CV884457

Overview
NameCV884457
Unique NameCV884457
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length807
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV884457_ssr645 microsatellite CV884457_ssr645:645..656. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig12382 contig Csv1_Contig12382:1..803. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884457 vs. ExPASy Swiss-Prot
Match: EF1G_TRYCR (Elongation factor 1-gamma OS=Trypanosoma cruzi PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.538e-17
Identity = 68/201 (33.83%), Postives = 107/201 (53.23%), Query Frame = 2
Query:   83 VGQENKNGFKGLIAAEYAGVEVKLAENFEMGVTNKSPEFLK-MNPLGKVPVLETPDGPVFESNAIARYVARL-KADNQLCGSSLIDYAHVEQWMDFSAMEIDANISRWLYPRLGYMQYIPLAEEGAVAALKRALDALNIHLASNTYLVGHSVTLADIVMICNL--YYGFKHIMTKTFTSEFPHVERYFWTVANQPKIKKFL 673
            V  EN    K L AA  A V V L +  E G  N++ E+ +  +P G+ PVL+T +G VFESNAI R++ARL ++   L G + ++ + V+ W+DFSA E+DA    +++      +  PL    A+  +   L AL   L + T+LVG  +T+AD+ +   L  +Y       +  T ++ +  R + TV  QPK  + L
Sbjct:    9 VNPENARTHKLLAAAALANVAVTL-KACEYGRENETAEYCRNCSPCGRYPVLQTEEGCVFESNAILRHIARLDRSGGFLYGRTPLEGSQVDMWLDFSATELDAASEPFVHHA---FRGEPL-PANAMDRVHEVLRALEAWLETRTFLVGERMTVADVAVAFALQWHYRLNGAEGEALTKKYRNAYRMYNTVMQQPKTVEVL 204          
BLAST of CV884457 vs. ExPASy Swiss-Prot
Match: EF1G_SCHPO (Elongation factor 1-gamma OS=Schizosaccharomyces pombe GN=tef3 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.009e-17
Identity = 60/180 (33.33%), Postives = 94/180 (52.22%), Query Frame = 2
Query:  125 AEYAGVEVKLAENFEMGVTNKSPEFLKMNPLGKVPVLETPDG-PVFESNAIARYVARLKADNQLCGSSLIDYAHVEQWMDFSAMEIDANISRWLYPRLGYMQYIPLAEEGAVAALKRALDALNIHLASNTYLVGHSVTLADIVMICNLYYGFKHIMTKTFTSEFPHVERYFWTVANQPKI 661
            A  AGVEV   E+ ++   N   +     PL K+PV    DG P+ E+ AIA Y+A L     L G++  + A V Q+  F+  E+       + PR+    Y   A + A  A+       +  LAS TYLVG  +TLADI   C L +G  +++TK++ +++ H+ RY+ T+ +Q K+
Sbjct:   22 AAVAGVEV---EHVDVQPHNFPADLAAKFPLQKMPVFVGKDGFPLSETLAIAFYLASLNKTRALNGTTAEEKAKVLQYCSFTNSELPGAFRPIIAPRVFGAPYDEQAAKEAETAIALIFARFDEELASKTYLVGSRLTLADIFFTCFLKFGATYVLTKSYLAKYTHIYRYYQTIYHQAKL 198          
BLAST of CV884457 vs. ExPASy Swiss-Prot
Match: GSTF4_MAIZE (Glutathione S-transferase 4 OS=Zea mays GN=GST4 PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 9.334e-15
Identity = 62/195 (31.79%), Postives = 96/195 (49.23%), Query Frame = 2
Query:  110 KGLIAAEYAGVEVKLAENFEMGVTNKSPEFLKMNPLGKVPVLETPDGPVFESNAIARYVARLKADNQLCGSSLIDYAHVEQWMDFSAMEID----ANISRWLY-PRLGYMQYIPLAEEGAVAALKRALDALNIHLASNTYLVGHSVTLADI----VMICNLYYGFKHIMTKTFTSEFPHVERYFWTVANQPKIKK 667
            + L+A E AGV+ +L         ++ PE L  NP GKVPVLE  D  +FES AIAR+V R      L G  L   A V+ W++  A ++     A +   ++ P LG  +   + +E  V  LK+ L+     LA+ TYL G  ++LAD+    +M C +   +  ++        PHV  ++  +A +P   K
Sbjct:   19 RALLALEEAGVDYELVPMSRQDGDHRRPEHLARNPFGKVPVLEDGDLTLFESRAIARHVLRKHKPELLGGGRLEQTAMVDVWLEVEAHQLSPPAIAIVVECVFAPFLGRERNQAVVDEN-VEKLKKVLEVYEARLATCTYLAGDFLSLADLSPFTIMHCLMATEYAALV-----HALPHVSAWWQGLAARPAANK 207          
BLAST of CV884457 vs. ExPASy Swiss-Prot
Match: GSTF1_ORYSJ (Probable glutathione S-transferase GSTF1 OS=Oryza sativa subsp. japonica GN=GSTF1 PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.542e-12
Identity = 54/200 (27.00%), Postives = 97/200 (48.50%), Query Frame = 2
Query:   92 ENKNGFKGLIAAEYAGVEVKLAENFEMGVTNKSPEFLKMNPLGKVPVLETPDGPVFESNAIARYVAR---LKADNQLCGSSLIDYAHVEQWMDFSAMEIDANISRWLYPRL--GYMQYIPLAE---EGAVAALKRALDALNIHLASNTYLVGHSVTLADIVMICNLYYGFKHIMTKTFTSEFPHVERYFWTVANQPKIKK 667
            ++ N  + L+  E  G E ++       + +KSPE LK NP G++P  +  D  +FES AI +Y+ R    +  + L   +L + A V+ W +    + ++ IS  +Y  +    M+ IP  +   + +   LK+ L+     L+ +TYL G  V+ AD+      +Y         F S +PHV+ ++  +  +P +KK
Sbjct:   11 QSTNVARVLLCLEEVGAEYEVVNVDFTVMEHKSPEHLKRNPFGQIPAFQDGDLYLFESRAIGKYILRKYKTREADLLREGNLREAAMVDVWTEVETHQYNSAISPIVYECIINPAMRGIPTNQKVVDESAEKLKKVLEVYEARLSQSTYLAGDFVSFADLNHFPYTFYFMGTPYASLFDS-YPHVKAWWERLMARPSVKK 209          
BLAST of CV884457 vs. ExPASy Swiss-Prot
Match: STCT_EMENI (Putative sterigmatocystin biosynthesis protein stcT OS=Emericella nidulans GN=stcT PE=4 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.261e-11
Identity = 50/166 (30.12%), Postives = 83/166 (50.00%), Query Frame = 2
Query:  194 EFLKMNPLGKVPVLETPDGPVF-ESNAIARYVARLKADNQLCGSSLIDYAHVEQWMDFSAMEIDANISRWLYPRLGYMQY----IPLAEEGAVAALKRALDALNIHLASNTYLVGHSVTLADIVMICNLYYGFKHIMTKTFTSEFPHVERYFWTVANQPKIKKFLG 676
            E+L++NPLGK+P     DG V  ES AIA Y     ++  L G++  +YA + +WM F   EI   +  W  P +G   +    I  +++  +A LK     L+ HL    YLVG +++LAD+ ++  +   F+  + K +  E  ++  +F  V   P +    G
Sbjct:   43 EYLQLNPLGKIPTFVGADGYVLTESIAIALY----DSNTTLLGTTGQEYASIIRWMAFGITEILPALGGWFNPLIGRANFNADNIYQSKDDTLARLK----ILDNHLCGREYLVGETLSLADLFVLGIVQGAFRFFLDKRWRDEHRNLSTWFERVHALPIVVDVAG 200          
BLAST of CV884457 vs. ExPASy Swiss-Prot
Match: GSTF1_MAIZE (Glutathione S-transferase 1 OS=Zea mays GN=GST1 PE=1 SV=4)

HSP 1 Score: 70.0922 bits (170), Expect = 1.648e-11
Identity = 53/191 (27.75%), Postives = 90/191 (47.12%), Query Frame = 2
Query:  122 AAEYAGVEVKLAENFEMGVTNKSPEFLKMNPLGKVPVLETPDGPVFESNAIARYVARLKADNQLCGSSLIDYAHVEQWMDFSAMEIDANISRWLY-----PRLGYMQYIPLAEEGAVAALKRALDALNIHLASNTYLVGHSVTLADI----VMICNLYYGFKHIMTKTFTSEFPHVERYFWTVANQPKIKK 667
            A E AG + ++         +KSPE L  NP G+VP L+  D  +FES AI +Y AR      L   +L + A V+ W++  A +  A ++  L+     P LG      + +E  +  LK+ L+     L    YL G  ++LAD+    V +C     +  ++       +PHV+ ++  +  +P ++K
Sbjct:   21 ALEEAGSDYEIVPINFATAEHKSPEHLVRNPFGQVPALQDGDLYLFESRAICKYAARKNKPELLREGNLEEAAMVDVWIEVEANQYTAALNPILFQVLISPMLGGTTDQKVVDEN-LEKLKKVLEVYEARLTKCKYLAGDFLSLADLNHVSVTLCLFATPYASVL-----DAYPHVKAWWSGLMERPSVQK 205          
The following BLAST results are available for this feature:
BLAST of CV884457 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
EF1G_TRYCR1.538e-1733.83Elongation factor 1-gamma OS=Trypanosoma cruzi PE=... [more]
EF1G_SCHPO2.009e-1733.33Elongation factor 1-gamma OS=Schizosaccharomyces p... [more]
GSTF4_MAIZE9.334e-1531.79Glutathione S-transferase 4 OS=Zea mays GN=GST4 PE... [more]
GSTF1_ORYSJ2.542e-1227.00Probable glutathione S-transferase GSTF1 OS=Oryza ... [more]
STCT_EMENI1.261e-1130.12Putative sterigmatocystin biosynthesis protein stc... [more]
GSTF1_MAIZE1.648e-1127.75Glutathione S-transferase 1 OS=Zea mays GN=GST1 PE... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_003E11_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_003_T3_E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884457 ID=CV884457; Name=CV884457; organism=Citrus sinensis; type=EST; length=807bp
GTGGCCTTTCAGGAGAACGCTCGCATTCATCTGTAATTTGAGCGAATCGT
TTCTCCGTTAAGCCATGGCTCTGGTCTTGCATGTTGGGCAGGAAAACAAA
AATGGATTCAAAGGACTCATTGCTGCTGAGTACGCTGGTGTGGAAGTCAA
ATTGGCTGAGAATTTTGAGATGGGTGTCACTAATAAATCCCCTGAATTTT
TGAAGATGAACCCTCTTGGGAAGGTTCCTGTGTTGGAGACACCTGATGGT
CCGGTTTTTGAGAGCAATGCCATTGCCCGTTATGTTGCACGTCTGAAAGC
TGACAATCAACTATGTGGTTCTTCTCTGATCGATTATGCTCATGTTGAGC
AGTGGATGGATTTTTCTGCCATGGAGATTGATGCTAATATCTCCAGGTGG
TTATATCCAAGACTTGGATATATGCAATACATTCCTCTGGCTGAGGAAGG
TGCTGTTGCCGCACTGAAGAGAGCATTGGATGCTTTGAACATTCATTTGG
CTTCAAATACGTACTTGGTTGGCCATTCTGTCACCCTGGCTGACATTGTC
ATGATATGCAATTTATATTATGGATTTAAGCACATCATGACGAAGACTTT
CACCTCTGAGTTTCCCCATGTTGAGAGATACTTTTGGACCGTGGCCAACC
AACCAAAAATTAAGAAGTTTTTGGGTGATTTTAAGCAAGCCGAATCTGTC
CCAGCTGTTCAGTCTGCAAAGAAGCCTGCTCAAGCTAAGGAATCTGCTAA
ACCAAAGGCCAAGGCGGAACCAAAGAAAGAAGCACCAAAGCCCAAAGCTG
AAGCTGC
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