CX043388

Overview
NameCX043388
Unique NameCX043388
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length683
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX043388 vs. ExPASy Swiss-Prot
Match: RS11_STRP8 (30S ribosomal protein S11 OS=Streptococcus pyogenes serotype M18 GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.144e-11
Identity = 37/108 (34.26%), Postives = 63/108 (58.33%), Query Frame = -2 
Query:  230 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIP 553
            GVAHI A+FN+T + +TD+ G        G +  K  R +S+P+AA +AA+  ++  +E G+  + + ++            G +SA+RALA +G+++  I DVTP+P
Sbjct:   17 GVAHIHATFNNTIVMITDVHGNALAWSSAGALGFKGSR-KSTPFAAQMAAEAAAKSAQEHGLKTVEVTVKG--------PGSGRESAIRALAAAGLEVTAIRDVTPVP 115
[Close]
BLAST of CX043388 vs. ExPASy Swiss-Prot
Match: RS11_STRP6 (30S ribosomal protein S11 OS=Streptococcus pyogenes serotype M6 GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.144e-11
Identity = 37/108 (34.26%), Postives = 63/108 (58.33%), Query Frame = -2 
Query:  230 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIP 553
            GVAHI A+FN+T + +TD+ G        G +  K  R +S+P+AA +AA+  ++  +E G+  + + ++            G +SA+RALA +G+++  I DVTP+P
Sbjct:   17 GVAHIHATFNNTIVMITDVHGNALAWSSAGALGFKGSR-KSTPFAAQMAAEAAAKSAQEHGLKTVEVTVKG--------PGSGRESAIRALAAAGLEVTAIRDVTPVP 115
[Close]
BLAST of CX043388 vs. ExPASy Swiss-Prot
Match: RS11_STRP3 (30S ribosomal protein S11 OS=Streptococcus pyogenes serotype M3 GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.144e-11
Identity = 37/108 (34.26%), Postives = 63/108 (58.33%), Query Frame = -2 
Query:  230 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIP 553
            GVAHI A+FN+T + +TD+ G        G +  K  R +S+P+AA +AA+  ++  +E G+  + + ++            G +SA+RALA +G+++  I DVTP+P
Sbjct:   17 GVAHIHATFNNTIVMITDVHGNALAWSSAGALGFKGSR-KSTPFAAQMAAEAAAKSAQEHGLKTVEVTVKG--------PGSGRESAIRALAAAGLEVTAIRDVTPVP 115
[Close]
BLAST of CX043388 vs. ExPASy Swiss-Prot
Match: RS11_STRP1 (30S ribosomal protein S11 OS=Streptococcus pyogenes serotype M1 GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.144e-11
Identity = 37/108 (34.26%), Postives = 63/108 (58.33%), Query Frame = -2 
Query:  230 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIP 553
            GVAHI A+FN+T + +TD+ G        G +  K  R +S+P+AA +AA+  ++  +E G+  + + ++            G +SA+RALA +G+++  I DVTP+P
Sbjct:   17 GVAHIHATFNNTIVMITDVHGNALAWSSAGALGFKGSR-KSTPFAAQMAAEAAAKSAQEHGLKTVEVTVKG--------PGSGRESAIRALAAAGLEVTAIRDVTPVP 115
[Close]
BLAST of CX043388 vs. ExPASy Swiss-Prot
Match: RS11_STREM (30S ribosomal protein S11 OS=Streptococcus equi subsp. zooepidemicus (strain MGCS10565) GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.144e-11
Identity = 37/108 (34.26%), Postives = 63/108 (58.33%), Query Frame = -2 
Query:  230 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIP 553
            GVAHI A+FN+T + +TD+ G        G +  K  R +S+P+AA +AA+  ++  +E G+  + + ++            G +SA+RALA +G+++  I DVTP+P
Sbjct:   17 GVAHIHATFNNTIVMITDVHGNALAWSSAGALGFKGSR-KSTPFAAQMAAEAAAKSAQEHGLKTVEVTVKG--------PGSGRESAIRALAAAGLEVTAIRDVTPVP 115
[Close]
BLAST of CX043388 vs. ExPASy Swiss-Prot
Match: RS11_STRE4 (30S ribosomal protein S11 OS=Streptococcus equi subsp. equi (strain 4047) GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.144e-11
Identity = 37/108 (34.26%), Postives = 63/108 (58.33%), Query Frame = -2 
Query:  230 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIP 553
            GVAHI A+FN+T + +TD+ G        G +  K  R +S+P+AA +AA+  ++  +E G+  + + ++            G +SA+RALA +G+++  I DVTP+P
Sbjct:   17 GVAHIHATFNNTIVMITDVHGNALAWSSAGALGFKGSR-KSTPFAAQMAAEAAAKSAQEHGLKTVEVTVKG--------PGSGRESAIRALAAAGLEVTAIRDVTPVP 115
[Close]
BLAST of CX043388 vs. ExPASy Swiss-Prot
Match: RS11_STRA5 (30S ribosomal protein S11 OS=Streptococcus agalactiae serotype V GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.144e-11
Identity = 37/108 (34.26%), Postives = 63/108 (58.33%), Query Frame = -2 
Query:  230 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIP 553
            GVAHI A+FN+T + +TD+ G        G +  K  R +S+P+AA +AA+  ++  +E G+  + + ++            G +SA+RALA +G+++  I DVTP+P
Sbjct:   17 GVAHIHATFNNTIVMITDVHGNALAWSSAGALGFKGSR-KSTPFAAQMAAEAAAKSAQEHGLKTVEVTVKG--------PGSGRESAIRALAAAGLEVTAIRDVTPVP 115
[Close]
BLAST of CX043388 vs. ExPASy Swiss-Prot
Match: RS11_STRA3 (30S ribosomal protein S11 OS=Streptococcus agalactiae serotype III GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.144e-11
Identity = 37/108 (34.26%), Postives = 63/108 (58.33%), Query Frame = -2 
Query:  230 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIP 553
            GVAHI A+FN+T + +TD+ G        G +  K  R +S+P+AA +AA+  ++  +E G+  + + ++            G +SA+RALA +G+++  I DVTP+P
Sbjct:   17 GVAHIHATFNNTIVMITDVHGNALAWSSAGALGFKGSR-KSTPFAAQMAAEAAAKSAQEHGLKTVEVTVKG--------PGSGRESAIRALAAAGLEVTAIRDVTPVP 115
[Close]
BLAST of CX043388 vs. ExPASy Swiss-Prot
Match: RS11_STRA1 (30S ribosomal protein S11 OS=Streptococcus agalactiae serotype Ia GN=rpsK PE=3 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.144e-11
Identity = 37/108 (34.26%), Postives = 63/108 (58.33%), Query Frame = -2 
Query:  230 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIP 553
            GVAHI A+FN+T + +TD+ G        G +  K  R +S+P+AA +AA+  ++  +E G+  + + ++            G +SA+RALA +G+++  I DVTP+P
Sbjct:   17 GVAHIHATFNNTIVMITDVHGNALAWSSAGALGFKGSR-KSTPFAAQMAAEAAAKSAQEHGLKTVEVTVKG--------PGSGRESAIRALAAAGLEVTAIRDVTPVP 115
[Close]
BLAST of CX043388 vs. ExPASy Swiss-Prot
Match: RS11_SINMW (30S ribosomal protein S11 OS=Sinorhizobium medicae (strain WSM419) GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.144e-11
Identity = 41/108 (37.96%), Postives = 61/108 (56.48%), Query Frame = -2 
Query:  230 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIP 553
            GVAH+ +SFN+T I +TD  G        G    K  R +S+P+AA +AA+D +++ +E G+ +L +++             G +SALRAL  +G  I  I DVTPIP
Sbjct:   19 GVAHVNSSFNNTMITITDAQGNAIAWSSAGAKGFKGSR-KSTPFAAQIAAEDCAKKAQEHGMKSLEVEV--------CGPGSGRESALRALQAAGFMITSIRDVTPIP 117
The following BLAST results are available for this feature:
BLAST of CX043388 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 227
Match NameE-valueIdentityDescription
RS11_STRP86.144e-1134.2630S ribosomal protein S11 OS=Streptococcus pyogene... [more]
RS11_STRP66.144e-1134.2630S ribosomal protein S11 OS=Streptococcus pyogene... [more]
RS11_STRP36.144e-1134.2630S ribosomal protein S11 OS=Streptococcus pyogene... [more]
RS11_STRP16.144e-1134.2630S ribosomal protein S11 OS=Streptococcus pyogene... [more]
RS11_STREM6.144e-1134.2630S ribosomal protein S11 OS=Streptococcus equi su... [more]
RS11_STRE46.144e-1134.2630S ribosomal protein S11 OS=Streptococcus equi su... [more]
RS11_STRA56.144e-1134.2630S ribosomal protein S11 OS=Streptococcus agalact... [more]
RS11_STRA36.144e-1134.2630S ribosomal protein S11 OS=Streptococcus agalact... [more]
RS11_STRA16.144e-1134.2630S ribosomal protein S11 OS=Streptococcus agalact... [more]
RS11_SINMW6.144e-1137.9630S ribosomal protein S11 OS=Sinorhizobium medicae... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_10G03_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-10G03-N6-1-7.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043388 ID=CX043388; Name=CX043388; organism=Citrus sinensis; type=EST; length=683bp
TTTTTAGTCTTGCCACTGTATAAACTTAATTGATCCGAAAGGCTAACACA
AAGGAATCCAAGACTACAGACATTCCAAACAACAAAATTGGGAAATAACT
CTTGCATCTAACAGAAGAGAGTGAAACTCTCTGTAACCACGGCATCATCT
TGAACGTTATGGATGGGTGTGAGGAAAAGAATTACAACCTTCTACCCCTT
CTACCACCCTTTCTGCGGGTACTGTCGGTGGGAATTGGAGTCACATCCTC
TATGCGGCCAATCTTCATTCCAGAACGAGCAAGAGCTCTAAGTGCTGACT
GAGCACCTGGACCAGGAGTTTTAGTTTTGTTACCCCCAGTAGCCCGGAGC
TTAATATGAAGAGCAGTAATGCCAAGCTCCTTGCATCGTTGAGAAACATC
TTGTGCTGCAAGCATAGCTGCATAAGGGGAGGATTCATCCCTGTCAGCTT
TAACCTTCATACCACCAGTAATGCGCACAAGAGTTTCTCTTCCAGACAAG
TCAGTCACATGAATGAAAGTGTCATTAAACGACGCAAAAATGTGGGCAAC
GCCAAATACATGCTCGCCATCTCTAACGGCAGGTCCAAGAGTAACATTTT
CCTCCTTAGGCTCTCTGGTCTTTCTTCTTGACATGGCTGCTGATGACACG
GAGAGTTGATCACAAAAGCCTCGAAATACACCT
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