CV884437

Overview
NameCV884437
Unique NameCV884437
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length170
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884437 vs. ExPASy Swiss-Prot
Match: EF1A2_OSCTI (Elongation factor 1-alpha 2 OS=Oscheius tipulae GN=eft-2 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.833e-18
Identity = 44/56 (78.57%), Postives = 48/56 (85.71%), Query Frame = 1
Query:    1 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTP 168
            GTSQADCAVL++   TG FEAGISK+GQTREHALLA TLGVKQMI  CNKMD+T P
Sbjct:  105 GTSQADCAVLVVACGTGEFEAGISKNGQTREHALLAQTLGVKQMIVACNKMDSTEP 160          
BLAST of CV884437 vs. ExPASy Swiss-Prot
Match: EF1A1_OSCTI (Elongation factor 1-alpha 1 OS=Oscheius tipulae GN=eft-1 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.833e-18
Identity = 44/56 (78.57%), Postives = 48/56 (85.71%), Query Frame = 1
Query:    1 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTP 168
            GTSQADCAVL++   TG FEAGISK+GQTREHALLA TLGVKQMI  CNKMD+T P
Sbjct:  105 GTSQADCAVLVVACGTGEFEAGISKNGQTREHALLAQTLGVKQMIVACNKMDSTEP 160          
BLAST of CV884437 vs. ExPASy Swiss-Prot
Match: EF1A_COCIM (Elongation factor 1-alpha OS=Coccidioides immitis GN=TEF PE=2 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 4.833e-18
Identity = 44/54 (81.48%), Postives = 48/54 (88.89%), Query Frame = 1
Query:    1 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDAT 162
            GTSQADCA+LII + TG FEAGISKDGQTREHALLAFTLGVKQ+I   NKMD+T
Sbjct:  106 GTSQADCAILIIAAGTGEFEAGISKDGQTREHALLAFTLGVKQLIVAINKMDST 159          
BLAST of CV884437 vs. ExPASy Swiss-Prot
Match: EF1A_CAEEL (Elongation factor 1-alpha OS=Caenorhabditis elegans GN=eft-3 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.312e-18
Identity = 43/56 (76.79%), Postives = 48/56 (85.71%), Query Frame = 1
Query:    1 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTP 168
            GTSQADCAVL++   TG FEAGISK+GQTREHALLA TLGVKQ+I  CNKMD+T P
Sbjct:  105 GTSQADCAVLVVACGTGEFEAGISKNGQTREHALLAQTLGVKQLIVACNKMDSTEP 160          
BLAST of CV884437 vs. ExPASy Swiss-Prot
Match: EF1A_SPOFR (Elongation factor 1-alpha (Fragment) OS=Spodoptera frugiperda PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.244e-18
Identity = 44/56 (78.57%), Postives = 49/56 (87.50%), Query Frame = 1
Query:    1 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTP 168
            GTSQADCAVLI+ + TG FEAGISK+GQTREHALLAFTLGVKQ+I   NKMD+T P
Sbjct:   91 GTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEP 146          
BLAST of CV884437 vs. ExPASy Swiss-Prot
Match: EF1A_RHYAM (Elongation factor 1-alpha (Fragment) OS=Rhynchosciara americana PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.244e-18
Identity = 44/56 (78.57%), Postives = 49/56 (87.50%), Query Frame = 1
Query:    1 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTP 168
            GTSQADCAVLI+ + TG FEAGISK+GQTREHALLAFTLGVKQ+I   NKMD+T P
Sbjct:   54 GTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEP 109          
BLAST of CV884437 vs. ExPASy Swiss-Prot
Match: EF1A_HELZE (Elongation factor 1-alpha (Fragment) OS=Heliothis zea PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.244e-18
Identity = 44/56 (78.57%), Postives = 49/56 (87.50%), Query Frame = 1
Query:    1 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTP 168
            GTSQADCAVLI+ + TG FEAGISK+GQTREHALLAFTLGVKQ+I   NKMD+T P
Sbjct:   91 GTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEP 146          
BLAST of CV884437 vs. ExPASy Swiss-Prot
Match: EF1A_HELVI (Elongation factor 1-alpha (Fragment) OS=Heliothis virescens PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.244e-18
Identity = 44/56 (78.57%), Postives = 49/56 (87.50%), Query Frame = 1
Query:    1 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTP 168
            GTSQADCAVLI+ + TG FEAGISK+GQTREHALLAFTLGVKQ+I   NKMD+T P
Sbjct:   91 GTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEP 146          
BLAST of CV884437 vs. ExPASy Swiss-Prot
Match: EF1A_HELGL (Elongation factor 1-alpha (Fragment) OS=Helicoverpa gelotopoeon PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.244e-18
Identity = 44/56 (78.57%), Postives = 49/56 (87.50%), Query Frame = 1
Query:    1 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTP 168
            GTSQADCAVLI+ + TG FEAGISK+GQTREHALLAFTLGVKQ+I   NKMD+T P
Sbjct:   91 GTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEP 146          
BLAST of CV884437 vs. ExPASy Swiss-Prot
Match: EF1A_HELDI (Elongation factor 1-alpha (Fragment) OS=Heliocheilus discalis PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.244e-18
Identity = 44/56 (78.57%), Postives = 49/56 (87.50%), Query Frame = 1
Query:    1 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTP 168
            GTSQADCAVLI+ + TG FEAGISK+GQTREHALLAFTLGVKQ+I   NKMD+T P
Sbjct:   91 GTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEP 146          
The following BLAST results are available for this feature:
BLAST of CV884437 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
EF1A2_OSCTI2.833e-1878.57Elongation factor 1-alpha 2 OS=Oscheius tipulae GN... [more]
EF1A1_OSCTI2.833e-1878.57Elongation factor 1-alpha 1 OS=Oscheius tipulae GN... [more]
EF1A_COCIM4.833e-1881.48Elongation factor 1-alpha OS=Coccidioides immitis ... [more]
EF1A_CAEEL6.312e-1876.79Elongation factor 1-alpha OS=Caenorhabditis elegan... [more]
EF1A_SPOFR8.244e-1878.57Elongation factor 1-alpha (Fragment) OS=Spodoptera... [more]
EF1A_RHYAM8.244e-1878.57Elongation factor 1-alpha (Fragment) OS=Rhynchosci... [more]
EF1A_HELZE8.244e-1878.57Elongation factor 1-alpha (Fragment) OS=Heliothis ... [more]
EF1A_HELVI8.244e-1878.57Elongation factor 1-alpha (Fragment) OS=Heliothis ... [more]
EF1A_HELGL8.244e-1878.57Elongation factor 1-alpha (Fragment) OS=Helicoverp... [more]
EF1A_HELDI8.244e-1878.57Elongation factor 1-alpha (Fragment) OS=Heliocheil... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_003D11_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_003_T3_D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884437 ID=CV884437; Name=CV884437; organism=Citrus sinensis; type=EST; length=170bp
GGTACCTCACAGGCTGACTGTGCCGTCCTCATCATTGACTCCACCACCGG
TGGTTTTGAAGCTGGTATCTCCAAGGATGGTCAGACTCGTGAGCATGCTT
TGCTTGCTTTCACCCTTGGTGTGAAGCAGATGATTTGCTGCTGTAACAAG
ATGGACGCCACCACCCCATC
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