CV884448

Overview
NameCV884448
Unique NameCV884448
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length848
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884448 vs. ExPASy Swiss-Prot
Match: RS4E_METS5 (30S ribosomal protein S4e OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rps4e PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.832e-14
Identity = 55/195 (28.21%), Postives = 90/195 (46.15%), Query Frame = -2
Query:  281 LKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDP-----LIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREK---HKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSL 841
            L +  + +E   I+    VLVDG+VR D  YP G MDV++IP  +   R++ D     +   + +EE+KFKL ++ +    + G+   N  DGR +           +    T+K+ +   +I     F     VM  GG+N G +G +K  +        +  + I+   G E+ T L N   IG+  KP V +
Sbjct:   47 LAFTSSLKESKKIISDGKVLVDGRVRRDYKYPVGLMDVIAIPHADLYLRIVPDRARLLKPVKISEEESKFKLVRLLNKTLVKGGLLQFNLEDGRNLLISKESTEMFKLPTLTTLKISIPNQEILGVYGFKENVYVMAVGGKNAGIIGQLKRIQTSPYKTRRYSIVVIRSPDGSEYETNLENAMVIGE-EKPEVKV 240          
BLAST of CV884448 vs. ExPASy Swiss-Prot
Match: RS4E_PYRCJ (30S ribosomal protein S4e OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rps4e PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.537e-14
Identity = 50/145 (34.48%), Postives = 72/145 (49.66%), Query Frame = -2
Query:  416 LKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPL---IKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVG 841
            L+YA T RE   I+ + ++ VDG VR D  +P G MDVV I  T E +R++ D    + L  +   EA  K  +V        G   ++ +DGR +  P  +   IK  DT+  DLE   I   +   +G + +VT G N G VG
Sbjct:   48 LRYAKTLREARYIISRGYIKVDGVVRKDYKFPIGLMDVVEIVPTGEIYRVVPDEAKYYDLKPIPSSEAALKPLRVEGKTAVSGGRIQLHFHDGRNLILPPDVGRQIKTFDTVVYDLENKAIKTHLPLRLGQLAVVTHGGNIGFVG 192          
BLAST of CV884448 vs. ExPASy Swiss-Prot
Match: RS4E_PYRAR (30S ribosomal protein S4e OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rps4e PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.537e-14
Identity = 53/145 (36.55%), Postives = 72/145 (49.66%), Query Frame = -2
Query:  416 LKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRT-IRYPD--PLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVG 841
            L+YA T RE   I+ + ++ VDG VR D  +P G MDV+ I  T E +R++ D    + L  +   EA  KL +V        G   ++ +DGR  I  PD    IK  DTI  DLE   I   I   +G + +VT G N G  G
Sbjct:   48 LRYAKTLREARYIVSRGYIKVDGVVRKDYRFPVGLMDVIEIVPTGEVYRVVPDQDRYYNLLPIPSSEASLKLLRVEGKTTVNGGRLQLHFHDGRNLITSPDMGAKIKTFDTILYDLENKTIKTHIPMKLGVVAVVTHGSNVGFSG 192          
BLAST of CV884448 vs. ExPASy Swiss-Prot
Match: RS4E_PICTO (30S ribosomal protein S4e OS=Picrophilus torridus GN=rps4e PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.537e-14
Identity = 54/179 (30.17%), Postives = 90/179 (50.28%), Query Frame = -2
Query:  308 LKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFET-IHIQDALGHEFATRLGNVFTIG 841
            LK     RE+  IL    V+VDGKV  ++    GFMD +++  +  ++ + YD KG+  +     E    KL +V+   + + G   I+ +DG T+      IK  D++ + + + +I D +KF  GN V +TGG + G +  IK+ E    S E  +H+ +     F+T    VF +G
Sbjct:   48 LKLGDKEREITRILTNSLVMVDGKVVKERRRGIGFMDTLTV--SGNDYLVSYDRKGKLVILPKPGETKGLKLLRVKGKTYVKGGRIQISFHDGSTMVTDRKDIKNGDSVLVKIPKKEIVDVLKFAPGNRVFITGGSHVGEIATIKSIEIKSSSGENMVHMNEG----FSTVSSYVFVMG 220          
BLAST of CV884448 vs. ExPASy Swiss-Prot
Match: RS4E_METHJ (30S ribosomal protein S4e OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps4e PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.115e-13
Identity = 54/179 (30.17%), Postives = 88/179 (49.16%), Query Frame = -2
Query:  299 REVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEE---NKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSF--ETIHIQDALGHEFATRLGNVFTIGKGS 820
            +E   +L +R ++V+G+         G  D+VSIPK+ +++R+L D KGR     + ++ A  +L K+ +    + G   +N  DG  +   D   K+ D+I L L+E   N+I D   F  GN+ M+ GG++ G VG I       GS     I   ++ G  F T    V  +G+ S
Sbjct:   54 KEAKHVLREREIIVNGRPVRHPDMGIGIFDIVSIPKSGKHYRILRDKKGRHVTIPIDEDAASSRLVKITNKTIVKGGRIQLNLRDGSNV-LTDKQYKSGDSIVLSLKEGQKNEIIDHFPFQPGNMAMIIGGKHSGVVGRIIEHIPVPGSLPNRVILKDESSGESFETIDEYVVMVGRES 231          
BLAST of CV884448 vs. ExPASy Swiss-Prot
Match: RS4E_THENV (30S ribosomal protein S4e OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rps4e PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.533e-13
Identity = 47/142 (33.10%), Postives = 72/142 (50.70%), Query Frame = -2
Query:  425 LKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPL---IKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRG 841
            L+YA T RE   I+ + ++ VDG VR +  +P G MDVV I  T E +R++ D +  + L  +  EEA  KL +V      + G   ++ +DGR +  P      IK  D++  DL+   +   I   +G   +VT G N G
Sbjct:   48 LRYAKTLREARMIISRGYIKVDGVVRRNYKFPVGLMDVVEIVPTGEIYRVVPDERSYYALVPITSEEADLKLLRVEGKTAVKGGRLQVHFHDGRNLIMPAETARQIKTFDSVLYDLKARTVRSHIPMRLGVYAVVTHGGNVG 189          
BLAST of CV884448 vs. ExPASy Swiss-Prot
Match: RS4E_NANEQ (30S ribosomal protein S4e OS=Nanoarchaeum equitans GN=rps4e PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.233e-12
Identity = 56/178 (31.46%), Postives = 83/178 (46.63%), Query Frame = -2
Query:  311 LKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCK-VRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTI 841
            L  A   REV  +L    VLVDG+   D  +P G  DV++IP+ NE +R+L D +G+  L  +  EEA  K  K +R V      I Y  T DGRT    D   K +  +  ++   KI + I  +      +  G++ GR+G+IK   K    +  I   +  G    T L N+  +
Sbjct:   53 LGLAENMREVRYLLNNGKVLVDGRPIKDYKFPVGLFDVLAIPEINEYYRVLLDERGKLYLKKIDKEEANIKYGKIIRKVSVRGGKIQYTLT-DGRTF-LGDNSYKTHYGVVYEIPNFKIREVIPLEKDRKAYIIRGKHTGRIGVIKEVIKTDMPWPNIVRLEVAGEVGETWLDNIIPV 228          
BLAST of CV884448 vs. ExPASy Swiss-Prot
Match: RS4E_PYRAE (30S ribosomal protein S4e OS=Pyrobaculum aerophilum GN=rps4e PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.363e-11
Identity = 49/147 (33.33%), Postives = 69/147 (46.94%), Query Frame = -2
Query:  410 LKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR---TIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGII 841
            LKYA T  E   I+ + +V VDG VR D  +P G MDV+ I  T E +R++ D    + L  +  EEA  KL +V      + G   ++ +DGR   T       IK  D++  DL    I   I   +G   +V  G N G  G +
Sbjct:   48 LKYAKTMHEARYIISRGYVKVDGVVRRDYKFPVGLMDVIEIVPTGEVYRVVPDADKYYNLLPISTEEAALKLLRVEGKTMVKGGRIQLHFHDGRNLITTLEAGKQIKTFDSVLYDLRNKAIKAHIPLKLGVNAVVIHGSNVGFSGTL 194          
The following BLAST results are available for this feature:
BLAST of CV884448 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
RS4E_METS53.832e-1428.2130S ribosomal protein S4e OS=Metallosphaera sedula... [more]
RS4E_PYRCJ8.537e-1434.4830S ribosomal protein S4e OS=Pyrobaculum calidifon... [more]
RS4E_PYRAR8.537e-1436.5530S ribosomal protein S4e OS=Pyrobaculum arsenatic... [more]
RS4E_PICTO8.537e-1430.1730S ribosomal protein S4e OS=Picrophilus torridus ... [more]
RS4E_METHJ1.115e-1330.1730S ribosomal protein S4e OS=Methanospirillum hung... [more]
RS4E_THENV5.533e-1333.1030S ribosomal protein S4e OS=Thermoproteus neutrop... [more]
RS4E_NANEQ1.233e-1231.4630S ribosomal protein S4e OS=Nanoarchaeum equitans... [more]
RS4E_PYRAE1.363e-1133.3330S ribosomal protein S4e OS=Pyrobaculum aerophilu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_003E05_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_003_T7_E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884448 ID=CV884448; Name=CV884448; organism=Citrus sinensis; type=EST; length=848bp
AACTTAGATTAATAGTTGAAAATAACATCCACCAAATAGTAGCTAAAATA
AAAAAGGACAAAGCAGGTTCAAAATTGTGCTGATAAAATAAAAATAAAGA
TTCATTTTTGCATCCGTCCTACTTCAGCTTTAGAGAGTGCCAATCAGCTC
TAATTCAACAAGAAAAAACAAAGCAGCAAAATGTATCCAAATTCATTGTA
AAAGCTTAAGCAGCAGCCTGGGCAGCCTGTCTCTTCCTAGCTTCCTCAAT
GATGGACAACTTAATACCCTTGCCCTTAGGAAGTGACACCCATGGTTTTG
AACCCTTCCCGATGGTGAACACATTGCCTAGACGAGTTGCAAACTCATGA
CCAAGGGCATCTTGAATATGGATGGTCTCAAAACTTCCCTTATGCTTTTC
CCTGTTCTTGATGATTCCAACCCGACCTCTGTTTCTACCCCCAGTGACCA
TGACAATATTCCCAACATCAAACTTGATGAAGTCAGTGATCTTGTTCTCT
TCTAAGTCAAGTTTGATGGTATCATTGGCTTTGATGAGTGGGTCAGGGTA
GCGGATGGTACGCCCATCATAGGTGTTGATGTATGGGATACCTTTCTGGC
CAAACTGGACTGATCTAACTTTGCAAAGCTTGAATTTTGCCTCCTCATCT
CTGAGGGAATGGAGACGGAAGCGACCCTTGGTGTCATAAAGGAGACGGAA
GTTCTCGTTGGTCTTGGGAATTGACACAACATCCATGAAACCAGCAGGGT
AGGTCTTATCTGTCCTAACCTTCCCATCAACAAGAACATGTCGTTGCATC
AGAATAGCAATAACTTCACGATATGTGAGAGCATATTTCAAACGGTTT
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