CV884437

Overview
NameCV884437
Unique NameCV884437
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length170
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11121 contig Csv1_Contig11121:396..565. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884437 vs. ExPASy Swiss-Prot
Match: EF1A_SOYBN (Elongation factor 1-alpha OS=Glycine max GN=TEFS1 PE=3 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 2.827e-26
Identity = 55/56 (98.21%), Postives = 56/56 (100.00%), Query Frame = 1
Query:    1 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTP 168
            GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALL+FTLGVKQMICCCNKMDATTP
Sbjct:  105 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLSFTLGVKQMICCCNKMDATTP 160          
BLAST of CV884437 vs. ExPASy Swiss-Prot
Match: EF1A2_HORVU (Elongation factor 1-alpha OS=Hordeum vulgare GN=BLT63 PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 4.822e-26
Identity = 55/56 (98.21%), Postives = 55/56 (98.21%), Query Frame = 1
Query:    1 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTP 168
            GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVK MICCCNKMDATTP
Sbjct:  105 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKHMICCCNKMDATTP 160          
BLAST of CV884437 vs. ExPASy Swiss-Prot
Match: EF1A1_DAUCA (Elongation factor 1-alpha OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 4.822e-26
Identity = 55/56 (98.21%), Postives = 55/56 (98.21%), Query Frame = 1
Query:    1 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTP 168
            GTSQADCAVLIID TTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTP
Sbjct:  105 GTSQADCAVLIIDPTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTP 160          
BLAST of CV884437 vs. ExPASy Swiss-Prot
Match: EF1A1_HORVU (Elongation factor 1-alpha OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.125e-25
Identity = 54/56 (96.43%), Postives = 55/56 (98.21%), Query Frame = 1
Query:    1 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTP 168
            GTSQADCAVLIIDSTTG F+AGISKDGQTREHALLAFTLGVKQMICCCNKMDATTP
Sbjct:  105 GTSQADCAVLIIDSTTGVFQAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTP 160          
BLAST of CV884437 vs. ExPASy Swiss-Prot
Match: EF1A_EUGGR (Elongation factor 1-alpha OS=Euglena gracilis GN=TEF PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.709e-19
Identity = 46/55 (83.64%), Postives = 48/55 (87.27%), Query Frame = 1
Query:    1 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATT 165
            GTSQAD AVL+IDSTTGGFEAGISKDGQTREHALLA+TLGVKQMI   NK D  T
Sbjct:  105 GTSQADAAVLVIDSTTGGFEAGISKDGQTREHALLAYTLGVKQMIVATNKFDDKT 159          
BLAST of CV884437 vs. ExPASy Swiss-Prot
Match: EF1A_TRYBB (Elongation factor 1-alpha OS=Trypanosoma brucei brucei GN=TEF1 PE=1 SV=3)

HSP 1 Score: 92.4337 bits (228), Expect = 7.456e-19
Identity = 45/55 (81.82%), Postives = 47/55 (85.45%), Query Frame = 1
Query:    1 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATT 165
            GTSQAD A+LII S  G FEAGISKDGQTREHALLAFTLGVKQM+ CCNKMD  T
Sbjct:  105 GTSQADAAILIIASAQGEFEAGISKDGQTREHALLAFTLGVKQMVVCCNKMDDKT 159          
BLAST of CV884437 vs. ExPASy Swiss-Prot
Match: EF1A_HYDAT (Elongation factor 1-alpha OS=Hydra attenuata PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.169e-18
Identity = 45/56 (80.36%), Postives = 49/56 (87.50%), Query Frame = 1
Query:    1 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTP 168
            GTSQADCAVLI+ S+TG FEAGISK+GQTREHALLAFTLGVKQMI   NK+D T P
Sbjct:  106 GTSQADCAVLIVASSTGEFEAGISKNGQTREHALLAFTLGVKQMIVAVNKIDNTEP 161          
BLAST of CV884437 vs. ExPASy Swiss-Prot
Match: EF1A_ONCVO (Elongation factor 1-alpha OS=Onchocerca volvulus PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.833e-18
Identity = 44/56 (78.57%), Postives = 48/56 (85.71%), Query Frame = 1
Query:    1 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTP 168
            GTSQADCAVL++   TG FEAGISK+GQTREHALLA TLGVKQMI  CNKMD+T P
Sbjct:  105 GTSQADCAVLVVACGTGEFEAGISKNGQTREHALLAQTLGVKQMIVACNKMDSTDP 160          
BLAST of CV884437 vs. ExPASy Swiss-Prot
Match: EF1A4_OSCTI (Elongation factor 1-alpha 4 OS=Oscheius tipulae GN=eft-4 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.833e-18
Identity = 44/56 (78.57%), Postives = 48/56 (85.71%), Query Frame = 1
Query:    1 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTP 168
            GTSQADCAVL++   TG FEAGISK+GQTREHALLA TLGVKQMI  CNKMD+T P
Sbjct:  105 GTSQADCAVLVVACGTGEFEAGISKNGQTREHALLAQTLGVKQMIVACNKMDSTEP 160          
BLAST of CV884437 vs. ExPASy Swiss-Prot
Match: EF1A3_OSCTI (Elongation factor 1-alpha 3 OS=Oscheius tipulae GN=eft-3 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.833e-18
Identity = 44/56 (78.57%), Postives = 48/56 (85.71%), Query Frame = 1
Query:    1 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTP 168
            GTSQADCAVL++   TG FEAGISK+GQTREHALLA TLGVKQMI  CNKMD+T P
Sbjct:  106 GTSQADCAVLVVACGTGEFEAGISKNGQTREHALLAQTLGVKQMIVACNKMDSTEP 161          
The following BLAST results are available for this feature:
BLAST of CV884437 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
EF1A_SOYBN2.827e-2698.21Elongation factor 1-alpha OS=Glycine max GN=TEFS1 ... [more]
EF1A2_HORVU4.822e-2698.21Elongation factor 1-alpha OS=Hordeum vulgare GN=BL... [more]
EF1A1_DAUCA4.822e-2698.21Elongation factor 1-alpha OS=Daucus carota PE=3 SV... [more]
EF1A1_HORVU3.125e-2596.43Elongation factor 1-alpha OS=Hordeum vulgare PE=1 ... [more]
EF1A_EUGGR5.709e-1983.64Elongation factor 1-alpha OS=Euglena gracilis GN=T... [more]
EF1A_TRYBB7.456e-1981.82Elongation factor 1-alpha OS=Trypanosoma brucei br... [more]
EF1A_HYDAT2.169e-1880.36Elongation factor 1-alpha OS=Hydra attenuata PE=2 ... [more]
EF1A_ONCVO2.833e-1878.57Elongation factor 1-alpha OS=Onchocerca volvulus P... [more]
EF1A4_OSCTI2.833e-1878.57Elongation factor 1-alpha 4 OS=Oscheius tipulae GN... [more]
EF1A3_OSCTI2.833e-1878.57Elongation factor 1-alpha 3 OS=Oscheius tipulae GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_003D11_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_003_T3_D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884437 ID=CV884437; Name=CV884437; organism=Citrus sinensis; type=EST; length=170bp
GGTACCTCACAGGCTGACTGTGCCGTCCTCATCATTGACTCCACCACCGG
TGGTTTTGAAGCTGGTATCTCCAAGGATGGTCAGACTCGTGAGCATGCTT
TGCTTGCTTTCACCCTTGGTGTGAAGCAGATGATTTGCTGCTGTAACAAG
ATGGACGCCACCACCCCATC
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