CV884447
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CV884447 vs. ExPASy Swiss-Prot
Match: RS4E_METVS (30S ribosomal protein S4e OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps4e PE=3 SV=1) HSP 1 Score: 139.813 bits (351), Expect = 1.616e-32 Identity = 78/244 (31.97%), Postives = 132/244 (54.10%), Query Frame = 2 Query: 44 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR--------TIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSL 751 +G +KHLKRL AP +W L + F +PS GPH + LPL+L++R+ LK A RE I+ +L+DG R + +P G MDV+SIP+ NEN+ +L+D GR L + E+ KLCK+ + + G +N +DGR ++ + + K D++ + L E + ++F+ G + +TGG++ G + EK + + +++ G +F T VF +G+ +P +S+ Sbjct: 4 KGPRKHLKRLAAPANWQLPRKERTFTVRPSPGPHSMDKSLPLLLIVRDTLKCADNAREAKKIIQMGKILIDGVKRKEYKHPVGLMDVLSIPELNENYLVLFDENGRISLK--KTEKTGVKLCKIVNKTVIKGGHIQLNLHDGRNQIVKVANALKAEEDIYKTGDSVLVSLPEQAVVGHVEFNEGKLAYITGGKHVGEFAKVVEVEKRTLYSDIVTLENKDGEKFKTIKPYVFIVGQ-DEPVISM 244
BLAST of CV884447 vs. ExPASy Swiss-Prot
Match: RS4E_METVA (30S ribosomal protein S4e OS=Methanococcus vannielii GN=rps4e PE=3 SV=1) HSP 1 Score: 139.813 bits (351), Expect = 1.616e-32 Identity = 78/244 (31.97%), Postives = 132/244 (54.10%), Query Frame = 2 Query: 44 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR--------TIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSL 751 +G +KHLKRL AP +W L + F +PS GPH + LPL+L++R+ LK A RE I+ +L+DG R + +P G MDV+SIP+ NEN+ +L+D GR L + E+ KLCK+ + + G +N +DGR ++ + + K D++ + L E + ++F+ G + +TGG++ G + EK + + +++ G +F T VF +G+ +P +S+ Sbjct: 4 KGPRKHLKRLAAPANWQLPRKERTFTVRPSPGPHSMDKSLPLLLIVRDTLKCADNAREAKKIIQMGKILIDGVKRKEYKHPVGLMDVLSIPELNENYLVLFDENGRISLK--KTEKTGVKLCKIVNKTVIKGGHIQLNLHDGRNQIVKVANALKAEEDIYKTGDSVLVSLPEQAVVGHVEFNEGKLAYITGGKHVGEFAKVVEVEKRTLYSDIVTLENKDGEKFKTIKPYVFIVGQ-DEPVISM 244
BLAST of CV884447 vs. ExPASy Swiss-Prot
Match: RS4E_METM5 (30S ribosomal protein S4e OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rps4e PE=3 SV=1) HSP 1 Score: 139.428 bits (350), Expect = 2.110e-32 Identity = 82/244 (33.61%), Postives = 132/244 (54.10%), Query Frame = 2 Query: 44 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR--------TIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSL 751 +G +KHLKRL AP +W L + AF +PS GPH + LPL+LV+R+ LKYA RE I+ +L+DG R + +PAG MDV+SIP+ +EN+ +L+D GR L + ++A KLCK+ + + G +N +DGR + + + K D++ + + E I + F G + VTGG++ G I E + + +++ G +F T VF +G+ +P +S+ Sbjct: 4 KGPRKHLKRLAAPANWQLPRKVKAFTVRPSPGPHSMDKSLPLLLVVRDVLKYADNAREAKKIIQTGKILIDGLKRKEYKHPAGLMDVLSIPEMDENYLVLFDESGRISLK--KTDKADAKLCKIVNKTVIKGGHIQLNLHDGRNQIVKVSDATKAEEDVYKTGDSVLVSIPEQSIVGHVAFGEGKLAYVTGGKHVGEFAKIVEVENRALYSDIVTLENKDGEKFKTVKPYVFIVGQ-DEPVISM 244
BLAST of CV884447 vs. ExPASy Swiss-Prot
Match: RS4E_PYRFU (30S ribosomal protein S4e OS=Pyrococcus furiosus GN=rps4e PE=3 SV=1) HSP 1 Score: 138.272 bits (347), Expect = 4.701e-32 Identity = 85/242 (35.12%), Postives = 134/242 (55.37%), Query Frame = 2 Query: 44 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR----TIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVG-IIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLP 754 +G K+HLKRL AP W +++ +A +P GPH R +PL+ ++R+ L YA T RE IL + LVDG+VR D +P G MDVVSIP+T E++R+L + G+ LH + ++EA K ++R+ + + +N +DG +I D + T+ + + E +I + + F+ G V VT G+N R G I++ + G + + I+D G F T F +G KP +SLP Sbjct: 4 KGPKRHLKRLAAPTSWYIERKAYKWAVRPRPGPHNMRTSIPLLYIVRDYLGYAKTAREARKILNEGKFLVDGRVRKDYKFPVGIMDVVSIPETGEHYRVLPNRIGKLILHPISEDEAFIKPLRIRNKRMIKGARVQLNFHDGTNHIVSIAEKDNYF-TSYTVLMKVPEREILEVLPFEKGAYVFVTQGKNVARKGRIVEIKRFPMGWPDVVTIEDEEGELFDTLKEYAFVVGT-DKPKISLP 243
BLAST of CV884447 vs. ExPASy Swiss-Prot
Match: RS4E_METM7 (30S ribosomal protein S4e OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rps4e PE=3 SV=1) HSP 1 Score: 137.887 bits (346), Expect = 6.139e-32 Identity = 81/244 (33.20%), Postives = 131/244 (53.69%), Query Frame = 2 Query: 44 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR--------TIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSL 751 +G +KHLKRL AP +W L + AF +PS GPH + LPL+LV+R+ LKYA RE I+ +L+DG R + +PAG MDV+SIP+ +EN+ +L+D GR L + ++ KLCK+ + + G +N +DGR + + + K D++ + + E I + F G + VTGG++ G I E + + +++ G +F T VF +G+ +P +S+ Sbjct: 4 KGPRKHLKRLAAPANWQLPRKVKAFTVRPSPGPHSMDKSLPLLLVVRDVLKYADNAREAKKIIQTGKILIDGLKRKEYKHPAGLMDVLSIPEMDENYLVLFDESGRISLK--KTDKTDAKLCKIVNKTVIKGGHIQLNLHDGRNQIVKVSDATKAEEDVYKTGDSVLVSIPEQSIVGHVAFGEGKLAYVTGGKHVGEFAKIVEVENRALYSDIVTLENKDGEKFKTVKPYVFIVGQ-DEPVISM 244
BLAST of CV884447 vs. ExPASy Swiss-Prot
Match: RS4E_METM6 (30S ribosomal protein S4e OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rps4e PE=3 SV=1) HSP 1 Score: 137.502 bits (345), Expect = 8.018e-32 Identity = 80/244 (32.79%), Postives = 131/244 (53.69%), Query Frame = 2 Query: 44 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR--------TIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSL 751 +G +KHLKRL AP +W L + AF +PS GPH + LPL+LV+R+ LKYA RE I+ +L+DG R + +PAG MDV+SIP+ +EN+ +L+D GR L + ++ KLCK+ + + G +N +DGR + + + K D++ + + E I + F G + +TGG++ G I E + + +++ G +F T VF +G+ +P +S+ Sbjct: 4 KGPRKHLKRLAAPANWQLPRKVKAFTVRPSPGPHSMDKSLPLLLVVRDILKYADNAREAKKIIQTGKILIDGLKRKEYKHPAGLMDVLSIPEMDENYLVLFDESGRISLK--KTDKTDAKLCKIVNKTVIKGGHIQLNLHDGRNQIVKVSDATKAEEDVYKTGDSVLVSIPEQSIVGHVAFGEGKLAYITGGKHVGEFAKIVEVENRALYSDIVTLENKDGEKFKTVKPYVFIVGQ-DEPVISM 244
BLAST of CV884447 vs. ExPASy Swiss-Prot
Match: RS4E_METS3 (30S ribosomal protein S4e OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rps4e PE=3 SV=1) HSP 1 Score: 137.117 bits (344), Expect = 1.047e-31 Identity = 82/236 (34.75%), Postives = 128/236 (54.24%), Query Frame = 2 Query: 47 GLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSF-ETIHIQDALGHEFATRLGNVFTIGKGSKPWVSL 751 G +KHLK APK W + + KPS+G H L L LV+R+ LK A RE I+ +VLVDG+V D +P GFMD++ IPKT E +R+L D KGR +L+ + EE KLCK+ + + G +N +DG+ + + D I L + +++I + + G V++TGG++ G +G + ++ S TI I+++ EF T F +G+ + P +SL Sbjct: 5 GSRKHLKTYKAPKTWPIHPKEDTWTVKPSAGSHSIENSLSLTLVIRDILKLADNSREAKRIINSGNVLVDGRVIKDYKFPVGFMDIIEIPKTGEVYRVLLDKKGRLQLNKI--EENDSKLCKIVNKSTIKGGKIQVNLHDGKNVIIDENDYNVGDVIDLKVPDHEINEVFELKEGACVLITGGKHTGELGTVSEIIVNESSNPNTIIIENSAKDEFLTLKDYAFVVGEDA-PAISL 237
BLAST of CV884447 vs. ExPASy Swiss-Prot
Match: RS4E_ARCFU (30S ribosomal protein S4e OS=Archaeoglobus fulgidus GN=rps4e PE=3 SV=1) HSP 1 Score: 135.576 bits (340), Expect = 3.047e-31 Identity = 81/236 (34.32%), Postives = 133/236 (56.36%), Query Frame = 2 Query: 50 LKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGK--GSKPWVSL 751 ++ H KRL+APK + + + + KPS GPH ++E +PL++++R+ L+ A T RE I+ +LVDG VR D +P G DVV+IPK +++R+L+D KGR+ + E+A KL K+ + + G +N +DG I + K D+I L + E ++ D +KF+ G +VM+TGG + G +G IK+ + + S + + + T VF +GK KP + L Sbjct: 2 IELHQKRLSAPKTYKIPRKVSKWVVKPSPGPH-NKEAIPLLVLVRDFLELADTGREARRIISAGEILVDGVVRKDYKFPVGLFDVVTIPKLEKSYRILFDEKGRYIPKEV--EDADLKLYKITNKTLVRGGKVQLNLFDGTNILGSND-YKTKDSILLRIPEKEVVDHLKFEEGALVMITGGTHAGEIGRIKSYKIVRSSAPNLVTVEGEERDITTIEDYVFVVGKKDSDKPVIDL 233
BLAST of CV884447 vs. ExPASy Swiss-Prot
Match: RS4E_METMP (30S ribosomal protein S4e OS=Methanococcus maripaludis GN=rps4e PE=3 SV=1) HSP 1 Score: 134.806 bits (338), Expect = 5.197e-31 Identity = 78/244 (31.97%), Postives = 129/244 (52.87%), Query Frame = 2 Query: 44 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR--------TIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSL 751 +G +KHLKRL AP +W L + F +PS GPH + LPL+LV+R+ LKYA RE I+ +L+DG R + +PAG MDV+SIP+ +E + +L+D GR L + ++ KLCK+ + + G +N +DGR + + + K D++ + + E I + F G + +TGG++ G I E + + +++ G +F T VF +G+ +P +S+ Sbjct: 4 KGPRKHLKRLAAPANWQLPRKVKTFTVRPSPGPHSMDKSLPLLLVVRDVLKYADNAREAKKIIQTGKILIDGLKRKEYKHPAGLMDVLSIPEMDETYLVLFDESGRISLK--KTDKTDVKLCKIVNKTVVKGGNIQLNLHDGRNQIVKVSDAAKAEEDVYKTGDSVLISIPEQSIAGHVAFGEGKLAYITGGKHVGEFAKIVEVENRALYSDIVTLENKDGEKFKTVKPYVFIVGQ-DEPVISM 244
BLAST of CV884447 vs. ExPASy Swiss-Prot
Match: RS4E_IGNH4 (30S ribosomal protein S4e OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rps4e PE=3 SV=1) HSP 1 Score: 134.806 bits (338), Expect = 5.197e-31 Identity = 91/254 (35.83%), Postives = 137/254 (53.94%), Query Frame = 2 Query: 38 MAR--GLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLL-YDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRT--IRYPDPL-------IKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFET-IHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKG 760 MAR G K+HLKRL AP W + + +A KP GPH E +PL++++R+ L YA T RE ++ + + VDG+VR D +P G MDV+ I +E +R++ Y K + + EEAK K+C++ + + G +N +DGR IR DP K + + + E +I D++ F+ G I +V GRN GRVG I+ K G +T + ++D F T VF IGK +P + LP+G Sbjct: 1 MARVGGGKRHLKRLAAPAFWPIHRKEAVWAVKPRPGPHPIEESIPLLILVRDVLGYAETSREARKLIAEGRIKVDGRVRKDYKFPVGAMDVIEIVGADEYYRMIPYPVKYLVPMR-IDAEEAKKKICRIENKVTVKGGHVQLNLHDGRNVLIRVEDPRNPVEAQEYKTLGGLLITVPEQEILDYVPFEEGVIAIVKSGRNVGRVGRIEEIVKGMGRKKTLVKMRDVHDEVFYTVAEYVFPIGK-EEPLIKLPEG 252 The following BLAST results are available for this feature:
BLAST of CV884447 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 103
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CV884447 ID=CV884447; Name=CV884447; organism=Citrus sinensis; type=EST; length=786bpback to top |