CV884438

Overview
NameCV884438
Unique NameCV884438
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length161
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11121 contig Csv1_Contig11121:393..553. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884438 vs. ExPASy Swiss-Prot
Match: EF1A_CANAL (Elongation factor 1-alpha OS=Candida albicans GN=TEF1 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.505e-14
Identity = 38/47 (80.85%), Postives = 41/47 (87.23%), Query Frame = -1
Query:   18 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTRGVKQMIAA 158
            GTSQADCA+LII   TG FEAGISKDGQTREHALLA+T GVKQ+I A
Sbjct:  105 GTSQADCAILIIAGGTGEFEAGISKDGQTREHALLAYTLGVKQLIVA 151          
BLAST of CV884438 vs. ExPASy Swiss-Prot
Match: EF1A_ARXAD (Elongation factor 1-alpha OS=Arxula adeninivorans GN=TEF PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.505e-14
Identity = 38/47 (80.85%), Postives = 41/47 (87.23%), Query Frame = -1
Query:   18 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTRGVKQMIAA 158
            GTSQADCA+LII   TG FEAGISKDGQTREHALLAFT GV+Q+I A
Sbjct:  105 GTSQADCAILIIAGGTGEFEAGISKDGQTREHALLAFTLGVRQLIVA 151          
BLAST of CV884438 vs. ExPASy Swiss-Prot
Match: EF1A3_RHIRA (Elongation factor 1-alpha OS=Rhizomucor racemosus GN=TEF-3 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.505e-14
Identity = 38/47 (80.85%), Postives = 41/47 (87.23%), Query Frame = -1
Query:   18 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTRGVKQMIAA 158
            GTSQADCA+LII   TG FEAGISKDGQTREHALLAFT GV+Q+I A
Sbjct:  105 GTSQADCAILIIAGGTGEFEAGISKDGQTREHALLAFTLGVRQLIVA 151          
BLAST of CV884438 vs. ExPASy Swiss-Prot
Match: EF1A_YARLI (Elongation factor 1-alpha OS=Yarrowia lipolytica GN=TEF PE=2 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 4.273e-14
Identity = 38/47 (80.85%), Postives = 40/47 (85.11%), Query Frame = -1
Query:   18 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTRGVKQMIAA 158
            GTSQADCA+LII    G FEAGISKDGQTREHALLAFT GVKQ+I A
Sbjct:  105 GTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVKQLIVA 151          
BLAST of CV884438 vs. ExPASy Swiss-Prot
Match: EF1A_PICGU (Elongation factor 1-alpha OS=Pichia guilliermondii GN=TEF1 PE=3 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 5.581e-14
Identity = 37/47 (78.72%), Postives = 41/47 (87.23%), Query Frame = -1
Query:   18 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTRGVKQMIAA 158
            GTSQADCA+LII   TG FEAGISKDGQTREHALLA+T GV+Q+I A
Sbjct:  105 GTSQADCAILIIAGGTGEFEAGISKDGQTREHALLAYTLGVRQLIVA 151          
BLAST of CV884438 vs. ExPASy Swiss-Prot
Match: EF1A_ABSGL (Elongation factor 1-alpha OS=Absidia glauca GN=TEF-1 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.581e-14
Identity = 37/47 (78.72%), Postives = 41/47 (87.23%), Query Frame = -1
Query:   18 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTRGVKQMIAA 158
            GTSQADC +LII + TG FEAGISKDGQTREHALLAFT GV+Q+I A
Sbjct:  105 GTSQADCGILIIAAGTGEFEAGISKDGQTREHALLAFTLGVRQLIVA 151          
BLAST of CV884438 vs. ExPASy Swiss-Prot
Match: EF1A_YEAST (Elongation factor 1-alpha OS=Saccharomyces cerevisiae GN=TEF1 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.520e-14
Identity = 37/47 (78.72%), Postives = 40/47 (85.11%), Query Frame = -1
Query:   18 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTRGVKQMIAA 158
            GTSQADCA+LII    G FEAGISKDGQTREHALLAFT GV+Q+I A
Sbjct:  105 GTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVA 151          
BLAST of CV884438 vs. ExPASy Swiss-Prot
Match: EF1A_SPOFR (Elongation factor 1-alpha (Fragment) OS=Spodoptera frugiperda PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.520e-14
Identity = 37/45 (82.22%), Postives = 41/45 (91.11%), Query Frame = -1
Query:   24 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTRGVKQMI 158
            GTSQADCAVLI+ + TG FEAGISK+GQTREHALLAFT GVKQ+I
Sbjct:   91 GTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLI 135          
BLAST of CV884438 vs. ExPASy Swiss-Prot
Match: EF1A_SCHCO (Elongation factor 1-alpha OS=Schizophyllum commune GN=TEF1 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.520e-14
Identity = 37/47 (78.72%), Postives = 40/47 (85.11%), Query Frame = -1
Query:   18 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTRGVKQMIAA 158
            GTSQADCA+L I   TG FEAGISKDGQTREHALLAFT GV+Q+I A
Sbjct:  105 GTSQADCAILTIAGGTGEFEAGISKDGQTREHALLAFTLGVRQLIVA 151          
BLAST of CV884438 vs. ExPASy Swiss-Prot
Match: EF1A_RHYAM (Elongation factor 1-alpha (Fragment) OS=Rhynchosciara americana PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.520e-14
Identity = 37/45 (82.22%), Postives = 41/45 (91.11%), Query Frame = -1
Query:   24 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTRGVKQMI 158
            GTSQADCAVLI+ + TG FEAGISK+GQTREHALLAFT GVKQ+I
Sbjct:   54 GTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLI 98          
The following BLAST results are available for this feature:
BLAST of CV884438 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 95
Match NameE-valueIdentityDescription
EF1A_CANAL2.505e-1480.85Elongation factor 1-alpha OS=Candida albicans GN=T... [more]
EF1A_ARXAD2.505e-1480.85Elongation factor 1-alpha OS=Arxula adeninivorans ... [more]
EF1A3_RHIRA2.505e-1480.85Elongation factor 1-alpha OS=Rhizomucor racemosus ... [more]
EF1A_YARLI4.273e-1480.85Elongation factor 1-alpha OS=Yarrowia lipolytica G... [more]
EF1A_PICGU5.581e-1478.72Elongation factor 1-alpha OS=Pichia guilliermondii... [more]
EF1A_ABSGL5.581e-1478.72Elongation factor 1-alpha OS=Absidia glauca GN=TEF... [more]
EF1A_YEAST9.520e-1478.72Elongation factor 1-alpha OS=Saccharomyces cerevis... [more]
EF1A_SPOFR9.520e-1482.22Elongation factor 1-alpha (Fragment) OS=Spodoptera... [more]
EF1A_SCHCO9.520e-1478.72Elongation factor 1-alpha OS=Schizophyllum commune... [more]
EF1A_RHYAM9.520e-1482.22Elongation factor 1-alpha (Fragment) OS=Rhynchosci... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_003D11_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_003_T7_D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884438 ID=CV884438; Name=CV884438; organism=Citrus sinensis; type=EST; length=161bp
TGGCGTCCATCTTGTTCAGCAGCAATCATCTGCTTCACACCACGGGTGAA
AGCAAGCAAAGCATGCTCACGAGTCTGACCATCCTTGGAGATACCAGCTT
CAAAACCACCGGTGGTGGAGTCAATGATGAGGACGGCACAGTCAGCCTGT
GAGGTACCCCT
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