CV884437

Overview
NameCV884437
Unique NameCV884437
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length170
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11121 contig Csv1_Contig11121:396..565. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884437 vs. ExPASy Swiss-Prot
Match: EF1A_HYPBU (Elongation factor 1-alpha OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=tuf PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.779e-12
Identity = 32/56 (57.14%), Postives = 42/56 (75.00%), Query Frame = 1
Query:    1 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTP 168
            G SQAD A+L++ +  G FEAG+S +GQTREH +LA T+G+ Q+I   NKMDAT P
Sbjct:  105 GASQADAAILVVSARRGEFEAGMSAEGQTREHLILAKTMGIDQLIVAVNKMDATEP 160          
BLAST of CV884437 vs. ExPASy Swiss-Prot
Match: EF1A_SULTO (Elongation factor 1-alpha OS=Sulfolobus tokodaii GN=tuf PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.506e-11
Identity = 30/56 (53.57%), Postives = 41/56 (73.21%), Query Frame = 1
Query:    1 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTP 168
            G SQAD A+L++ +  G +EAG+S +GQTREH +LA T+G+ Q+I   NKMD T P
Sbjct:  104 GASQADAAILVVSAKKGEYEAGMSAEGQTREHIILAKTMGINQVIVAVNKMDLTDP 159          
BLAST of CV884437 vs. ExPASy Swiss-Prot
Match: EF1A_AERPE (Elongation factor 1-alpha OS=Aeropyrum pernix GN=tuf PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.506e-11
Identity = 31/53 (58.49%), Postives = 41/53 (77.36%), Query Frame = 1
Query:    1 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDA 159
            G SQAD A+L++ +  G FEAG+S +GQTREH LLA T+G++Q+I   NKMDA
Sbjct:  104 GASQADAAILVVSARKGEFEAGMSTEGQTREHLLLARTMGIEQIIVAVNKMDA 156          
BLAST of CV884437 vs. ExPASy Swiss-Prot
Match: EF1A2_EUPCR (Elongation factor 1-alpha 2 OS=Euplotes crassus GN=EFA2 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.506e-11
Identity = 32/52 (61.54%), Postives = 40/52 (76.92%), Query Frame = 1
Query:    1 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 156
            GTSQAD AVLII +  G FE G S++G T++HALLA+T+G+KQ I   NKMD
Sbjct:  106 GTSQADAAVLIIAAKKGEFEDGFSREGSTKDHALLAYTMGIKQAIVAINKMD 157          
BLAST of CV884437 vs. ExPASy Swiss-Prot
Match: EF1A_SULSO (Elongation factor 1-alpha OS=Sulfolobus solfataricus GN=tuf PE=1 SV=3)

HSP 1 Score: 67.0106 bits (162), Expect = 3.355e-11
Identity = 30/56 (53.57%), Postives = 41/56 (73.21%), Query Frame = 1
Query:    1 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTP 168
            G SQAD A+L++ +  G +EAG+S +GQTREH +LA T+G+ Q+I   NKMD T P
Sbjct:  104 GASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEP 159          
BLAST of CV884437 vs. ExPASy Swiss-Prot
Match: EF1A_CRYPV (Elongation factor 1-alpha OS=Cryptosporidium parvum PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.473e-11
Identity = 34/52 (65.38%), Postives = 40/52 (76.92%), Query Frame = 1
Query:    1 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 156
            GTSQAD A+L++ +    FE   SK+GQTREHALLAFTLGV+QMI   NKMD
Sbjct:  105 GTSQADVALLVVPADR--FEGAFSKEGQTREHALLAFTLGVRQMIVGINKMD 154          
BLAST of CV884437 vs. ExPASy Swiss-Prot
Match: ERF3B_PONAB (Eukaryotic peptide chain release factor GTP-binding subunit ERF3B OS=Pongo abelii GN=GSPT2 PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.761e-11
Identity = 33/55 (60.00%), Postives = 37/55 (67.27%), Query Frame = 1
Query:    1 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATT 165
            G SQAD AVL+I +  G FE G  K GQTREHA+LA T GVK +I   NKMD  T
Sbjct:  301 GASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPT 355          
BLAST of CV884437 vs. ExPASy Swiss-Prot
Match: ERF3B_HUMAN (Eukaryotic peptide chain release factor GTP-binding subunit ERF3B OS=Homo sapiens GN=GSPT2 PE=1 SV=2)

HSP 1 Score: 65.4698 bits (158), Expect = 9.761e-11
Identity = 33/55 (60.00%), Postives = 37/55 (67.27%), Query Frame = 1
Query:    1 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATT 165
            G SQAD AVL+I +  G FE G  K GQTREHA+LA T GVK +I   NKMD  T
Sbjct:  301 GASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPT 355          
BLAST of CV884437 vs. ExPASy Swiss-Prot
Match: ERF3A_MOUSE (Eukaryotic peptide chain release factor GTP-binding subunit ERF3A OS=Mus musculus GN=Gspt1 PE=1 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.761e-11
Identity = 33/55 (60.00%), Postives = 37/55 (67.27%), Query Frame = 1
Query:    1 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATT 165
            G SQAD AVL+I +  G FE G  K GQTREHA+LA T GVK +I   NKMD  T
Sbjct:  172 GASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPT 226          
BLAST of CV884437 vs. ExPASy Swiss-Prot
Match: ERF3A_HUMAN (Eukaryotic peptide chain release factor GTP-binding subunit ERF3A OS=Homo sapiens GN=GSPT1 PE=1 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.761e-11
Identity = 33/55 (60.00%), Postives = 37/55 (67.27%), Query Frame = 1
Query:    1 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATT 165
            G SQAD AVL+I +  G FE G  K GQTREHA+LA T GVK +I   NKMD  T
Sbjct:  172 GASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPT 226          
The following BLAST results are available for this feature:
BLAST of CV884437 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
EF1A_HYPBU1.779e-1257.14Elongation factor 1-alpha OS=Hyperthermus butylicu... [more]
EF1A_SULTO1.506e-1153.57Elongation factor 1-alpha OS=Sulfolobus tokodaii G... [more]
EF1A_AERPE1.506e-1158.49Elongation factor 1-alpha OS=Aeropyrum pernix GN=t... [more]
EF1A2_EUPCR1.506e-1161.54Elongation factor 1-alpha 2 OS=Euplotes crassus GN... [more]
EF1A_SULSO3.355e-1153.57Elongation factor 1-alpha OS=Sulfolobus solfataric... [more]
EF1A_CRYPV7.473e-1165.38Elongation factor 1-alpha OS=Cryptosporidium parvu... [more]
ERF3B_PONAB9.761e-1160.00Eukaryotic peptide chain release factor GTP-bindin... [more]
ERF3B_HUMAN9.761e-1160.00Eukaryotic peptide chain release factor GTP-bindin... [more]
ERF3A_MOUSE9.761e-1160.00Eukaryotic peptide chain release factor GTP-bindin... [more]
ERF3A_HUMAN9.761e-1160.00Eukaryotic peptide chain release factor GTP-bindin... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_003D11_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_003_T3_D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884437 ID=CV884437; Name=CV884437; organism=Citrus sinensis; type=EST; length=170bp
GGTACCTCACAGGCTGACTGTGCCGTCCTCATCATTGACTCCACCACCGG
TGGTTTTGAAGCTGGTATCTCCAAGGATGGTCAGACTCGTGAGCATGCTT
TGCTTGCTTTCACCCTTGGTGTGAAGCAGATGATTTGCTGCTGTAACAAG
ATGGACGCCACCACCCCATC
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