CV884458

Overview
NameCV884458
Unique NameCV884458
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length944
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV884458_ssr824 microsatellite CV884458_ssr824:824..835. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig12382 contig Csv1_Contig12382:532..1476. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884458 vs. ExPASy Swiss-Prot
Match: EF1G_ARTSA (Elongation factor 1-gamma OS=Artemia salina PE=1 SV=3)

HSP 1 Score: 101.293 bits (251), Expect = 8.520e-21
Identity = 48/128 (37.50%), Postives = 74/128 (57.81%), Query Frame = -1
Query:  222 LDDWKRLYSNTKSNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVSGFLQRMDLARKYAFGKMLIIGNEPPYKVKGLWLFRGPEIP-KFVMDECYDMELYDWKKADISDEEQKERVNQ 602
            +DD+KR YSN   N    +I  FW+ +D E YS+W+ +YKY DE    +++ N ++G  QR++  RK AF  + + G +    + G+W++RG ++  K   D   D E YDWKK D   +E K+ V Q
Sbjct:  285 MDDFKRFYSN---NEETKSIPYFWEKFDKENYSIWYSEYKYQDELAKVYMSCNLITGMFQRIEKMRKQAFASVCVFGEDNDSSISGIWVWRGQDLAFKLSPDWQIDYESYDWKKLDPDAQETKDLVTQ 409          
BLAST of CV884458 vs. ExPASy Swiss-Prot
Match: EF1G_DROME (Elongation factor 1-gamma OS=Drosophila melanogaster GN=Ef1gamma PE=1 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 1.113e-20
Identity = 50/127 (39.37%), Postives = 75/127 (59.06%), Query Frame = -1
Query:  222 DDWKRLYSNTKSNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVSGFLQRMDLARKYAFGKMLIIGNEPPYKVKGLWLFRGPEIP-KFVMDECYDMELYDWKKADISDEEQKERVNQ 599
            DD+KR+YSN        +I  F+D +D E YS+WF +YKYN+E +  F++ N ++G  QR+D  RK AF  + + G +    + G+W++RG ++      D   D E+YDWKK D   EE K+ V Q
Sbjct:  287 DDFKRVYSNEDE---AKSIPYFFDKFDAENYSIWFGEYKYNEELSKVFMSCNLITGMFQRLDKMRKAAFASVCLFGEDGNSTISGIWVWRGQDLAFTLSPDWQIDYEVYDWKKLDAKSEETKKLVTQ 410          
BLAST of CV884458 vs. ExPASy Swiss-Prot
Match: EF1G_BOVIN (Elongation factor 1-gamma OS=Bos taurus GN=EEF1G PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.898e-20
Identity = 54/154 (35.06%), Postives = 84/154 (54.55%), Query Frame = -1
Query:  162 SKMILDDWKRLYSNTKSNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVSGFLQRMDLARKYAFGKMLIIGNEPPYKVKGLWLFRGPEIP-KFVMDECYDMELYDWKKADISDEEQKERVNQMIEDHEPFE--GEALLDAKCFK 614
            S  +LD++KR YSN  +    VA+  FWD +D +G+SLW+ +Y++ +E T +F++ N ++G  QR+D  RK AF  +++ G      + G+W FRG E+      D   D E Y W+K D   EE +  V +       F+  G+A    K FK
Sbjct:  289 STFVLDEFKRKYSNEDT--LSVALPYFWDHFDKDGWSLWYSEYRFPEELTQTFMSCNLITGMFQRLDKLRKNAFASVILFGTNNSSSISGVWDFRGQELAFPLSPDWQVDYESYTWRKLDPGSEETQTLVREYFCWEGAFQHVGKAFNQGKIFK 440          
BLAST of CV884458 vs. ExPASy Swiss-Prot
Match: EF1GB_XENLA (Elongation factor 1-gamma-B OS=Xenopus laevis GN=eef1g-B PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.479e-20
Identity = 52/155 (33.55%), Postives = 88/155 (56.77%), Query Frame = -1
Query:  162 SKMILDDWKRLYSNTKSNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVSGFLQRMDLARKYAFGKMLIIGNEPPYKVKGLWLFRGPEIPKFVMDECY--DMELYDWKKADISDEEQKERVNQMIEDHEPFE--GEALLDAKCFK 614
            S  I+D++KR YSN  +    VA+  FW+ ++ EG+S+W+ +YK+ +E T +F++ N ++G  QR+D  RK AF  +++ G      + G+W+FRG ++  F + E +  D E Y W+K +   EE +  V +       F+  G+A    K FK
Sbjct:  286 SSFIMDEFKRKYSNEDT--LTVALPYFWEHFEKEGWSIWYAEYKFPEELTQTFMSCNLITGMFQRLDKLRKTAFASVILFGTNNNSTISGVWVFRGHDL-AFTLSEDWQIDYESYTWRKLESDSEECRTMVKEYFAWEGEFKHVGKAFNQGKIFK 437          
BLAST of CV884458 vs. ExPASy Swiss-Prot
Match: EF1G_SCHPO (Elongation factor 1-gamma OS=Schizosaccharomyces pombe GN=tef3 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.836e-16
Identity = 50/149 (33.56%), Postives = 79/149 (53.02%), Query Frame = -1
Query:  162 LDDWKRLYSNTKSNFREVAIKGFWDMYDPEGYSLWFCDYKY-NDENTVSFVTLNKVSGFLQRMDLARKYAFGKMLIIGNEPPYKVKGLWLFRGPE-IPKFVMDECYDMELYDWKKADISDEEQKERVNQMIEDHEPFEGEALLDAKCFK 602
            ++++KR+YSN  +  R  A+  F++ +DPE YS+W  DY Y  D     F+T N + GF QR++ +RKY FG  ++IG      + G ++ +G + +P F  D   D   Y + K DI+  E K  +       +P EG  + D K  K
Sbjct:  265 IEEYKRVYSNQDT--RSGALPWFFEHFDPENYSVWKVDYSYPEDLKQPVFMTNNLIGGFFQRLEASRKYIFGCCVVIGENGDNTITGAFVIKGHDYVPAF--DVAPDWGSYTFTKLDINKPEDKAFIEDAWAWDKPIEGREVADGKVCK 409          
The following BLAST results are available for this feature:
BLAST of CV884458 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
EF1G_ARTSA8.520e-2137.50Elongation factor 1-gamma OS=Artemia salina PE=1 S... [more]
EF1G_DROME1.113e-2039.37Elongation factor 1-gamma OS=Drosophila melanogast... [more]
EF1G_BOVIN1.898e-2035.06Elongation factor 1-gamma OS=Bos taurus GN=EEF1G P... [more]
EF1GB_XENLA2.479e-2033.55Elongation factor 1-gamma-B OS=Xenopus laevis GN=e... [more]
EF1G_SCHPO2.836e-1633.56Elongation factor 1-gamma OS=Schizosaccharomyces p... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_003E11_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_003_T7_E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884458 ID=CV884458; Name=CV884458; organism=Citrus sinensis; type=EST; length=944bp
AGATGTCCAATCATCCTCAAAATTGCGACAAAATTATAAGTTAATACTAT
AACACAAAATACTAGACTTCGATCTTTCTGAATTCGAAACACAAACAAAC
TCTACCAATAACAAAGACAAACATGAACATCTTAAAACTAGAAAAAAGAT
TAAGCTCATCACTTGAAGCACTTAGCATCCAAAAGAGCTTCACCCTCAAA
AGGCTCGTGATCCTCGATCATCTGGTTCACACGTTCCTTTTGCTCTTCGT
CTGAGATGTCAGCCTTCTTCCAGTCATACAATTCCATGTCATAGCACTCA
TCCATGACGAATTTAGGAATTTCTGGGCCACGGAAGAGCCACAACCCCTT
GACTTTGTATGGAGGCTCGTTGCCGATAATTAACATCTTTCCAAACGCAT
ACTTGCGAGCCAGATCCATCCTCTGAAGAAACCCACTAACCTTGTTCAAG
GTCACGAATGACACAGTATTCTCGTCATTGTATTTGTAATCACAGAACCA
AAGTGAGTAACCCTCAGGATCATACATGTCCCAGAATCCTTTAATTGCAA
CTTCACGGAAGTTGGACTTCGTGTTTGAGTAAAGCCTCTTCCAGTCATCC
AGAATCATCTTACTTGGGGGCAGCAGATCAAGAGGGTTCTTTGGTTTGGG
CTTAGGTGCTTCCTCTTCTTCAGCAGCTTCAGCTTTGGGCTTTGGTGCTT
CTTTCTTTGGTTCCGCCTTGGCCTTTGGTTTAGCAGATTCCTTAGCTTGA
GCAGGCTTCTTTGCAGACTGAACAGCTGGGACAGATTCGGCTTGCTTAAA
ATCACCCAAAAACTTCTTAATTTTTGGTTGGTTGGCCACGGTCCAAAAGT
ATCTCTCAACATGGGGAAACTCAGAGGTGAAAGTCTTCGTCATGATGTGC
TTTAATCCATAATATAAATTGCATATCATGACAATGTCAGCCAG
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