CX043388

Overview
NameCX043388
Unique NameCX043388
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length683
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX043388 vs. ExPASy Swiss-Prot
Match: RS11_BURXL (30S ribosomal protein S11 OS=Burkholderia xenovorans (strain LB400) GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.144e-11
Identity = 40/108 (37.04%), Postives = 59/108 (54.63%), Query Frame = -2 
Query:  230 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIP 553
            GV H+ ASFN+T I +TD  G       +GG   K  R +S+P+AA +AA+   +   E G+  L ++++            G +SA+RAL   G+KI  I DVTP+P
Sbjct:   24 GVVHVHASFNNTIITITDRQGNALAWATSGGQGFKGSR-KSTPFAAQVAAESAGRVAMEYGVKNLEVRIKG--------PGPGRESAVRALHGLGIKITAISDVTPVP 122
[Close]
BLAST of CX043388 vs. ExPASy Swiss-Prot
Match: RS11_BORPD (30S ribosomal protein S11 OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.144e-11
Identity = 39/108 (36.11%), Postives = 60/108 (55.56%), Query Frame = -2 
Query:  230 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIP 553
            G+AH+ ASFN+T I +TD  G       +GG   K  R +S+P+AA +AA+   +   E GI  L ++++            G +S++RAL   G+KI  I D+TP+P
Sbjct:   23 GIAHVHASFNNTIITITDRQGNALSWATSGGAGFKGSR-KSTPFAAQVAAETAGRVALEYGIKTLEVRIKG--------PGPGRESSVRALNALGIKISSIADITPVP 121
[Close]
BLAST of CX043388 vs. ExPASy Swiss-Prot
Match: RS11_ACTSZ (30S ribosomal protein S11 OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.144e-11
Identity = 41/110 (37.27%), Postives = 60/110 (54.55%), Query Frame = -2 
Query:  230 VFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIP 559
            V GVAHI ASFN+T + +TD  G        GG   +  R +S+P+AA +AA+  ++  KE G+  L + ++            G +S +RAL  +G +I  I DVTPIP
Sbjct:   17 VDGVAHIHASFNNTIVTITDRQGNALAWATAGGSGFRGSR-KSTPFAAQVAAERCAEMVKEFGLKNLEVMVKG--------PGPGRESTIRALNAAGFRITNITDVTPIP 117
[Close]
BLAST of CX043388 vs. ExPASy Swiss-Prot
Match: RS11_THISH (30S ribosomal protein S11 OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.024e-11
Identity = 39/108 (36.11%), Postives = 60/108 (55.56%), Query Frame = -2 
Query:  230 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIP 553
            G+AHI+A+FN+T + +TD  G       +GG   +  R +S+P+AA +AA+      +E G+  L + +R            G +SA+RAL  +G KI  I D+TPIP
Sbjct:   19 GIAHIYATFNNTIVTITDRQGNTLSWATSGGSGFRGSR-KSTPFAAQVAAERAGTAAQEYGLKNLEVLVRG--------PGPGRESAVRALNNAGFKILNISDITPIP 117
[Close]
BLAST of CX043388 vs. ExPASy Swiss-Prot
Match: RS11_STRMU (30S ribosomal protein S11 OS=Streptococcus mutans GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.024e-11
Identity = 36/108 (33.33%), Postives = 63/108 (58.33%), Query Frame = -2 
Query:  230 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIP 553
            G+AHI A+FN+T + +TD+ G        G +  K  R +S+P+AA +AA+  ++  +E G+  + + ++            G +SA+RALA +G+++  I DVTP+P
Sbjct:   17 GIAHIHATFNNTIVMITDVHGNALAWSSAGALGFKGSR-KSTPFAAQMAAEAAAKSAQEHGLKTVEVTVKG--------PGSGRESAIRALAAAGLEVTSIRDVTPVP 115
[Close]
BLAST of CX043388 vs. ExPASy Swiss-Prot
Match: RS11_SACD2 (30S ribosomal protein S11 OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.024e-11
Identity = 40/110 (36.36%), Postives = 60/110 (54.55%), Query Frame = -2 
Query:  230 VFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIP 559
            V G+AHI ASFN+T + +TD  G        GG   +  R +S+P+AA +AA+   Q  ++ G+  L ++++            G +SA+RAL   G K+  I DVTPIP
Sbjct:   19 VDGIAHIHASFNNTIVTITDRQGNTLSWATAGGSGFRGSR-KSTPFAAQVAAERAGQAAQDYGLKNLDVEVKG--------PGPGRESAVRALNNIGYKVNNITDVTPIP 119
[Close]
BLAST of CX043388 vs. ExPASy Swiss-Prot
Match: RS11_PSEAE (30S ribosomal protein S11 OS=Pseudomonas aeruginosa GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.024e-11
Identity = 42/110 (38.18%), Postives = 59/110 (53.64%), Query Frame = -2 
Query:  230 VFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIP 559
            V G+AHI ASFN+T + +TD  G       +GG   +  R +S+P+AA +AA+   Q   E G+  L + ++            G +SA+RAL   G KI  I DVTPIP
Sbjct:   17 VDGIAHIHASFNNTIVTITDRQGNALSWATSGGSGFRGSR-KSTPFAAQVAAERAGQAALEYGLKNLDVNVKG--------PGPGRESAVRALNACGYKIASITDVTPIP 117
[Close]
BLAST of CX043388 vs. ExPASy Swiss-Prot
Match: RS11_PSEAB (30S ribosomal protein S11 OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.024e-11
Identity = 42/110 (38.18%), Postives = 59/110 (53.64%), Query Frame = -2 
Query:  230 VFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIP 559
            V G+AHI ASFN+T + +TD  G       +GG   +  R +S+P+AA +AA+   Q   E G+  L + ++            G +SA+RAL   G KI  I DVTPIP
Sbjct:   17 VDGIAHIHASFNNTIVTITDRQGNALSWATSGGSGFRGSR-KSTPFAAQVAAERAGQAALEYGLKNLDVNVKG--------PGPGRESAVRALNACGYKIASITDVTPIP 117
[Close]
BLAST of CX043388 vs. ExPASy Swiss-Prot
Match: RS11_PSEA8 (30S ribosomal protein S11 OS=Pseudomonas aeruginosa (strain LESB58) GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.024e-11
Identity = 42/110 (38.18%), Postives = 59/110 (53.64%), Query Frame = -2 
Query:  230 VFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIP 559
            V G+AHI ASFN+T + +TD  G       +GG   +  R +S+P+AA +AA+   Q   E G+  L + ++            G +SA+RAL   G KI  I DVTPIP
Sbjct:   17 VDGIAHIHASFNNTIVTITDRQGNALSWATSGGSGFRGSR-KSTPFAAQVAAERAGQAALEYGLKNLDVNVKG--------PGPGRESAVRALNACGYKIASITDVTPIP 117
[Close]
BLAST of CX043388 vs. ExPASy Swiss-Prot
Match: RS11_PSEA7 (30S ribosomal protein S11 OS=Pseudomonas aeruginosa (strain PA7) GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.024e-11
Identity = 42/110 (38.18%), Postives = 59/110 (53.64%), Query Frame = -2 
Query:  230 VFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIP 559
            V G+AHI ASFN+T + +TD  G       +GG   +  R +S+P+AA +AA+   Q   E G+  L + ++            G +SA+RAL   G KI  I DVTPIP
Sbjct:   17 VDGIAHIHASFNNTIVTITDRQGNALSWATSGGSGFRGSR-KSTPFAAQVAAERAGQAALEYGLKNLDVNVKG--------PGPGRESAVRALNACGYKIASITDVTPIP 117
The following BLAST results are available for this feature:
BLAST of CX043388 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 227
Match NameE-valueIdentityDescription
RS11_BURXL6.144e-1137.0430S ribosomal protein S11 OS=Burkholderia xenovora... [more]
RS11_BORPD6.144e-1136.1130S ribosomal protein S11 OS=Bordetella petrii (st... [more]
RS11_ACTSZ6.144e-1137.2730S ribosomal protein S11 OS=Actinobacillus succin... [more]
RS11_THISH8.024e-1136.1130S ribosomal protein S11 OS=Thioalkalivibrio sp. ... [more]
RS11_STRMU8.024e-1133.3330S ribosomal protein S11 OS=Streptococcus mutans ... [more]
RS11_SACD28.024e-1136.3630S ribosomal protein S11 OS=Saccharophagus degrad... [more]
RS11_PSEAE8.024e-1138.1830S ribosomal protein S11 OS=Pseudomonas aeruginos... [more]
RS11_PSEAB8.024e-1138.1830S ribosomal protein S11 OS=Pseudomonas aeruginos... [more]
RS11_PSEA88.024e-1138.1830S ribosomal protein S11 OS=Pseudomonas aeruginos... [more]
RS11_PSEA78.024e-1138.1830S ribosomal protein S11 OS=Pseudomonas aeruginos... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_10G03_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-10G03-N6-1-7.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043388 ID=CX043388; Name=CX043388; organism=Citrus sinensis; type=EST; length=683bp
TTTTTAGTCTTGCCACTGTATAAACTTAATTGATCCGAAAGGCTAACACA
AAGGAATCCAAGACTACAGACATTCCAAACAACAAAATTGGGAAATAACT
CTTGCATCTAACAGAAGAGAGTGAAACTCTCTGTAACCACGGCATCATCT
TGAACGTTATGGATGGGTGTGAGGAAAAGAATTACAACCTTCTACCCCTT
CTACCACCCTTTCTGCGGGTACTGTCGGTGGGAATTGGAGTCACATCCTC
TATGCGGCCAATCTTCATTCCAGAACGAGCAAGAGCTCTAAGTGCTGACT
GAGCACCTGGACCAGGAGTTTTAGTTTTGTTACCCCCAGTAGCCCGGAGC
TTAATATGAAGAGCAGTAATGCCAAGCTCCTTGCATCGTTGAGAAACATC
TTGTGCTGCAAGCATAGCTGCATAAGGGGAGGATTCATCCCTGTCAGCTT
TAACCTTCATACCACCAGTAATGCGCACAAGAGTTTCTCTTCCAGACAAG
TCAGTCACATGAATGAAAGTGTCATTAAACGACGCAAAAATGTGGGCAAC
GCCAAATACATGCTCGCCATCTCTAACGGCAGGTCCAAGAGTAACATTTT
CCTCCTTAGGCTCTCTGGTCTTTCTTCTTGACATGGCTGCTGATGACACG
GAGAGTTGATCACAAAAGCCTCGAAATACACCT
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