CV884438

Overview
NameCV884438
Unique NameCV884438
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length161
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11121 contig Csv1_Contig11121:393..553. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884438 vs. ExPASy Swiss-Prot
Match: EF1A_ADIBE (Elongation factor 1-alpha (Fragment) OS=Adisura bella PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.520e-14
Identity = 37/45 (82.22%), Postives = 41/45 (91.11%), Query Frame = -1
Query:   24 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTRGVKQMI 158
            GTSQADCAVLI+ + TG FEAGISK+GQTREHALLAFT GVKQ+I
Sbjct:   91 GTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLI 135          
BLAST of CV884438 vs. ExPASy Swiss-Prot
Match: EF1A2_RHIRA (Elongation factor 1-alpha OS=Rhizomucor racemosus GN=TEF-2 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.520e-14
Identity = 37/47 (78.72%), Postives = 40/47 (85.11%), Query Frame = -1
Query:   18 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTRGVKQMIAA 158
            GTSQADCA+LII   TG FEAGISKDGQTREHALLAFT G +Q+I A
Sbjct:  105 GTSQADCAILIIAGGTGEFEAGISKDGQTREHALLAFTLGFRQLIVA 151          
BLAST of CV884438 vs. ExPASy Swiss-Prot
Match: EF1A2_DROME (Elongation factor 1-alpha 2 OS=Drosophila melanogaster GN=Ef1alpha100E PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 9.520e-14
Identity = 37/45 (82.22%), Postives = 41/45 (91.11%), Query Frame = -1
Query:   24 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTRGVKQMI 158
            GTSQADCAVLI+ + TG FEAGISK+GQTREHALLAFT GVKQ+I
Sbjct:  105 GTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLI 149          
BLAST of CV884438 vs. ExPASy Swiss-Prot
Match: EF1A1_RHIRA (Elongation factor 1-alpha OS=Rhizomucor racemosus GN=TEF-1 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.520e-14
Identity = 37/47 (78.72%), Postives = 40/47 (85.11%), Query Frame = -1
Query:   18 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTRGVKQMIAA 158
            GTSQADCA+LII   TG FEAGISKDGQTREHALLAFT G +Q+I A
Sbjct:  105 GTSQADCAILIIAGGTGEFEAGISKDGQTREHALLAFTLGFRQLIVA 151          
BLAST of CV884438 vs. ExPASy Swiss-Prot
Match: EF1A1_DROME (Elongation factor 1-alpha 1 OS=Drosophila melanogaster GN=Ef1alpha48D PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 9.520e-14
Identity = 37/45 (82.22%), Postives = 41/45 (91.11%), Query Frame = -1
Query:   24 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTRGVKQMI 158
            GTSQADCAVLI+ + TG FEAGISK+GQTREHALLAFT GVKQ+I
Sbjct:  105 GTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLI 149          
BLAST of CV884438 vs. ExPASy Swiss-Prot
Match: EF1A1_EUPCR (Elongation factor 1-alpha 1 OS=Euplotes crassus GN=EFA1 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.243e-13
Identity = 37/47 (78.72%), Postives = 41/47 (87.23%), Query Frame = -1
Query:   18 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTRGVKQMIAA 158
            GTSQAD A+LII S TG FEAGISK+GQTREHALLA+T GVKQM+ A
Sbjct:  105 GTSQADAAILIIASGTGEFEAGISKEGQTREHALLAYTMGVKQMVVA 151          
BLAST of CV884438 vs. ExPASy Swiss-Prot
Match: EF1A_TRYBB (Elongation factor 1-alpha OS=Trypanosoma brucei brucei GN=TEF1 PE=1 SV=3)

HSP 1 Score: 74.3294 bits (181), Expect = 2.121e-13
Identity = 37/45 (82.22%), Postives = 39/45 (86.67%), Query Frame = -1
Query:   24 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTRGVKQMI 158
            GTSQAD A+LII S  G FEAGISKDGQTREHALLAFT GVKQM+
Sbjct:  105 GTSQADAAILIIASAQGEFEAGISKDGQTREHALLAFTLGVKQMV 149          
BLAST of CV884438 vs. ExPASy Swiss-Prot
Match: EF1A_STYLE (Elongation factor 1-alpha OS=Stylonychia lemnae GN=EFAA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.121e-13
Identity = 38/47 (80.85%), Postives = 40/47 (85.11%), Query Frame = -1
Query:   18 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTRGVKQMIAA 158
            GTSQAD A+LII S  G FEAGISK+GQTREHALLAFT GVKQMI A
Sbjct:  105 GTSQADAAILIIASGQGEFEAGISKEGQTREHALLAFTMGVKQMIVA 151          
BLAST of CV884438 vs. ExPASy Swiss-Prot
Match: EF1A_ORYLA (Elongation factor 1-alpha OS=Oryzias latipes GN=eef1a PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.617e-13
Identity = 36/45 (80.00%), Postives = 40/45 (88.89%), Query Frame = -1
Query:   24 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTRGVKQMI 158
            GTSQADCAVLI+ +  G FEAGISK+GQTREHALLAFT GVKQ+I
Sbjct:  105 GTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLAFTLGVKQLI 149          
BLAST of CV884438 vs. ExPASy Swiss-Prot
Match: EF1A_ONCVO (Elongation factor 1-alpha OS=Onchocerca volvulus PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.617e-13
Identity = 37/47 (78.72%), Postives = 40/47 (85.11%), Query Frame = -1
Query:   18 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTRGVKQMIAA 158
            GTSQADCAVL++   TG FEAGISK+GQTREHALLA T GVKQMI A
Sbjct:  105 GTSQADCAVLVVACGTGEFEAGISKNGQTREHALLAQTLGVKQMIVA 151          
The following BLAST results are available for this feature:
BLAST of CV884438 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 95
Match NameE-valueIdentityDescription
EF1A_ADIBE9.520e-1482.22Elongation factor 1-alpha (Fragment) OS=Adisura be... [more]
EF1A2_RHIRA9.520e-1478.72Elongation factor 1-alpha OS=Rhizomucor racemosus ... [more]
EF1A2_DROME9.520e-1482.22Elongation factor 1-alpha 2 OS=Drosophila melanoga... [more]
EF1A1_RHIRA9.520e-1478.72Elongation factor 1-alpha OS=Rhizomucor racemosus ... [more]
EF1A1_DROME9.520e-1482.22Elongation factor 1-alpha 1 OS=Drosophila melanoga... [more]
EF1A1_EUPCR1.243e-1378.72Elongation factor 1-alpha 1 OS=Euplotes crassus GN... [more]
EF1A_TRYBB2.121e-1382.22Elongation factor 1-alpha OS=Trypanosoma brucei br... [more]
EF1A_STYLE2.121e-1380.85Elongation factor 1-alpha OS=Stylonychia lemnae GN... [more]
EF1A_ORYLA3.617e-1380.00Elongation factor 1-alpha OS=Oryzias latipes GN=ee... [more]
EF1A_ONCVO3.617e-1378.72Elongation factor 1-alpha OS=Onchocerca volvulus P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_003D11_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_003_T7_D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884438 ID=CV884438; Name=CV884438; organism=Citrus sinensis; type=EST; length=161bp
TGGCGTCCATCTTGTTCAGCAGCAATCATCTGCTTCACACCACGGGTGAA
AGCAAGCAAAGCATGCTCACGAGTCTGACCATCCTTGGAGATACCAGCTT
CAAAACCACCGGTGGTGGAGTCAATGATGAGGACGGCACAGTCAGCCTGT
GAGGTACCCCT
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