CV884438

Overview
NameCV884438
Unique NameCV884438
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length161
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CV884438 vs. ExPASy Swiss-Prot
Match: EF1A_HELZE (Elongation factor 1-alpha (Fragment) OS=Heliothis zea PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.520e-14
Identity = 37/45 (82.22%), Postives = 41/45 (91.11%), Query Frame = -1 
Query:   24 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTRGVKQMI 158
            GTSQADCAVLI+ + TG FEAGISK+GQTREHALLAFT GVKQ+I
Sbjct:   91 GTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLI 135
[Close]
BLAST of CV884438 vs. ExPASy Swiss-Prot
Match: EF1A_HELVI (Elongation factor 1-alpha (Fragment) OS=Heliothis virescens PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.520e-14
Identity = 37/45 (82.22%), Postives = 41/45 (91.11%), Query Frame = -1 
Query:   24 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTRGVKQMI 158
            GTSQADCAVLI+ + TG FEAGISK+GQTREHALLAFT GVKQ+I
Sbjct:   91 GTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLI 135
[Close]
BLAST of CV884438 vs. ExPASy Swiss-Prot
Match: EF1A_HELGL (Elongation factor 1-alpha (Fragment) OS=Helicoverpa gelotopoeon PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.520e-14
Identity = 37/45 (82.22%), Postives = 41/45 (91.11%), Query Frame = -1 
Query:   24 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTRGVKQMI 158
            GTSQADCAVLI+ + TG FEAGISK+GQTREHALLAFT GVKQ+I
Sbjct:   91 GTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLI 135
[Close]
BLAST of CV884438 vs. ExPASy Swiss-Prot
Match: EF1A_HELDI (Elongation factor 1-alpha (Fragment) OS=Heliocheilus discalis PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.520e-14
Identity = 37/45 (82.22%), Postives = 41/45 (91.11%), Query Frame = -1 
Query:   24 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTRGVKQMI 158
            GTSQADCAVLI+ + TG FEAGISK+GQTREHALLAFT GVKQ+I
Sbjct:   91 GTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLI 135
[Close]
BLAST of CV884438 vs. ExPASy Swiss-Prot
Match: EF1A_HELAM (Elongation factor 1-alpha (Fragment) OS=Helicoverpa armigera PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.520e-14
Identity = 37/45 (82.22%), Postives = 41/45 (91.11%), Query Frame = -1 
Query:   24 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTRGVKQMI 158
            GTSQADCAVLI+ + TG FEAGISK+GQTREHALLAFT GVKQ+I
Sbjct:   91 GTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLI 135
[Close]
BLAST of CV884438 vs. ExPASy Swiss-Prot
Match: EF1A_HELAL (Elongation factor 1-alpha (Fragment) OS=Heliocheilus albipunctella PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.520e-14
Identity = 37/45 (82.22%), Postives = 41/45 (91.11%), Query Frame = -1 
Query:   24 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTRGVKQMI 158
            GTSQADCAVLI+ + TG FEAGISK+GQTREHALLAFT GVKQ+I
Sbjct:   91 GTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLI 135
[Close]
BLAST of CV884438 vs. ExPASy Swiss-Prot
Match: EF1A_CRYNE (Elongation factor 1-alpha OS=Cryptococcus neoformans GN=TEF1 PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 9.520e-14
Identity = 37/47 (78.72%), Postives = 41/47 (87.23%), Query Frame = -1 
Query:   18 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTRGVKQMIAA 158
            GTSQADCA+LII +  G FEAGISKDGQTREHALLAFT GV+Q+I A
Sbjct:  105 GTSQADCAILIIATGIGEFEAGISKDGQTREHALLAFTLGVRQLIVA 151
[Close]
BLAST of CV884438 vs. ExPASy Swiss-Prot
Match: EF1A_BOMMO (Elongation factor 1-alpha OS=Bombyx mori PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.520e-14
Identity = 37/45 (82.22%), Postives = 41/45 (91.11%), Query Frame = -1 
Query:   24 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTRGVKQMI 158
            GTSQADCAVLI+ + TG FEAGISK+GQTREHALLAFT GVKQ+I
Sbjct:  105 GTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLI 149
[Close]
BLAST of CV884438 vs. ExPASy Swiss-Prot
Match: EF1A_ASHGO (Elongation factor 1-alpha OS=Ashbya gossypii GN=TEF PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.520e-14
Identity = 37/47 (78.72%), Postives = 40/47 (85.11%), Query Frame = -1 
Query:   18 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTRGVKQMIAA 158
            GTSQADCA+LII    G FEAGISKDGQTREHALLA+T GVKQ+I A
Sbjct:  105 GTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAYTLGVKQLIVA 151
[Close]
BLAST of CV884438 vs. ExPASy Swiss-Prot
Match: EF1A_ANIIF (Elongation factor 1-alpha (Fragment) OS=Anicla infecta PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.520e-14
Identity = 37/45 (82.22%), Postives = 41/45 (91.11%), Query Frame = -1 
Query:   24 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTRGVKQMI 158
            GTSQADCAVLI+ + TG FEAGISK+GQTREHALLAFT GVKQ+I
Sbjct:   91 GTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLI 135
The following BLAST results are available for this feature:
BLAST of CV884438 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 95
Match NameE-valueIdentityDescription
EF1A_HELZE9.520e-1482.22Elongation factor 1-alpha (Fragment) OS=Heliothis ... [more]
EF1A_HELVI9.520e-1482.22Elongation factor 1-alpha (Fragment) OS=Heliothis ... [more]
EF1A_HELGL9.520e-1482.22Elongation factor 1-alpha (Fragment) OS=Helicoverp... [more]
EF1A_HELDI9.520e-1482.22Elongation factor 1-alpha (Fragment) OS=Heliocheil... [more]
EF1A_HELAM9.520e-1482.22Elongation factor 1-alpha (Fragment) OS=Helicoverp... [more]
EF1A_HELAL9.520e-1482.22Elongation factor 1-alpha (Fragment) OS=Heliocheil... [more]
EF1A_CRYNE9.520e-1478.72Elongation factor 1-alpha OS=Cryptococcus neoforma... [more]
EF1A_BOMMO9.520e-1482.22Elongation factor 1-alpha OS=Bombyx mori PE=2 SV=1[more]
EF1A_ASHGO9.520e-1478.72Elongation factor 1-alpha OS=Ashbya gossypii GN=TE... [more]
EF1A_ANIIF9.520e-1482.22Elongation factor 1-alpha (Fragment) OS=Anicla inf... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_003D11_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_003_T7_D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884438 ID=CV884438; Name=CV884438; organism=Citrus sinensis; type=EST; length=161bp
TGGCGTCCATCTTGTTCAGCAGCAATCATCTGCTTCACACCACGGGTGAA
AGCAAGCAAAGCATGCTCACGAGTCTGACCATCCTTGGAGATACCAGCTT
CAAAACCACCGGTGGTGGAGTCAATGATGAGGACGGCACAGTCAGCCTGT
GAGGTACCCCT
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