CX043388

Overview
NameCX043388
Unique NameCX043388
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length683
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX043388 vs. ExPASy Swiss-Prot
Match: RS11_BEII9 (30S ribosomal protein S11 OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=rpsK PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.704e-11
Identity = 42/110 (38.18%), Postives = 61/110 (55.45%), Query Frame = -2 
Query:  230 VFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIP 559
            V GVAH+ ++FN+T I +TD  G        G M  K  R +S+PYAA +AA+D +++  E G+  L +++             G +SALRAL  +G  +  I DVTPIP
Sbjct:   17 VSGVAHVNSTFNNTMITITDAQGNTISWSSAGMMGFKGSR-KSTPYAAQMAAEDCARKAVEHGMRTLEVEVSG--------PGSGRESALRALQAAGFTVTSIRDVTPIP 117
[Close]
BLAST of CX043388 vs. ExPASy Swiss-Prot
Match: RS11_ACICJ (30S ribosomal protein S11 OS=Acidiphilium cryptum (strain JF-5) GN=rpsK PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.704e-11
Identity = 41/108 (37.96%), Postives = 58/108 (53.70%), Query Frame = -2 
Query:  230 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIP 553
            GVAH+ ASFN+T + ++D  G        G    K  R +S+PYAA +AA+D  ++ +E G+  L I++             G +SALRAL   G  I  I D+TPIP
Sbjct:   20 GVAHVLASFNNTMVTISDAQGNAISWSSAGSQGFKGSR-KSTPYAAQVAAEDAGRKAREHGMETLEIEVSG--------PGAGRESALRALQTIGFSITAIRDLTPIP 118
[Close]
BLAST of CX043388 vs. ExPASy Swiss-Prot
Match: RS11_STRU0 (30S ribosomal protein S11 OS=Streptococcus uberis (strain ATCC BAA-854 / 0140J) GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.144e-11
Identity = 37/108 (34.26%), Postives = 63/108 (58.33%), Query Frame = -2 
Query:  230 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIP 553
            GVAHI A+FN+T + +TD+ G        G +  K  R +S+P+AA +AA+  ++  +E G+  + + ++            G +SA+RALA +G+++  I DVTP+P
Sbjct:   17 GVAHIHATFNNTIVMITDVHGNALAWSSAGALGFKGSR-KSTPFAAQMAAEAAAKSAQEHGLKTVEVTVKG--------PGSGRESAIRALAAAGLEVTAIRDVTPVP 115
[Close]
BLAST of CX043388 vs. ExPASy Swiss-Prot
Match: RS11_STRS7 (30S ribosomal protein S11 OS=Streptococcus equi subsp. zooepidemicus (strain H70) GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.144e-11
Identity = 37/108 (34.26%), Postives = 63/108 (58.33%), Query Frame = -2 
Query:  230 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIP 553
            GVAHI A+FN+T + +TD+ G        G +  K  R +S+P+AA +AA+  ++  +E G+  + + ++            G +SA+RALA +G+++  I DVTP+P
Sbjct:   17 GVAHIHATFNNTIVMITDVHGNALAWSSAGALGFKGSR-KSTPFAAQMAAEAAAKSAQEHGLKTVEVTVKG--------PGSGRESAIRALAAAGLEVTAIRDVTPVP 115
[Close]
BLAST of CX043388 vs. ExPASy Swiss-Prot
Match: RS11_STRPM (30S ribosomal protein S11 OS=Streptococcus pyogenes serotype M28 GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.144e-11
Identity = 37/108 (34.26%), Postives = 63/108 (58.33%), Query Frame = -2 
Query:  230 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIP 553
            GVAHI A+FN+T + +TD+ G        G +  K  R +S+P+AA +AA+  ++  +E G+  + + ++            G +SA+RALA +G+++  I DVTP+P
Sbjct:   17 GVAHIHATFNNTIVMITDVHGNALAWSSAGALGFKGSR-KSTPFAAQMAAEAAAKSAQEHGLKTVEVTVKG--------PGSGRESAIRALAAAGLEVTAIRDVTPVP 115
[Close]
BLAST of CX043388 vs. ExPASy Swiss-Prot
Match: RS11_STRPG (30S ribosomal protein S11 OS=Streptococcus pyogenes serotype M5 (strain Manfredo) GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.144e-11
Identity = 37/108 (34.26%), Postives = 63/108 (58.33%), Query Frame = -2 
Query:  230 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIP 553
            GVAHI A+FN+T + +TD+ G        G +  K  R +S+P+AA +AA+  ++  +E G+  + + ++            G +SA+RALA +G+++  I DVTP+P
Sbjct:   17 GVAHIHATFNNTIVMITDVHGNALAWSSAGALGFKGSR-KSTPFAAQMAAEAAAKSAQEHGLKTVEVTVKG--------PGSGRESAIRALAAAGLEVTAIRDVTPVP 115
[Close]
BLAST of CX043388 vs. ExPASy Swiss-Prot
Match: RS11_STRPF (30S ribosomal protein S11 OS=Streptococcus pyogenes serotype M4 (strain MGAS10750) GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.144e-11
Identity = 37/108 (34.26%), Postives = 63/108 (58.33%), Query Frame = -2 
Query:  230 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIP 553
            GVAHI A+FN+T + +TD+ G        G +  K  R +S+P+AA +AA+  ++  +E G+  + + ++            G +SA+RALA +G+++  I DVTP+P
Sbjct:   17 GVAHIHATFNNTIVMITDVHGNALAWSSAGALGFKGSR-KSTPFAAQMAAEAAAKSAQEHGLKTVEVTVKG--------PGSGRESAIRALAAAGLEVTAIRDVTPVP 115
[Close]
BLAST of CX043388 vs. ExPASy Swiss-Prot
Match: RS11_STRPD (30S ribosomal protein S11 OS=Streptococcus pyogenes serotype M2 (strain MGAS10270) GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.144e-11
Identity = 37/108 (34.26%), Postives = 63/108 (58.33%), Query Frame = -2 
Query:  230 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIP 553
            GVAHI A+FN+T + +TD+ G        G +  K  R +S+P+AA +AA+  ++  +E G+  + + ++            G +SA+RALA +G+++  I DVTP+P
Sbjct:   17 GVAHIHATFNNTIVMITDVHGNALAWSSAGALGFKGSR-KSTPFAAQMAAEAAAKSAQEHGLKTVEVTVKG--------PGSGRESAIRALAAAGLEVTAIRDVTPVP 115
[Close]
BLAST of CX043388 vs. ExPASy Swiss-Prot
Match: RS11_STRPC (30S ribosomal protein S11 OS=Streptococcus pyogenes serotype M12 (strain MGAS9429) GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.144e-11
Identity = 37/108 (34.26%), Postives = 63/108 (58.33%), Query Frame = -2 
Query:  230 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIP 553
            GVAHI A+FN+T + +TD+ G        G +  K  R +S+P+AA +AA+  ++  +E G+  + + ++            G +SA+RALA +G+++  I DVTP+P
Sbjct:   17 GVAHIHATFNNTIVMITDVHGNALAWSSAGALGFKGSR-KSTPFAAQMAAEAAAKSAQEHGLKTVEVTVKG--------PGSGRESAIRALAAAGLEVTAIRDVTPVP 115
[Close]
BLAST of CX043388 vs. ExPASy Swiss-Prot
Match: RS11_STRPB (30S ribosomal protein S11 OS=Streptococcus pyogenes serotype M12 (strain MGAS2096) GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.144e-11
Identity = 37/108 (34.26%), Postives = 63/108 (58.33%), Query Frame = -2 
Query:  230 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIP 553
            GVAHI A+FN+T + +TD+ G        G +  K  R +S+P+AA +AA+  ++  +E G+  + + ++            G +SA+RALA +G+++  I DVTP+P
Sbjct:   17 GVAHIHATFNNTIVMITDVHGNALAWSSAGALGFKGSR-KSTPFAAQMAAEAAAKSAQEHGLKTVEVTVKG--------PGSGRESAIRALAAAGLEVTAIRDVTPVP 115
The following BLAST results are available for this feature:
BLAST of CX043388 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 227
Match NameE-valueIdentityDescription
RS11_BEII94.704e-1138.1830S ribosomal protein S11 OS=Beijerinckia indica s... [more]
RS11_ACICJ4.704e-1137.9630S ribosomal protein S11 OS=Acidiphilium cryptum ... [more]
RS11_STRU06.144e-1134.2630S ribosomal protein S11 OS=Streptococcus uberis ... [more]
RS11_STRS76.144e-1134.2630S ribosomal protein S11 OS=Streptococcus equi su... [more]
RS11_STRPM6.144e-1134.2630S ribosomal protein S11 OS=Streptococcus pyogene... [more]
RS11_STRPG6.144e-1134.2630S ribosomal protein S11 OS=Streptococcus pyogene... [more]
RS11_STRPF6.144e-1134.2630S ribosomal protein S11 OS=Streptococcus pyogene... [more]
RS11_STRPD6.144e-1134.2630S ribosomal protein S11 OS=Streptococcus pyogene... [more]
RS11_STRPC6.144e-1134.2630S ribosomal protein S11 OS=Streptococcus pyogene... [more]
RS11_STRPB6.144e-1134.2630S ribosomal protein S11 OS=Streptococcus pyogene... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_10G03_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-10G03-N6-1-7.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043388 ID=CX043388; Name=CX043388; organism=Citrus sinensis; type=EST; length=683bp
TTTTTAGTCTTGCCACTGTATAAACTTAATTGATCCGAAAGGCTAACACA
AAGGAATCCAAGACTACAGACATTCCAAACAACAAAATTGGGAAATAACT
CTTGCATCTAACAGAAGAGAGTGAAACTCTCTGTAACCACGGCATCATCT
TGAACGTTATGGATGGGTGTGAGGAAAAGAATTACAACCTTCTACCCCTT
CTACCACCCTTTCTGCGGGTACTGTCGGTGGGAATTGGAGTCACATCCTC
TATGCGGCCAATCTTCATTCCAGAACGAGCAAGAGCTCTAAGTGCTGACT
GAGCACCTGGACCAGGAGTTTTAGTTTTGTTACCCCCAGTAGCCCGGAGC
TTAATATGAAGAGCAGTAATGCCAAGCTCCTTGCATCGTTGAGAAACATC
TTGTGCTGCAAGCATAGCTGCATAAGGGGAGGATTCATCCCTGTCAGCTT
TAACCTTCATACCACCAGTAATGCGCACAAGAGTTTCTCTTCCAGACAAG
TCAGTCACATGAATGAAAGTGTCATTAAACGACGCAAAAATGTGGGCAAC
GCCAAATACATGCTCGCCATCTCTAACGGCAGGTCCAAGAGTAACATTTT
CCTCCTTAGGCTCTCTGGTCTTTCTTCTTGACATGGCTGCTGATGACACG
GAGAGTTGATCACAAAAGCCTCGAAATACACCT
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