CX043388
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX043388 vs. ExPASy Swiss-Prot
Match: RS11_HAEDU (30S ribosomal protein S11 OS=Haemophilus ducreyi GN=rpsK PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 8.024e-11 Identity = 40/108 (37.04%), Postives = 59/108 (54.63%), Query Frame = -2 Query: 230 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIP 553 GVAHI ASFN+T + +TD G GG + R +S+P+AA +AA+ ++ KE G+ L + ++ G +S +RAL +G +I I DVTPIP Sbjct: 19 GVAHIHASFNNTIVTITDRQGNALAWATAGGSGFRGSR-KSTPFAAQVAAERCAEAVKEFGLKNLEVMVKG--------PGPGRESTIRALNAAGFRITNITDVTPIP 117
BLAST of CX043388 vs. ExPASy Swiss-Prot
Match: RS11_GLUDA (30S ribosomal protein S11 OS=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) GN=rpsK PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 8.024e-11 Identity = 42/121 (34.71%), Postives = 63/121 (52.07%), Query Frame = -2 Query: 230 PAVRDGEH---VFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIP 583 P +R E + GVAH+ ++FN+T I ++D G G K R +S+PYAA +AA+D ++ +E G+ L I++ G +SALRAL G I I D+TP+P Sbjct: 7 PRIRKKERKNIISGVAHVLSTFNNTMITISDAQGNAIAWSSAGAQGFKGSR-KSTPYAAQVAAEDAGRKAREHGMETLEIEVSG--------PGSGRESALRALQAVGFSITSIRDMTPVP 118
BLAST of CX043388 vs. ExPASy Swiss-Prot
Match: RS11_GEOMG (30S ribosomal protein S11 OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=rpsK PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 8.024e-11 Identity = 40/108 (37.04%), Postives = 63/108 (58.33%), Query Frame = -2 Query: 230 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIP 553 GVAHI A+FN+T I +TD +G GG K R +S+P+AA +AA+D +++ ++ G+ ++ + ++ G +SALRAL +G + I DVTPIP Sbjct: 21 GVAHIQATFNNTIITITDPAGNVVAWSSAGGKGFKGSR-KSTPFAAQVAAEDCAKKAQDHGMRSVEVYVKG--------PGSGRESALRALQAAGFHVNFIRDVTPIP 119
BLAST of CX043388 vs. ExPASy Swiss-Prot
Match: RS11_AZOVD (30S ribosomal protein S11 OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=rpsK PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 8.024e-11 Identity = 42/110 (38.18%), Postives = 59/110 (53.64%), Query Frame = -2 Query: 230 VFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIP 559 V G+AHI ASFN+T + +TD G +GG + R +S+P+AA +AA+ Q E G+ L + ++ G +SA+RAL G KI I DVTPIP Sbjct: 17 VDGIAHIHASFNNTIVTITDRQGNALSWATSGGSGFRGSR-KSTPFAAQVAAERAGQAALEYGLKNLDVNVKG--------PGPGRESAVRALNACGYKIASITDVTPIP 117
BLAST of CX043388 vs. ExPASy Swiss-Prot
Match: RS11_ACTPJ (30S ribosomal protein S11 OS=Actinobacillus pleuropneumoniae serotype 3 (strain JL03) GN=rpsK PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 8.024e-11 Identity = 40/108 (37.04%), Postives = 59/108 (54.63%), Query Frame = -2 Query: 230 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIP 553 GVAHI ASFN+T + +TD G GG + R +S+P+AA +AA+ ++ KE G+ L + ++ G +S +RAL +G +I I DVTPIP Sbjct: 19 GVAHIHASFNNTIVTITDRQGNALAWATAGGSGFRGSR-KSTPFAAQVAAERCAEAVKEFGLKNLEVMVKG--------PGPGRESTIRALNAAGFRITNITDVTPIP 117
BLAST of CX043388 vs. ExPASy Swiss-Prot
Match: RS11_ACTP7 (30S ribosomal protein S11 OS=Actinobacillus pleuropneumoniae serotype 7 (strain AP76) GN=rpsK PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 8.024e-11 Identity = 40/108 (37.04%), Postives = 59/108 (54.63%), Query Frame = -2 Query: 230 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIP 553 GVAHI ASFN+T + +TD G GG + R +S+P+AA +AA+ ++ KE G+ L + ++ G +S +RAL +G +I I DVTPIP Sbjct: 19 GVAHIHASFNNTIVTITDRQGNALAWATAGGSGFRGSR-KSTPFAAQVAAERCAEAVKEFGLKNLEVMVKG--------PGPGRESTIRALNAAGFRITNITDVTPIP 117
BLAST of CX043388 vs. ExPASy Swiss-Prot
Match: RS11_ACTP2 (30S ribosomal protein S11 OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=rpsK PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 8.024e-11 Identity = 40/108 (37.04%), Postives = 59/108 (54.63%), Query Frame = -2 Query: 230 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIP 553 GVAHI ASFN+T + +TD G GG + R +S+P+AA +AA+ ++ KE G+ L + ++ G +S +RAL +G +I I DVTPIP Sbjct: 19 GVAHIHASFNNTIVTITDRQGNALAWATAGGSGFRGSR-KSTPFAAQVAAERCAEAVKEFGLKNLEVMVKG--------PGPGRESTIRALNAAGFRITNITDVTPIP 117 The following BLAST results are available for this feature:
BLAST of CX043388 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 227
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Sequences
The
following sequences are available for this feature:
EST sequence >CX043388 ID=CX043388; Name=CX043388; organism=Citrus sinensis; type=EST; length=683bpback to top |