CV884437

Overview
NameCV884437
Unique NameCV884437
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length170
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11121 contig Csv1_Contig11121:396..565. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884437 vs. ExPASy Swiss-Prot
Match: EF1A_PODAN (Elongation factor 1-alpha OS=Podospora anserina GN=TEF PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.406e-17
Identity = 43/54 (79.63%), Postives = 47/54 (87.04%), Query Frame = 1
Query:    1 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDAT 162
            GTSQADCA+LII + TG FEAGISKDGQTREHALLA+TLGVKQ+I   NKMD T
Sbjct:  106 GTSQADCAILIIAAGTGEFEAGISKDGQTREHALLAYTLGVKQLIVAINKMDTT 159          
BLAST of CV884437 vs. ExPASy Swiss-Prot
Match: EF1A_NEUCR (Elongation factor 1-alpha OS=Neurospora crassa GN=tef-1 PE=3 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 1.406e-17
Identity = 43/54 (79.63%), Postives = 47/54 (87.04%), Query Frame = 1
Query:    1 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDAT 162
            GTSQADCA+LII + TG FEAGISKDGQTREHALLA+TLGVKQ+I   NKMD T
Sbjct:  106 GTSQADCAILIIAAGTGEFEAGISKDGQTREHALLAYTLGVKQLIVAINKMDTT 159          
BLAST of CV884437 vs. ExPASy Swiss-Prot
Match: EF1A_AURPU (Elongation factor 1-alpha OS=Aureobasidium pullulans GN=TEF1 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.406e-17
Identity = 43/54 (79.63%), Postives = 47/54 (87.04%), Query Frame = 1
Query:    1 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDAT 162
            GTSQADCA+LII + TG FEAGISKDGQTREHALLA+TLGVKQ+I   NKMD T
Sbjct:  105 GTSQADCAILIIAAGTGEFEAGISKDGQTREHALLAYTLGVKQLIVAINKMDTT 158          
BLAST of CV884437 vs. ExPASy Swiss-Prot
Match: EF1A_AJECG (Elongation factor 1-alpha OS=Ajellomyces capsulata (strain ATCC 26029 / G186AR / H82 / RMSCC 2432) GN=TEF PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.406e-17
Identity = 43/54 (79.63%), Postives = 47/54 (87.04%), Query Frame = 1
Query:    1 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDAT 162
            GTSQADCA+LII + TG FEAGISKDGQTREHALLAFTLGV+Q+I   NKMD T
Sbjct:  106 GTSQADCAILIIAAGTGEFEAGISKDGQTREHALLAFTLGVRQLIVAINKMDTT 159          
BLAST of CV884437 vs. ExPASy Swiss-Prot
Match: EF1A2_SCHPO (Elongation factor 1-alpha-B/C OS=Schizosaccharomyces pombe GN=tef1b PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.406e-17
Identity = 43/54 (79.63%), Postives = 46/54 (85.19%), Query Frame = 1
Query:    1 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDAT 162
            GTSQADCA+LII   TG FEAGISKDGQTREHALLA+TLGVKQ+I   NKMD T
Sbjct:  105 GTSQADCAILIIGGGTGEFEAGISKDGQTREHALLAYTLGVKQLIVAVNKMDTT 158          
BLAST of CV884437 vs. ExPASy Swiss-Prot
Match: EF1A_PIRIN (Elongation factor 1-alpha OS=Piriformospora indica GN=TEF1 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.837e-17
Identity = 43/54 (79.63%), Postives = 46/54 (85.19%), Query Frame = 1
Query:    1 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDAT 162
            GTSQADCA+LII   TG FEAGISKDGQTREHALLAFTLGV+Q+I   NKMD T
Sbjct:  105 GTSQADCAILIIAGGTGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDTT 158          
BLAST of CV884437 vs. ExPASy Swiss-Prot
Match: EF1A_CRYNE (Elongation factor 1-alpha OS=Cryptococcus neoformans GN=TEF1 PE=2 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 1.837e-17
Identity = 42/52 (80.77%), Postives = 46/52 (88.46%), Query Frame = 1
Query:    1 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 156
            GTSQADCA+LII +  G FEAGISKDGQTREHALLAFTLGV+Q+I  CNKMD
Sbjct:  105 GTSQADCAILIIATGIGEFEAGISKDGQTREHALLAFTLGVRQLIVACNKMD 156          
BLAST of CV884437 vs. ExPASy Swiss-Prot
Match: EF1A3_RHIRA (Elongation factor 1-alpha OS=Rhizomucor racemosus GN=TEF-3 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.837e-17
Identity = 43/54 (79.63%), Postives = 46/54 (85.19%), Query Frame = 1
Query:    1 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDAT 162
            GTSQADCA+LII   TG FEAGISKDGQTREHALLAFTLGV+Q+I   NKMD T
Sbjct:  105 GTSQADCAILIIAGGTGEFEAGISKDGQTREHALLAFTLGVRQLIVAINKMDTT 158          
BLAST of CV884437 vs. ExPASy Swiss-Prot
Match: EF1A_TETPY (Elongation factor 1-alpha OS=Tetrahymena pyriformis PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.399e-17
Identity = 44/55 (80.00%), Postives = 46/55 (83.64%), Query Frame = 1
Query:    1 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATT 165
            GTSQAD A+L+I S  G FEAGISKDGQTREHALLAFTLGVKQMI C NKMD  T
Sbjct:  106 GTSQADVAILMIASPQGEFEAGISKDGQTREHALLAFTLGVKQMIVCLNKMDEKT 160          
BLAST of CV884437 vs. ExPASy Swiss-Prot
Match: EF1A_ASPOR (Elongation factor 1-alpha OS=Aspergillus oryzae GN=tef1 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.399e-17
Identity = 43/52 (82.69%), Postives = 46/52 (88.46%), Query Frame = 1
Query:    1 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 156
            GTSQADCA+LII S TG FEAGISKDGQTREHALLAFTLGV+Q+I   NKMD
Sbjct:  106 GTSQADCAILIIASGTGEFEAGISKDGQTREHALLAFTLGVRQLIVALNKMD 157          
The following BLAST results are available for this feature:
BLAST of CV884437 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
EF1A_PODAN1.406e-1779.63Elongation factor 1-alpha OS=Podospora anserina GN... [more]
EF1A_NEUCR1.406e-1779.63Elongation factor 1-alpha OS=Neurospora crassa GN=... [more]
EF1A_AURPU1.406e-1779.63Elongation factor 1-alpha OS=Aureobasidium pullula... [more]
EF1A_AJECG1.406e-1779.63Elongation factor 1-alpha OS=Ajellomyces capsulata... [more]
EF1A2_SCHPO1.406e-1779.63Elongation factor 1-alpha-B/C OS=Schizosaccharomyc... [more]
EF1A_PIRIN1.837e-1779.63Elongation factor 1-alpha OS=Piriformospora indica... [more]
EF1A_CRYNE1.837e-1780.77Elongation factor 1-alpha OS=Cryptococcus neoforma... [more]
EF1A3_RHIRA1.837e-1779.63Elongation factor 1-alpha OS=Rhizomucor racemosus ... [more]
EF1A_TETPY2.399e-1780.00Elongation factor 1-alpha OS=Tetrahymena pyriformi... [more]
EF1A_ASPOR2.399e-1782.69Elongation factor 1-alpha OS=Aspergillus oryzae GN... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_2_003D11_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_003_T3_D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884437 ID=CV884437; Name=CV884437; organism=Citrus sinensis; type=EST; length=170bp
GGTACCTCACAGGCTGACTGTGCCGTCCTCATCATTGACTCCACCACCGG
TGGTTTTGAAGCTGGTATCTCCAAGGATGGTCAGACTCGTGAGCATGCTT
TGCTTGCTTTCACCCTTGGTGTGAAGCAGATGATTTGCTGCTGTAACAAG
ATGGACGCCACCACCCCATC
back to top