+SLW+ +Y++ +E T +F++ N ++G  QR+D  RK AF  +++ G      + G+W+FRG E+      D   D E Y W+K D   EE +  V +       F+  G+A+   K FK
Sbjct:  159 LADITVVCTLLWLYKQVLEPSFRQAFPNTNRWFLTCINQPQFRAILGEVKLCEKMAQFDAKKFAESQPKKDTPRKEKGSREEKQKPQAERKEEKKAAAPAPEEEMDECEQALAAEPKAKDPFAHLPKSTFVLDEFKRKYSNEDT--LSVALPYFWEHFDKDGWSLWYAEYRFPEELTQTFMSCNLITGMFQRLDKLRKNAFASVILFGTNNSSSISGVWVFRGQELAFPLSPDWQVDYESYTWRKLDPGSEETQTLVREYFSWEGTFQHVGKAVNQGKIFK 437          
BLAST of CV884458 vs. ExPASy Swiss-Prot
Match: EF1G_HORSE (Elongation factor 1-gamma OS=Equus caballus GN=EEF1G PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.928e-21
Identity = 73/281 (25.98%), Postives = 118/281 (41.99%), Query Frame = -1
Query:  162 LADIVMICNLYYGLKHIMTKTFTSEFPHVERY---------FWTVANQPKIKKFLGDF---KQAES-----VPAVQSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSKMILDDWKRLYSNTKSNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVSGFLQRMDLARKYAFGKMLIIGNEPPYKVKGLWLFRGPEIP-KFVMDECYDMELYDWKKADISDEEQKERVNQMIEDHEPFE--GEALLDAKCFK 944
            LADI ++C L +  K ++  +F   FP+  R+         F  V  + K+ + +  F   K AES      P  +                                                   S  +LD++KR YSN  +    VA+  FW+ +D +G+SLW+ +Y++ +E T +F++ N ++G  QR+D  RK AF  +++ G      + G+W+FRG E+      D   D E Y W+K D   EE +  V +       F+  G+A    K FK
Sbjct:  159 LADITVVCTLLWLYKQVLEPSFRQAFPNTNRWFLTCINQPQFRAVLGEVKLCEKMAQFDAKKFAESQPKKDTPRKEKGSREEKQKPQAERKEEKKAAAPAPEEEMDECEQALAAEPKAKDPFAHLPKSTFVLDEFKRKYSNEDT--LSVALPYFWEHFDKDGWSLWYSEYRFPEELTQTFMSCNLITGMFQRLDKLRKNAFASVILFGTNNSSSISGVWVFRGQELAFPLSPDWQVDYESYTWRKLDPGSEEAQTLVREYFSWEGAFQHVGKAFNQGKIFK 437          
BLAST of CV884458 vs. ExPASy Swiss-Prot
Match: EF1G_RAT (Elongation factor 1-gamma OS=Rattus norvegicus GN=Eef1g PE=2 SV=3)

HSP 1 Score: 102.064 bits (253), Expect = 4.995e-21
Identity = 71/281 (25.27%), Postives = 119/281 (42.35%), Query Frame = -1
Query:  162 LADIVMICNLYYGLKHIMTKTFTSEFPHVERY---------FWTVANQPKIKKFLGDF---KQAES-----VPAVQSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSKMILDDWKRLYSNTKSNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVSGFLQRMDLARKYAFGKMLIIGNEPPYKVKGLWLFRGPEIP-KFVMDECYDMELYDWKKADISDEEQKERVNQMIEDHEPFE--GEALLDAKCFK 944
            LADI ++C L +  K ++  +F   FP+  R+         F  +  + K+ + +  F   K AES      P  +                                                   S  +LD++KR YSN  +    VA+  FW+ +D +G+SLW+ +Y++ +E T +F++ N ++G  QR+D  RK AF  +++ G      + G+W+FRG ++      D   D E Y W+K D   EE +  V +       F+  G+A+   K FK
Sbjct:  159 LADITVVCTLLWLYKQVLEPSFRQAFPNTNRWFLTCINQPQFRAILGEVKLCEKMAQFDAKKFAESQPKKDTPRKEKGSREEKQKPQTERKEEKKAAAPAPEEEMDECEQALAAEPKAKDPFAHLPKSTFVLDEFKRKYSNEDT--LSVALPYFWEHFDKDGWSLWYAEYRFPEELTQTFMSCNLITGMFQRLDKLRKNAFASVILFGTNNSSSISGVWVFRGQDLAFPLSPDWQVDYESYTWRKLDPGSEETQTLVREYFSWEGAFQHVGKAVNQGKIFK 437          
BLAST of CV884458 vs. ExPASy Swiss-Prot
Match: EF1G_MACFA (Elongation factor 1-gamma OS=Macaca fascicularis GN=EEF1G PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.995e-21
Identity = 53/154 (34.42%), Postives = 85/154 (55.19%), Query Frame = -1
Query:  162 SKMILDDWKRLYSNTKSNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVSGFLQRMDLARKYAFGKMLIIGNEPPYKVKGLWLFRGPEIP-KFVMDECYDMELYDWKKADISDEEQKERVNQMIEDHEPFE--GEALLDAKCFK 614
            S  +LD++KR YSN  +    VA+  FW+ +D +G+SLW+ +Y++ +E T +F++ N ++G  QR+D  RK AF  +++ G      + G+W+FRG E+      D   D E Y W+K D   EE +  V +       F+  G+A    K FK
Sbjct:  286 STFVLDEFKRKYSNEDT--LSVALPYFWEHFDKDGWSLWYSEYRFPEELTQTFMSCNLITGMFQRLDKLRKNAFASVILFGTNNSSSISGVWVFRGQELAFPLSPDWQVDYESYTWRKLDPGSEETQTLVREYFSWEGAFQHVGKAFNQGKIFK 437          
BLAST of CV884458 vs. ExPASy Swiss-Prot
Match: EF1G_HUMAN (Elongation factor 1-gamma OS=Homo sapiens GN=EEF1G PE=1 SV=3)

HSP 1 Score: 102.064 bits (253), Expect = 4.995e-21
Identity = 53/154 (34.42%), Postives = 85/154 (55.19%), Query Frame = -1
Query:  162 SKMILDDWKRLYSNTKSNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVSGFLQRMDLARKYAFGKMLIIGNEPPYKVKGLWLFRGPEIP-KFVMDECYDMELYDWKKADISDEEQKERVNQMIEDHEPFE--GEALLDAKCFK 614
            S  +LD++KR YSN  +    VA+  FW+ +D +G+SLW+ +Y++ +E T +F++ N ++G  QR+D  RK AF  +++ G      + G+W+FRG E+      D   D E Y W+K D   EE +  V +       F+  G+A    K FK
Sbjct:  286 STFVLDEFKRKYSNEDT--LSVALPYFWEHFDKDGWSLWYSEYRFPEELTQTFMSCNLITGMFQRLDKLRKNAFASVILFGTNNSSSISGVWVFRGQELAFPLSPDWQVDYESYTWRKLDPGSEETQTLVREYFSWEGAFQHVGKAFNQGKIFK 437          
BLAST of CV884458 vs. ExPASy Swiss-Prot
Match: EF1GA_XENLA (Elongation factor 1-gamma-A OS=Xenopus laevis GN=eef1g-A PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.995e-21
Identity = 50/144 (34.72%), Postives = 87/144 (60.42%), Query Frame = -1
Query:  189 SKMILDDWKRLYSNTKSNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVSGFLQRMDLARKYAFGKMLIIGNEPPYKVKGLWLFRGPEIPKFVMDECY--DMELYDWKKADISDEEQKERVNQMIEDHEPFEGE 614
            S  I+D++KR YSN  +    VA+  FW+ +D EG+S+W+ +YK+ +E T +F++ N ++G  QR+D  RK  F  +++ G      + G+W+FRG ++  F + E +  D E Y+W+K D   EE K     +++++  +EGE
Sbjct:  285 SSFIMDEFKRKYSNEDT--LTVALPYFWEHFDKEGWSIWYAEYKFPEELTQAFMSCNLITGMFQRLDKLRKTGFASVILFGTNNNSSISGVWVFRGQDL-AFTLSEDWQIDYESYNWRKLDSGSEECK----TLVKEYFAWEGE 421          
BLAST of CV884458 vs. ExPASy Swiss-Prot
Match: EF1G_PIG (Elongation factor 1-gamma (Fragment) OS=Sus scrofa GN=EEF1G PE=2 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 6.524e-21
Identity = 72/281 (25.62%), Postives = 118/281 (41.99%), Query Frame = -1
Query:  162 LADIVMICNLYYGLKHIMTKTFTSEFPHVERY---------FWTVANQPKIKKFLGDF---KQAES-----VPAVQSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSKMILDDWKRLYSNTKSNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVSGFLQRMDLARKYAFGKMLIIGNEPPYKVKGLWLFRGPEIP-KFVMDECYDMELYDWKKADISDEEQKERVNQMIEDHEPFE--GEALLDAKCFK 944
            LADI ++C L +  K ++  +F   FP+  R+         F  V  + K+ + +  F   K AES      P  +                                                   S  +LD++KR YSN  +    VA+  FW+ +D +G+SLW+ +Y++ +E T +F++ N ++G  QR+D  RK AF  +++ G      + G+W+FRG E+      D   D E Y W+K D   EE +  V +       ++  G+A    K FK
Sbjct:  154 LADITVVCTLLWLYKQVLEPSFRQAFPNTNRWFLTCINQPQFRAVLGEVKLCEKMAQFDAKKFAESQPKKDTPRKEKGSREEKQKPQAERKEEKKAAAPAPEEELDECEQALAAEPKAKDPFAHLPKSTFVLDEFKRKYSNEDT--LSVALPYFWEHFDKDGWSLWYSEYRFPEELTQTFMSCNLITGMFQRLDKLRKNAFASVILFGTNNSSSISGVWVFRGQELAFPLSPDWQVDYESYTWRKLDPGSEETQTLVREYFSWEGAYQHVGKAFNQGKIFK 432          
The following BLAST results are available for this feature:
BLAST of CV884458 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
EF1G2_YEAST6.970e-2339.74Elongation factor 1-gamma 2 OS=Saccharomyces cerev... [more]
EF1G_DANRE3.459e-2234.97Elongation factor 1-gamma OS=Danio rerio GN=eef1g ... [more]
EF1G_RABIT7.706e-2226.33Elongation factor 1-gamma OS=Oryctolagus cuniculus... [more]
EF1G_MOUSE2.242e-2125.62Elongation factor 1-gamma OS=Mus musculus GN=Eef1g... [more]
EF1G_HORSE2.928e-2125.98Elongation factor 1-gamma OS=Equus caballus GN=EEF... [more]
EF1G_RAT4.995e-2125.27Elongation factor 1-gamma OS=Rattus norvegicus GN=... [more]
EF1G_MACFA4.995e-2134.42Elongation factor 1-gamma OS=Macaca fascicularis G... [more]
EF1G_HUMAN4.995e-2134.42Elongation factor 1-gamma OS=Homo sapiens GN=EEF1G... [more]
EF1GA_XENLA4.995e-2134.72Elongation factor 1-gamma-A OS=Xenopus laevis GN=e... [more]
EF1G_PIG6.524e-2125.62Elongation factor 1-gamma (Fragment) OS=Sus scrofa... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_003E11_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_003_T7_E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884458 ID=CV884458; Name=CV884458; organism=Citrus sinensis; type=EST; length=944bp
AGATGTCCAATCATCCTCAAAATTGCGACAAAATTATAAGTTAATACTAT
AACACAAAATACTAGACTTCGATCTTTCTGAATTCGAAACACAAACAAAC
TCTACCAATAACAAAGACAAACATGAACATCTTAAAACTAGAAAAAAGAT
TAAGCTCATCACTTGAAGCACTTAGCATCCAAAAGAGCTTCACCCTCAAA
AGGCTCGTGATCCTCGATCATCTGGTTCACACGTTCCTTTTGCTCTTCGT
CTGAGATGTCAGCCTTCTTCCAGTCATACAATTCCATGTCATAGCACTCA
TCCATGACGAATTTAGGAATTTCTGGGCCACGGAAGAGCCACAACCCCTT
GACTTTGTATGGAGGCTCGTTGCCGATAATTAACATCTTTCCAAACGCAT
ACTTGCGAGCCAGATCCATCCTCTGAAGAAACCCACTAACCTTGTTCAAG
GTCACGAATGACACAGTATTCTCGTCATTGTATTTGTAATCACAGAACCA
AAGTGAGTAACCCTCAGGATCATACATGTCCCAGAATCCTTTAATTGCAA
CTTCACGGAAGTTGGACTTCGTGTTTGAGTAAAGCCTCTTCCAGTCATCC
AGAATCATCTTACTTGGGGGCAGCAGATCAAGAGGGTTCTTTGGTTTGGG
CTTAGGTGCTTCCTCTTCTTCAGCAGCTTCAGCTTTGGGCTTTGGTGCTT
CTTTCTTTGGTTCCGCCTTGGCCTTTGGTTTAGCAGATTCCTTAGCTTGA
GCAGGCTTCTTTGCAGACTGAACAGCTGGGACAGATTCGGCTTGCTTAAA
ATCACCCAAAAACTTCTTAATTTTTGGTTGGTTGGCCACGGTCCAAAAGT
ATCTCTCAACATGGGGAAACTCAGAGGTGAAAGTCTTCGTCATGATGTGC
TTTAATCCATAATATAAATTGCATATCATGACAATGTCAGCCAG
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