CV884437

Overview
NameCV884437
Unique NameCV884437
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length170
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11121 contig Csv1_Contig11121:396..565. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884437 vs. ExPASy Swiss-Prot
Match: EF1A1_DROME (Elongation factor 1-alpha 1 OS=Drosophila melanogaster GN=Ef1alpha48D PE=1 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 2.399e-17
Identity = 43/56 (76.79%), Postives = 49/56 (87.50%), Query Frame = 1
Query:    1 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTP 168
            GTSQADCAVLI+ + TG FEAGISK+GQTREHALLAFTLGVKQ+I   NKMD++ P
Sbjct:  105 GTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSSEP 160          
BLAST of CV884437 vs. ExPASy Swiss-Prot
Match: EF1A_ORYLA (Elongation factor 1-alpha OS=Oryzias latipes GN=eef1a PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.133e-17
Identity = 43/56 (76.79%), Postives = 48/56 (85.71%), Query Frame = 1
Query:    1 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTP 168
            GTSQADCAVLI+ +  G FEAGISK+GQTREHALLAFTLGVKQ+I   NKMD+T P
Sbjct:  105 GTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEP 160          
BLAST of CV884437 vs. ExPASy Swiss-Prot
Match: EF1A_ABSGL (Elongation factor 1-alpha OS=Absidia glauca GN=TEF-1 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.133e-17
Identity = 42/54 (77.78%), Postives = 47/54 (87.04%), Query Frame = 1
Query:    1 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDAT 162
            GTSQADC +LII + TG FEAGISKDGQTREHALLAFTLGV+Q+I   NKMD+T
Sbjct:  105 GTSQADCGILIIAAGTGEFEAGISKDGQTREHALLAFTLGVRQLIVAINKMDST 158          
BLAST of CV884437 vs. ExPASy Swiss-Prot
Match: EF1A1_EUPCR (Elongation factor 1-alpha 1 OS=Euplotes crassus GN=EFA1 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.133e-17
Identity = 42/56 (75.00%), Postives = 48/56 (85.71%), Query Frame = 1
Query:    1 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTP 168
            GTSQAD A+LII S TG FEAGISK+GQTREHALLA+T+GVKQM+   NKMD+T P
Sbjct:  105 GTSQADAAILIIASGTGEFEAGISKEGQTREHALLAYTMGVKQMVVAMNKMDSTEP 160          
BLAST of CV884437 vs. ExPASy Swiss-Prot
Match: EF1A_DANRE (Elongation factor 1-alpha OS=Danio rerio GN=eef1a PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.091e-17
Identity = 43/56 (76.79%), Postives = 47/56 (83.93%), Query Frame = 1
Query:    1 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTP 168
            GTSQADCAVLI+    G FEAGISK+GQTREHALLAFTLGVKQ+I   NKMD+T P
Sbjct:  105 GTSQADCAVLIVAGGVGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEP 160          
BLAST of CV884437 vs. ExPASy Swiss-Prot
Match: EF1A3_XENLA (Elongation factor 1-alpha, oocyte form OS=Xenopus laevis PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 4.091e-17
Identity = 43/56 (76.79%), Postives = 47/56 (83.93%), Query Frame = 1
Query:    1 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTP 168
            GTSQADCAVLI+    G FEAGISK+GQTREHALLAFTLGVKQ+I   NKMD+T P
Sbjct:  105 GTSQADCAVLIVAGGVGEFEAGISKNGQTREHALLAFTLGVKQLIIGVNKMDSTEP 160          
BLAST of CV884437 vs. ExPASy Swiss-Prot
Match: EF1A2_XENLA (Elongation factor 1-alpha, oocyte form OS=Xenopus laevis GN=eef1ao PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.091e-17
Identity = 43/56 (76.79%), Postives = 47/56 (83.93%), Query Frame = 1
Query:    1 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTP 168
            GTSQADCAVLI+    G FEAGISK+GQTREHALLAFTLGVKQ+I   NKMD+T P
Sbjct:  105 GTSQADCAVLIVAGGVGEFEAGISKNGQTREHALLAFTLGVKQLIIGVNKMDSTEP 160          
BLAST of CV884437 vs. ExPASy Swiss-Prot
Match: EF1A_TRIRE (Elongation factor 1-alpha OS=Trichoderma reesei GN=tef1 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.343e-17
Identity = 42/52 (80.77%), Postives = 46/52 (88.46%), Query Frame = 1
Query:    1 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 156
            GTSQADCA+LII + TG FEAGISKDGQTREHALLA+TLGVKQ+I   NKMD
Sbjct:  106 GTSQADCAILIIAAGTGEFEAGISKDGQTREHALLAYTLGVKQLIVAINKMD 157          
BLAST of CV884437 vs. ExPASy Swiss-Prot
Match: EF1A_CANAL (Elongation factor 1-alpha OS=Candida albicans GN=TEF1 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.343e-17
Identity = 42/53 (79.25%), Postives = 46/53 (86.79%), Query Frame = 1
Query:    1 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDA 159
            GTSQADCA+LII   TG FEAGISKDGQTREHALLA+TLGVKQ+I   NKMD+
Sbjct:  105 GTSQADCAILIIAGGTGEFEAGISKDGQTREHALLAYTLGVKQLIVAVNKMDS 157          
BLAST of CV884437 vs. ExPASy Swiss-Prot
Match: EF1A_ARXAD (Elongation factor 1-alpha OS=Arxula adeninivorans GN=TEF PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.343e-17
Identity = 42/53 (79.25%), Postives = 46/53 (86.79%), Query Frame = 1
Query:    1 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDA 159
            GTSQADCA+LII   TG FEAGISKDGQTREHALLAFTLGV+Q+I   NKMD+
Sbjct:  105 GTSQADCAILIIAGGTGEFEAGISKDGQTREHALLAFTLGVRQLIVAINKMDS 157          
The following BLAST results are available for this feature:
BLAST of CV884437 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
EF1A1_DROME2.399e-1776.79Elongation factor 1-alpha 1 OS=Drosophila melanoga... [more]
EF1A_ORYLA3.133e-1776.79Elongation factor 1-alpha OS=Oryzias latipes GN=ee... [more]
EF1A_ABSGL3.133e-1777.78Elongation factor 1-alpha OS=Absidia glauca GN=TEF... [more]
EF1A1_EUPCR3.133e-1775.00Elongation factor 1-alpha 1 OS=Euplotes crassus GN... [more]
EF1A_DANRE4.091e-1776.79Elongation factor 1-alpha OS=Danio rerio GN=eef1a ... [more]
EF1A3_XENLA4.091e-1776.79Elongation factor 1-alpha, oocyte form OS=Xenopus ... [more]
EF1A2_XENLA4.091e-1776.79Elongation factor 1-alpha, oocyte form OS=Xenopus ... [more]
EF1A_TRIRE5.343e-1780.77Elongation factor 1-alpha OS=Trichoderma reesei GN... [more]
EF1A_CANAL5.343e-1779.25Elongation factor 1-alpha OS=Candida albicans GN=T... [more]
EF1A_ARXAD5.343e-1779.25Elongation factor 1-alpha OS=Arxula adeninivorans ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_003D11_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_003_T3_D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884437 ID=CV884437; Name=CV884437; organism=Citrus sinensis; type=EST; length=170bp
GGTACCTCACAGGCTGACTGTGCCGTCCTCATCATTGACTCCACCACCGG
TGGTTTTGAAGCTGGTATCTCCAAGGATGGTCAGACTCGTGAGCATGCTT
TGCTTGCTTTCACCCTTGGTGTGAAGCAGATGATTTGCTGCTGTAACAAG
ATGGACGCCACCACCCCATC
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