CX043388

Overview
NameCX043388
Unique NameCX043388
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length683
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043388 vs. ExPASy Swiss-Prot
Match: RS11_HAEDU (30S ribosomal protein S11 OS=Haemophilus ducreyi GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.024e-11
Identity = 40/108 (37.04%), Postives = 59/108 (54.63%), Query Frame = -2
Query:  230 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIP 553
            GVAHI ASFN+T + +TD  G        GG   +  R +S+P+AA +AA+  ++  KE G+  L + ++            G +S +RAL  +G +I  I DVTPIP
Sbjct:   19 GVAHIHASFNNTIVTITDRQGNALAWATAGGSGFRGSR-KSTPFAAQVAAERCAEAVKEFGLKNLEVMVKG--------PGPGRESTIRALNAAGFRITNITDVTPIP 117          
BLAST of CX043388 vs. ExPASy Swiss-Prot
Match: RS11_GLUDA (30S ribosomal protein S11 OS=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.024e-11
Identity = 42/121 (34.71%), Postives = 63/121 (52.07%), Query Frame = -2
Query:  230 PAVRDGEH---VFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIP 583
            P +R  E    + GVAH+ ++FN+T I ++D  G        G    K  R +S+PYAA +AA+D  ++ +E G+  L I++             G +SALRAL   G  I  I D+TP+P
Sbjct:    7 PRIRKKERKNIISGVAHVLSTFNNTMITISDAQGNAIAWSSAGAQGFKGSR-KSTPYAAQVAAEDAGRKAREHGMETLEIEVSG--------PGSGRESALRALQAVGFSITSIRDMTPVP 118          
BLAST of CX043388 vs. ExPASy Swiss-Prot
Match: RS11_GEOMG (30S ribosomal protein S11 OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.024e-11
Identity = 40/108 (37.04%), Postives = 63/108 (58.33%), Query Frame = -2
Query:  230 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIP 553
            GVAHI A+FN+T I +TD +G        GG   K  R +S+P+AA +AA+D +++ ++ G+ ++ + ++            G +SALRAL  +G  +  I DVTPIP
Sbjct:   21 GVAHIQATFNNTIITITDPAGNVVAWSSAGGKGFKGSR-KSTPFAAQVAAEDCAKKAQDHGMRSVEVYVKG--------PGSGRESALRALQAAGFHVNFIRDVTPIP 119          
BLAST of CX043388 vs. ExPASy Swiss-Prot
Match: RS11_AZOVD (30S ribosomal protein S11 OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.024e-11
Identity = 42/110 (38.18%), Postives = 59/110 (53.64%), Query Frame = -2
Query:  230 VFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIP 559
            V G+AHI ASFN+T + +TD  G       +GG   +  R +S+P+AA +AA+   Q   E G+  L + ++            G +SA+RAL   G KI  I DVTPIP
Sbjct:   17 VDGIAHIHASFNNTIVTITDRQGNALSWATSGGSGFRGSR-KSTPFAAQVAAERAGQAALEYGLKNLDVNVKG--------PGPGRESAVRALNACGYKIASITDVTPIP 117          
BLAST of CX043388 vs. ExPASy Swiss-Prot
Match: RS11_ACTPJ (30S ribosomal protein S11 OS=Actinobacillus pleuropneumoniae serotype 3 (strain JL03) GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.024e-11
Identity = 40/108 (37.04%), Postives = 59/108 (54.63%), Query Frame = -2
Query:  230 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIP 553
            GVAHI ASFN+T + +TD  G        GG   +  R +S+P+AA +AA+  ++  KE G+  L + ++            G +S +RAL  +G +I  I DVTPIP
Sbjct:   19 GVAHIHASFNNTIVTITDRQGNALAWATAGGSGFRGSR-KSTPFAAQVAAERCAEAVKEFGLKNLEVMVKG--------PGPGRESTIRALNAAGFRITNITDVTPIP 117          
BLAST of CX043388 vs. ExPASy Swiss-Prot
Match: RS11_ACTP7 (30S ribosomal protein S11 OS=Actinobacillus pleuropneumoniae serotype 7 (strain AP76) GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.024e-11
Identity = 40/108 (37.04%), Postives = 59/108 (54.63%), Query Frame = -2
Query:  230 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIP 553
            GVAHI ASFN+T + +TD  G        GG   +  R +S+P+AA +AA+  ++  KE G+  L + ++            G +S +RAL  +G +I  I DVTPIP
Sbjct:   19 GVAHIHASFNNTIVTITDRQGNALAWATAGGSGFRGSR-KSTPFAAQVAAERCAEAVKEFGLKNLEVMVKG--------PGPGRESTIRALNAAGFRITNITDVTPIP 117          
BLAST of CX043388 vs. ExPASy Swiss-Prot
Match: RS11_ACTP2 (30S ribosomal protein S11 OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.024e-11
Identity = 40/108 (37.04%), Postives = 59/108 (54.63%), Query Frame = -2
Query:  230 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIP 553
            GVAHI ASFN+T + +TD  G        GG   +  R +S+P+AA +AA+  ++  KE G+  L + ++            G +S +RAL  +G +I  I DVTPIP
Sbjct:   19 GVAHIHASFNNTIVTITDRQGNALAWATAGGSGFRGSR-KSTPFAAQVAAERCAEAVKEFGLKNLEVMVKG--------PGPGRESTIRALNAAGFRITNITDVTPIP 117          
The following BLAST results are available for this feature:
BLAST of CX043388 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 227
Match NameE-valueIdentityDescription
RS11_HAEDU8.024e-1137.0430S ribosomal protein S11 OS=Haemophilus ducreyi G... [more]
RS11_GLUDA8.024e-1134.7130S ribosomal protein S11 OS=Gluconacetobacter dia... [more]
RS11_GEOMG8.024e-1137.0430S ribosomal protein S11 OS=Geobacter metalliredu... [more]
RS11_AZOVD8.024e-1138.1830S ribosomal protein S11 OS=Azotobacter vinelandi... [more]
RS11_ACTPJ8.024e-1137.0430S ribosomal protein S11 OS=Actinobacillus pleuro... [more]
RS11_ACTP78.024e-1137.0430S ribosomal protein S11 OS=Actinobacillus pleuro... [more]
RS11_ACTP28.024e-1137.0430S ribosomal protein S11 OS=Actinobacillus pleuro... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_10G03_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-10G03-N6-1-7.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043388 ID=CX043388; Name=CX043388; organism=Citrus sinensis; type=EST; length=683bp
TTTTTAGTCTTGCCACTGTATAAACTTAATTGATCCGAAAGGCTAACACA
AAGGAATCCAAGACTACAGACATTCCAAACAACAAAATTGGGAAATAACT
CTTGCATCTAACAGAAGAGAGTGAAACTCTCTGTAACCACGGCATCATCT
TGAACGTTATGGATGGGTGTGAGGAAAAGAATTACAACCTTCTACCCCTT
CTACCACCCTTTCTGCGGGTACTGTCGGTGGGAATTGGAGTCACATCCTC
TATGCGGCCAATCTTCATTCCAGAACGAGCAAGAGCTCTAAGTGCTGACT
GAGCACCTGGACCAGGAGTTTTAGTTTTGTTACCCCCAGTAGCCCGGAGC
TTAATATGAAGAGCAGTAATGCCAAGCTCCTTGCATCGTTGAGAAACATC
TTGTGCTGCAAGCATAGCTGCATAAGGGGAGGATTCATCCCTGTCAGCTT
TAACCTTCATACCACCAGTAATGCGCACAAGAGTTTCTCTTCCAGACAAG
TCAGTCACATGAATGAAAGTGTCATTAAACGACGCAAAAATGTGGGCAAC
GCCAAATACATGCTCGCCATCTCTAACGGCAGGTCCAAGAGTAACATTTT
CCTCCTTAGGCTCTCTGGTCTTTCTTCTTGACATGGCTGCTGATGACACG
GAGAGTTGATCACAAAAGCCTCGAAATACACCT
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