CV884448
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CV884448 vs. ExPASy Swiss-Prot
Match: RS4E_METS5 (30S ribosomal protein S4e OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rps4e PE=3 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 3.832e-14 Identity = 55/195 (28.21%), Postives = 90/195 (46.15%), Query Frame = -2 Query: 281 LKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDP-----LIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREK---HKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSL 841 L + + +E I+ VLVDG+VR D YP G MDV++IP + R++ D + + +EE+KFKL ++ + + G+ N DGR + + T+K+ + +I F VM GG+N G +G +K + + + I+ G E+ T L N IG+ KP V + Sbjct: 47 LAFTSSLKESKKIISDGKVLVDGRVRRDYKYPVGLMDVIAIPHADLYLRIVPDRARLLKPVKISEEESKFKLVRLLNKTLVKGGLLQFNLEDGRNLLISKESTEMFKLPTLTTLKISIPNQEILGVYGFKENVYVMAVGGKNAGIIGQLKRIQTSPYKTRRYSIVVIRSPDGSEYETNLENAMVIGE-EKPEVKV 240
BLAST of CV884448 vs. ExPASy Swiss-Prot
Match: RS4E_PYRCJ (30S ribosomal protein S4e OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rps4e PE=3 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 8.537e-14 Identity = 50/145 (34.48%), Postives = 72/145 (49.66%), Query Frame = -2 Query: 416 LKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPL---IKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVG 841 L+YA T RE I+ + ++ VDG VR D +P G MDVV I T E +R++ D + L + EA K +V G ++ +DGR + P + IK DT+ DLE I + +G + +VT G N G VG Sbjct: 48 LRYAKTLREARYIISRGYIKVDGVVRKDYKFPIGLMDVVEIVPTGEIYRVVPDEAKYYDLKPIPSSEAALKPLRVEGKTAVSGGRIQLHFHDGRNLILPPDVGRQIKTFDTVVYDLENKAIKTHLPLRLGQLAVVTHGGNIGFVG 192
BLAST of CV884448 vs. ExPASy Swiss-Prot
Match: RS4E_PYRAR (30S ribosomal protein S4e OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rps4e PE=3 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 8.537e-14 Identity = 53/145 (36.55%), Postives = 72/145 (49.66%), Query Frame = -2 Query: 416 LKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRT-IRYPD--PLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVG 841 L+YA T RE I+ + ++ VDG VR D +P G MDV+ I T E +R++ D + L + EA KL +V G ++ +DGR I PD IK DTI DLE I I +G + +VT G N G G Sbjct: 48 LRYAKTLREARYIVSRGYIKVDGVVRKDYRFPVGLMDVIEIVPTGEVYRVVPDQDRYYNLLPIPSSEASLKLLRVEGKTTVNGGRLQLHFHDGRNLITSPDMGAKIKTFDTILYDLENKTIKTHIPMKLGVVAVVTHGSNVGFSG 192
BLAST of CV884448 vs. ExPASy Swiss-Prot
Match: RS4E_PICTO (30S ribosomal protein S4e OS=Picrophilus torridus GN=rps4e PE=3 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 8.537e-14 Identity = 54/179 (30.17%), Postives = 90/179 (50.28%), Query Frame = -2 Query: 308 LKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFET-IHIQDALGHEFATRLGNVFTIG 841 LK RE+ IL V+VDGKV ++ GFMD +++ + ++ + YD KG+ + E KL +V+ + + G I+ +DG T+ IK D++ + + + +I D +KF GN V +TGG + G + IK+ E S E +H+ + F+T VF +G Sbjct: 48 LKLGDKEREITRILTNSLVMVDGKVVKERRRGIGFMDTLTV--SGNDYLVSYDRKGKLVILPKPGETKGLKLLRVKGKTYVKGGRIQISFHDGSTMVTDRKDIKNGDSVLVKIPKKEIVDVLKFAPGNRVFITGGSHVGEIATIKSIEIKSSSGENMVHMNEG----FSTVSSYVFVMG 220
BLAST of CV884448 vs. ExPASy Swiss-Prot
Match: RS4E_METHJ (30S ribosomal protein S4e OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps4e PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 1.115e-13 Identity = 54/179 (30.17%), Postives = 88/179 (49.16%), Query Frame = -2 Query: 299 REVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEE---NKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSF--ETIHIQDALGHEFATRLGNVFTIGKGS 820 +E +L +R ++V+G+ G D+VSIPK+ +++R+L D KGR + ++ A +L K+ + + G +N DG + D K+ D+I L L+E N+I D F GN+ M+ GG++ G VG I GS I ++ G F T V +G+ S Sbjct: 54 KEAKHVLREREIIVNGRPVRHPDMGIGIFDIVSIPKSGKHYRILRDKKGRHVTIPIDEDAASSRLVKITNKTIVKGGRIQLNLRDGSNV-LTDKQYKSGDSIVLSLKEGQKNEIIDHFPFQPGNMAMIIGGKHSGVVGRIIEHIPVPGSLPNRVILKDESSGESFETIDEYVVMVGRES 231
BLAST of CV884448 vs. ExPASy Swiss-Prot
Match: RS4E_THENV (30S ribosomal protein S4e OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rps4e PE=3 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 5.533e-13 Identity = 47/142 (33.10%), Postives = 72/142 (50.70%), Query Frame = -2 Query: 425 LKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPL---IKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRG 841 L+YA T RE I+ + ++ VDG VR + +P G MDVV I T E +R++ D + + L + EEA KL +V + G ++ +DGR + P IK D++ DL+ + I +G +VT G N G Sbjct: 48 LRYAKTLREARMIISRGYIKVDGVVRRNYKFPVGLMDVVEIVPTGEIYRVVPDERSYYALVPITSEEADLKLLRVEGKTAVKGGRLQVHFHDGRNLIMPAETARQIKTFDSVLYDLKARTVRSHIPMRLGVYAVVTHGGNVG 189
BLAST of CV884448 vs. ExPASy Swiss-Prot
Match: RS4E_NANEQ (30S ribosomal protein S4e OS=Nanoarchaeum equitans GN=rps4e PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 1.233e-12 Identity = 56/178 (31.46%), Postives = 83/178 (46.63%), Query Frame = -2 Query: 311 LKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCK-VRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTI 841 L A REV +L VLVDG+ D +P G DV++IP+ NE +R+L D +G+ L + EEA K K +R V I Y T DGRT D K + + ++ KI + I + + G++ GR+G+IK K + I + G T L N+ + Sbjct: 53 LGLAENMREVRYLLNNGKVLVDGRPIKDYKFPVGLFDVLAIPEINEYYRVLLDERGKLYLKKIDKEEANIKYGKIIRKVSVRGGKIQYTLT-DGRTF-LGDNSYKTHYGVVYEIPNFKIREVIPLEKDRKAYIIRGKHTGRIGVIKEVIKTDMPWPNIVRLEVAGEVGETWLDNIIPV 228
BLAST of CV884448 vs. ExPASy Swiss-Prot
Match: RS4E_PYRAE (30S ribosomal protein S4e OS=Pyrobaculum aerophilum GN=rps4e PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.363e-11 Identity = 49/147 (33.33%), Postives = 69/147 (46.94%), Query Frame = -2 Query: 410 LKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR---TIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGII 841 LKYA T E I+ + +V VDG VR D +P G MDV+ I T E +R++ D + L + EEA KL +V + G ++ +DGR T IK D++ DL I I +G +V G N G G + Sbjct: 48 LKYAKTMHEARYIISRGYVKVDGVVRRDYKFPVGLMDVIEIVPTGEVYRVVPDADKYYNLLPISTEEAALKLLRVEGKTMVKGGRIQLHFHDGRNLITTLEAGKQIKTFDSVLYDLRNKAIKAHIPLKLGVNAVVIHGSNVGFSGTL 194 The following BLAST results are available for this feature:
BLAST of CV884448 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 98
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Sequences
The
following sequences are available for this feature:
EST sequence >CV884448 ID=CV884448; Name=CV884448; organism=Citrus sinensis; type=EST; length=848bpback to top |