CV884438

Overview
NameCV884438
Unique NameCV884438
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length161
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884438 vs. ExPASy Swiss-Prot
Match: EF1A_SOYBN (Elongation factor 1-alpha OS=Glycine max GN=TEFS1 PE=3 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 1.854e-17
Identity = 43/45 (95.56%), Postives = 44/45 (97.78%), Query Frame = -1
Query:   24 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTRGVKQMI 158
            GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALL+FT GVKQMI
Sbjct:  105 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLSFTLGVKQMI 149          
BLAST of CV884438 vs. ExPASy Swiss-Prot
Match: EF1A2_HORVU (Elongation factor 1-alpha OS=Hordeum vulgare GN=BLT63 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.162e-17
Identity = 43/45 (95.56%), Postives = 43/45 (95.56%), Query Frame = -1
Query:   24 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTRGVKQMI 158
            GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFT GVK MI
Sbjct:  105 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKHMI 149          
BLAST of CV884438 vs. ExPASy Swiss-Prot
Match: EF1A1_DAUCA (Elongation factor 1-alpha OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.162e-17
Identity = 43/45 (95.56%), Postives = 43/45 (95.56%), Query Frame = -1
Query:   24 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTRGVKQMI 158
            GTSQADCAVLIID TTGGFEAGISKDGQTREHALLAFT GVKQMI
Sbjct:  105 GTSQADCAVLIIDPTTGGFEAGISKDGQTREHALLAFTLGVKQMI 149          
BLAST of CV884438 vs. ExPASy Swiss-Prot
Match: EF1A_EUGGR (Elongation factor 1-alpha OS=Euglena gracilis GN=TEF PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.199e-17
Identity = 42/47 (89.36%), Postives = 44/47 (93.62%), Query Frame = -1
Query:   18 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTRGVKQMIAA 158
            GTSQAD AVL+IDSTTGGFEAGISKDGQTREHALLA+T GVKQMI A
Sbjct:  105 GTSQADAAVLVIDSTTGGFEAGISKDGQTREHALLAYTLGVKQMIVA 151          
BLAST of CV884438 vs. ExPASy Swiss-Prot
Match: EF1A1_HORVU (Elongation factor 1-alpha OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.049e-16
Identity = 42/45 (93.33%), Postives = 43/45 (95.56%), Query Frame = -1
Query:   24 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTRGVKQMI 158
            GTSQADCAVLIIDSTTG F+AGISKDGQTREHALLAFT GVKQMI
Sbjct:  105 GTSQADCAVLIIDSTTGVFQAGISKDGQTREHALLAFTLGVKQMI 149          
BLAST of CV884438 vs. ExPASy Swiss-Prot
Match: EF1A_HYDAT (Elongation factor 1-alpha OS=Hydra attenuata PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.959e-15
Identity = 40/47 (85.11%), Postives = 43/47 (91.49%), Query Frame = -1
Query:   18 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTRGVKQMIAA 158
            GTSQADCAVLI+ S+TG FEAGISK+GQTREHALLAFT GVKQMI A
Sbjct:  106 GTSQADCAVLIVASSTGEFEAGISKNGQTREHALLAFTLGVKQMIVA 152          
BLAST of CV884438 vs. ExPASy Swiss-Prot
Match: EF1A_COCIM (Elongation factor 1-alpha OS=Coccidioides immitis GN=TEF PE=2 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 8.610e-15
Identity = 39/47 (82.98%), Postives = 42/47 (89.36%), Query Frame = -1
Query:   18 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTRGVKQMIAA 158
            GTSQADCA+LII + TG FEAGISKDGQTREHALLAFT GVKQ+I A
Sbjct:  106 GTSQADCAILIIAAGTGEFEAGISKDGQTREHALLAFTLGVKQLIVA 152          
BLAST of CV884438 vs. ExPASy Swiss-Prot
Match: EF1A_ASPOR (Elongation factor 1-alpha OS=Aspergillus oryzae GN=tef1 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.610e-15
Identity = 39/47 (82.98%), Postives = 42/47 (89.36%), Query Frame = -1
Query:   18 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTRGVKQMIAA 158
            GTSQADCA+LII S TG FEAGISKDGQTREHALLAFT GV+Q+I A
Sbjct:  106 GTSQADCAILIIASGTGEFEAGISKDGQTREHALLAFTLGVRQLIVA 152          
BLAST of CV884438 vs. ExPASy Swiss-Prot
Match: EF1A1_SCHPO (Elongation factor 1-alpha-A OS=Schizosaccharomyces pombe GN=tef1a PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 1.469e-14
Identity = 39/47 (82.98%), Postives = 41/47 (87.23%), Query Frame = -1
Query:   18 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTRGVKQMIAA 158
            GTSQADCAVLII   TG FEAGISKDGQTREHALLA+T GVKQ+I A
Sbjct:  105 GTSQADCAVLIIGGGTGEFEAGISKDGQTREHALLAYTLGVKQLIVA 151          
BLAST of CV884438 vs. ExPASy Swiss-Prot
Match: EF1A_TRIRE (Elongation factor 1-alpha OS=Trichoderma reesei GN=tef1 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.918e-14
Identity = 38/47 (80.85%), Postives = 42/47 (89.36%), Query Frame = -1
Query:   18 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTRGVKQMIAA 158
            GTSQADCA+LII + TG FEAGISKDGQTREHALLA+T GVKQ+I A
Sbjct:  106 GTSQADCAILIIAAGTGEFEAGISKDGQTREHALLAYTLGVKQLIVA 152          
The following BLAST results are available for this feature:
BLAST of CV884438 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 95
Match NameE-valueIdentityDescription
EF1A_SOYBN1.854e-1795.56Elongation factor 1-alpha OS=Glycine max GN=TEFS1 ... [more]
EF1A2_HORVU3.162e-1795.56Elongation factor 1-alpha OS=Hordeum vulgare GN=BL... [more]
EF1A1_DAUCA3.162e-1795.56Elongation factor 1-alpha OS=Daucus carota PE=3 SV... [more]
EF1A_EUGGR9.199e-1789.36Elongation factor 1-alpha OS=Euglena gracilis GN=T... [more]
EF1A1_HORVU2.049e-1693.33Elongation factor 1-alpha OS=Hordeum vulgare PE=1 ... [more]
EF1A_HYDAT2.959e-1585.11Elongation factor 1-alpha OS=Hydra attenuata PE=2 ... [more]
EF1A_COCIM8.610e-1582.98Elongation factor 1-alpha OS=Coccidioides immitis ... [more]
EF1A_ASPOR8.610e-1582.98Elongation factor 1-alpha OS=Aspergillus oryzae GN... [more]
EF1A1_SCHPO1.469e-1482.98Elongation factor 1-alpha-A OS=Schizosaccharomyces... [more]
EF1A_TRIRE1.918e-1480.85Elongation factor 1-alpha OS=Trichoderma reesei GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_003D11_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_003_T7_D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884438 ID=CV884438; Name=CV884438; organism=Citrus sinensis; type=EST; length=161bp
TGGCGTCCATCTTGTTCAGCAGCAATCATCTGCTTCACACCACGGGTGAA
AGCAAGCAAAGCATGCTCACGAGTCTGACCATCCTTGGAGATACCAGCTT
CAAAACCACCGGTGGTGGAGTCAATGATGAGGACGGCACAGTCAGCCTGT
GAGGTACCCCT
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