CV884447
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CV884447 vs. ExPASy Swiss-Prot
Match: RS4E_THENV (30S ribosomal protein S4e OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rps4e PE=3 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 1.371e-23 Identity = 66/187 (35.29%), Postives = 99/187 (52.94%), Query Frame = 2 Query: 59 HLKRLNAPKHWMLD-KLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPL---IKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRG 607 HL+R +P W + K GG +A +PS GPH +PL LV+R+ L+YA T RE I+ + ++ VDG VR + +P G MDVV I T E +R++ D + + L + EEA KL +V + G ++ +DGR + P IK D++ DL+ + I +G +VT G N G Sbjct: 3 HLRRTTSPYWWPIPRKAGGVWAVRPSPGPHSLAYSIPLALVIRDVLRYAKTLREARMIISRGYIKVDGVVRRNYKFPVGLMDVVEIVPTGEIYRVVPDERSYYALVPITSEEADLKLLRVEGKTAVKGGRLQVHFHDGRNLIMPAETARQIKTFDSVLYDLKARTVRSHIPMRLGVYAVVTHGGNVG 189
BLAST of CV884447 vs. ExPASy Swiss-Prot
Match: RS4E_METHJ (30S ribosomal protein S4e OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps4e PE=3 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 1.161e-22 Identity = 70/230 (30.43%), Postives = 116/230 (50.43%), Query Frame = 2 Query: 59 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEE---NKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSF--ETIHIQDALGHEFATRLGNVFTIGKGS 733 HLKR+ +PK W + + F K S GPH ++ LP+++ R+++ +E +L +R ++V+G+ G D+VSIPK+ +++R+L D KGR + ++ A +L K+ + + G +N DG + D K+ D+I L L+E N+I D F GN+ M+ GG++ G VG I GS I ++ G F T V +G+ S Sbjct: 4 HLKRVVSPKSWGIPRKTDKFVTKTSPGPH-NKNALPIVVWARDQMGIVRNMKEAKHVLREREIIVNGRPVRHPDMGIGIFDIVSIPKSGKHYRILRDKKGRHVTIPIDEDAASSRLVKITNKTIVKGGRIQLNLRDGSNV-LTDKQYKSGDSIVLSLKEGQKNEIIDHFPFQPGNMAMIIGGKHSGVVGRIIEHIPVPGSLPNRVILKDESSGESFETIDEYVVMVGRES 231
BLAST of CV884447 vs. ExPASy Swiss-Prot
Match: RS4E_NANEQ (30S ribosomal protein S4e OS=Nanoarchaeum equitans GN=rps4e PE=3 SV=1) HSP 1 Score: 104.76 bits (260), Expect = 5.760e-22 Identity = 73/226 (32.30%), Postives = 110/226 (48.67%), Query Frame = 2 Query: 50 LKKHLKRLNAPKHWMLD-KLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCK-VRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTI 721 +K+HL+ L P+ W + K G + KPS GPH +P+ + LR+ L A REV +L VLVDG+ D +P G DV++IP+ NE +R+L D +G+ L + EEA K K +R V I Y T DGRT D K + + ++ KI + I + + G++ GR+G+IK K + I + G T L N+ + Sbjct: 5 IKRHLRSLAVPRTWPVPRKSRGYWIVKPSPGPHSKEFAMPIAVWLRDYLGLAENMREVRYLLNNGKVLVDGRPIKDYKFPVGLFDVLAIPEINEYYRVLLDERGKLYLKKIDKEEANIKYGKIIRKVSVRGGKIQYTLT-DGRTF-LGDNSYKTHYGVVYEIPNFKIREVIPLEKDRKAYIIRGKHTGRIGVIKEVIKTDMPWPNIVRLEVAGEVGETWLDNIIPV 228
BLAST of CV884447 vs. ExPASy Swiss-Prot
Match: RS4E_PYRAE (30S ribosomal protein S4e OS=Pyrobaculum aerophilum GN=rps4e PE=3 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 7.522e-22 Identity = 68/192 (35.42%), Postives = 95/192 (49.48%), Query Frame = 2 Query: 59 HLKRLNAPKHWMLD-KLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR---TIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGII 622 HL+R AP W + K GG + +PS GPH LPL L++R+ LKYA T E I+ + +V VDG VR D +P G MDV+ I T E +R++ D + L + EEA KL +V + G ++ +DGR T IK D++ DL I I +G +V G N G G + Sbjct: 3 HLRRTLAPAWWPIPRKKGGVWVVRPSPGPHSLAYSLPLALIIRDVLKYAKTMHEARYIISRGYVKVDGVVRRDYKFPVGLMDVIEIVPTGEVYRVVPDADKYYNLLPISTEEAALKLLRVEGKTMVKGGRIQLHFHDGRNLITTLEAGKQIKTFDSVLYDLRNKAIKAHIPLKLGVNAVVIHGSNVGFSGTL 194
BLAST of CV884447 vs. ExPASy Swiss-Prot
Match: RS4E_THEAC (30S ribosomal protein S4e OS=Thermoplasma acidophilum GN=rps4e PE=1 SV=2) HSP 1 Score: 102.834 bits (255), Expect = 2.189e-21 Identity = 71/232 (30.60%), Postives = 109/232 (46.98%), Query Frame = 2 Query: 65 KRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKG-SFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPK 757 KRL + + + + P P+ G H + + L+ ++R+ LK + RE IL V VDGK +K + GFMDV+ I E++R++Y+ +G L E A KL KVRS + T+DGRT D K D + + + KI++ IK GN +T G + + G I E +G S +H Q+ F+T +VF IG +V P+ Sbjct: 6 KRLMVSRQVKIPRKTYFWGPTPNPGMHPKDQSVTLLSIIRDYLKLSDKEREAARILANGLVKVDGKTVREKKFAVGFMDVIEI--NGESYRVVYNDQGALVLMKETKERASMKLLKVRSKVIAPGNRIQLGTHDGRTFITDDKSKKVGDVWAVSVPDMKISEIIKMQPGNKAYITAGSHVNQTGTISKIEAKEGSSANLVHFQEG----FSTIKDHVFMIGSSKFSFVLSPE 231
BLAST of CV884447 vs. ExPASy Swiss-Prot
Match: RS4E_METS5 (30S ribosomal protein S4e OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rps4e PE=3 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 4.876e-21 Identity = 70/239 (29.29%), Postives = 112/239 (46.86%), Query Frame = 2 Query: 59 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDP-----LIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREK---HKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSL 751 H+ RL AP K + + S GPH + +PL L+LR+ L + + +E I+ VLVDG+VR D YP G MDV++IP + R++ D + + +EE+KFKL ++ + + G+ N DGR + + T+K+ + +I F VM GG+N G +G +K + + + I+ G E+ T L N IG+ KP V + Sbjct: 3 HITRLEAPWFLRASKKEYKWTVRASPGPHPLGKSIPLGLLLRDYLAFTSSLKESKKIISDGKVLVDGRVRRDYKYPVGLMDVIAIPHADLYLRIVPDRARLLKPVKISEEESKFKLVRLLNKTLVKGGLLQFNLEDGRNLLISKESTEMFKLPTLTTLKISIPNQEILGVYGFKENVYVMAVGGKNAGIIGQLKRIQTSPYKTRRYSIVVIRSPDGSEYETNLENAMVIGE-EKPEVKV 240
BLAST of CV884447 vs. ExPASy Swiss-Prot
Match: RS4E_THEVO (30S ribosomal protein S4e OS=Thermoplasma volcanium GN=rps4e PE=3 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 1.853e-20 Identity = 67/221 (30.32%), Postives = 105/221 (47.51%), Query Frame = 2 Query: 65 KRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNRE-KHKGSFETIHIQDALGHEFATRLGNVFTIG 724 KRL P+ + + + P P G HK+ + L+ ++R+ L+ + RE IL V VDGKV ++ + GFMDV+ I + E++R++Y+ +G L S + A K +V++ + +DGR + D I D + L + KIT+ IK GN +TGG + G G I E K S +H + F T +VF IG Sbjct: 6 KRLMVPRTVKIPRKTYFWGPTPLPGRHKADHSVTLLTIIRDYLRLSDKEREATRILANGLVKVDGKVVKERKFGVGFMDVIEI--SGESYRVVYNNQGALVLVSESKDRANMKPLQVKNKVIAPGNKIQLGFHDGRVMVTEDRSISVGDVVIASLPDMKITEIIKMQPGNKAFITGGSHVGETGTISKIEIKESSSANLVHFDEG----FTTVKDHVFVIG 220
BLAST of CV884447 vs. ExPASy Swiss-Prot
Match: RS4E_PICTO (30S ribosomal protein S4e OS=Picrophilus torridus GN=rps4e PE=3 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 3.494e-19 Identity = 65/221 (29.41%), Postives = 110/221 (49.77%), Query Frame = 2 Query: 65 KRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFET-IHIQDALGHEFATRLGNVFTIG 724 K + AP+ + + +A G HK +PL++ LR+ LK RE+ IL V+VDGKV ++ GFMD +++ + ++ + YD KG+ + E KL +V+ + + G I+ +DG T+ IK D++ + + + +I D +KF GN V +TGG + G + IK+ E S E +H+ + F+T VF +G Sbjct: 6 KIMMAPRKLKIARKSRFWAVNSLPGSHKKDSSIPLLIALRDYLKLGDKEREITRILTNSLVMVDGKVVKERRRGIGFMDTLTV--SGNDYLVSYDRKGKLVILPKPGETKGLKLLRVKGKTYVKGGRIQISFHDGSTMVTDRKDIKNGDSVLVKIPKKEIVDVLKFAPGNRVFITGGSHVGEIATIKSIEIKSSSGENMVHMNEG----FSTVSSYVFVMG 220
BLAST of CV884447 vs. ExPASy Swiss-Prot
Match: RS4E_HALSA (30S ribosomal protein S4e OS=Halobacterium salinarium GN=rps4e PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 1.017e-18 Identity = 59/212 (27.83%), Postives = 98/212 (46.23%), Query Frame = 2 Query: 50 LKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGS-FETIHIQDALG 682 + H KRL+ PK W +++ F K +GPH +PL++VLR+ L+Y E + VLV+G D P G D+++ P +E +R+ D GR L + + A KL KV G +N +DG + + D++ +D + N+I +++ G +V G++ G +G I GS T+ + D G Sbjct: 1 MTNHQKRLSVPKSWPVERKTETFTAKAGAGPH-GESGVPLVVVLRDVLEYVDDTSEAQYAINTDGVLVNGDSVGDVNRPIGMFDILAFPDRDEYYRVFPDEGGRLGLTEIDADAAGSKLNKVTDKTTVSGGRTQLNFHDGSNLALDEDAYAGGDSVVVDTDTNEIVAHFQYEEGALVTAVAGQHAGDIGEIAEINVQPGSASNTVRVDDENG 211
BLAST of CV884447 vs. ExPASy Swiss-Prot
Match: RS4E_HALS3 (30S ribosomal protein S4e OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rps4e PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 1.017e-18 Identity = 59/212 (27.83%), Postives = 98/212 (46.23%), Query Frame = 2 Query: 50 LKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGS-FETIHIQDALG 682 + H KRL+ PK W +++ F K +GPH +PL++VLR+ L+Y E + VLV+G D P G D+++ P +E +R+ D GR L + + A KL KV G +N +DG + + D++ +D + N+I +++ G +V G++ G +G I GS T+ + D G Sbjct: 1 MTNHQKRLSVPKSWPVERKTETFTAKAGAGPH-GESGVPLVVVLRDVLEYVDDTSEAQYAINTDGVLVNGDSVGDVNRPIGMFDILAFPDRDEYYRVFPDEGGRLGLTEIDADAAGSKLNKVTDKTTVSGGRTQLNFHDGSNLALDEDAYAGGDSVVVDTDTNEIVAHFQYEEGALVTAVAGQHAGDIGEIAEINVQPGSASNTVRVDDENG 211 The following BLAST results are available for this feature:
BLAST of CV884447 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 103
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Sequences
The
following sequences are available for this feature:
EST sequence >CV884447 ID=CV884447; Name=CV884447; organism=Citrus sinensis; type=EST; length=786bpback to top |