CV884437

Overview
NameCV884437
Unique NameCV884437
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length170
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11121 contig Csv1_Contig11121:396..565. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CV884437 vs. ExPASy Swiss-Prot
Match: EF1A2_HUMAN (Elongation factor 1-alpha 2 OS=Homo sapiens GN=EEF1A2 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 6.979e-17
Identity = 42/56 (75.00%), Postives = 48/56 (85.71%), Query Frame = 1 
Query:    1 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTP 168
            GTSQADCAVLI+ +  G FEAGISK+GQTREHALLA+TLGVKQ+I   NKMD+T P
Sbjct:  105 GTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEP 160
[Close]
BLAST of CV884437 vs. ExPASy Swiss-Prot
Match: EF1A2_BOVIN (Elongation factor 1-alpha 2 OS=Bos taurus GN=EEF1A2 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 6.979e-17
Identity = 42/56 (75.00%), Postives = 48/56 (85.71%), Query Frame = 1 
Query:    1 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTP 168
            GTSQADCAVLI+ +  G FEAGISK+GQTREHALLA+TLGVKQ+I   NKMD+T P
Sbjct:  105 GTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEP 160
[Close]
BLAST of CV884437 vs. ExPASy Swiss-Prot
Match: EF1A1_RHIRA (Elongation factor 1-alpha OS=Rhizomucor racemosus GN=TEF-1 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 6.979e-17
Identity = 42/54 (77.78%), Postives = 45/54 (83.33%), Query Frame = 1 
Query:    1 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDAT 162
            GTSQADCA+LII   TG FEAGISKDGQTREHALLAFTLG +Q+I   NKMD T
Sbjct:  105 GTSQADCAILIIAGGTGEFEAGISKDGQTREHALLAFTLGFRQLIVAINKMDTT 158
[Close]
BLAST of CV884437 vs. ExPASy Swiss-Prot
Match: EF1A1_RAT (Elongation factor 1-alpha 1 OS=Rattus norvegicus GN=Eef1a1 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 6.979e-17
Identity = 42/56 (75.00%), Postives = 48/56 (85.71%), Query Frame = 1 
Query:    1 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTP 168
            GTSQADCAVLI+ +  G FEAGISK+GQTREHALLA+TLGVKQ+I   NKMD+T P
Sbjct:  105 GTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEP 160
[Close]
BLAST of CV884437 vs. ExPASy Swiss-Prot
Match: EF1A1_RABIT (Elongation factor 1-alpha 1 OS=Oryctolagus cuniculus GN=EEF1A1 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 6.979e-17
Identity = 42/56 (75.00%), Postives = 48/56 (85.71%), Query Frame = 1 
Query:    1 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTP 168
            GTSQADCAVLI+ +  G FEAGISK+GQTREHALLA+TLGVKQ+I   NKMD+T P
Sbjct:  105 GTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEP 160
[Close]
BLAST of CV884437 vs. ExPASy Swiss-Prot
Match: EF1A1_PONAB (Elongation factor 1-alpha 1 OS=Pongo abelii GN=EEF1A1 PE=2 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 6.979e-17
Identity = 42/56 (75.00%), Postives = 48/56 (85.71%), Query Frame = 1 
Query:    1 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTP 168
            GTSQADCAVLI+ +  G FEAGISK+GQTREHALLA+TLGVKQ+I   NKMD+T P
Sbjct:  105 GTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEP 160
[Close]
BLAST of CV884437 vs. ExPASy Swiss-Prot
Match: EF1A1_PANTR (Elongation factor 1-alpha 1 OS=Pan troglodytes GN=EEF1A1 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 6.979e-17
Identity = 42/56 (75.00%), Postives = 48/56 (85.71%), Query Frame = 1 
Query:    1 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTP 168
            GTSQADCAVLI+ +  G FEAGISK+GQTREHALLA+TLGVKQ+I   NKMD+T P
Sbjct:  105 GTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEP 160
[Close]
BLAST of CV884437 vs. ExPASy Swiss-Prot
Match: EF1A1_MOUSE (Elongation factor 1-alpha 1 OS=Mus musculus GN=Eef1a1 PE=1 SV=3)

HSP 1 Score: 85.8853 bits (211), Expect = 6.979e-17
Identity = 42/56 (75.00%), Postives = 48/56 (85.71%), Query Frame = 1 
Query:    1 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTP 168
            GTSQADCAVLI+ +  G FEAGISK+GQTREHALLA+TLGVKQ+I   NKMD+T P
Sbjct:  105 GTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEP 160
[Close]
BLAST of CV884437 vs. ExPASy Swiss-Prot
Match: EF1A1_HUMAN (Elongation factor 1-alpha 1 OS=Homo sapiens GN=EEF1A1 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 6.979e-17
Identity = 42/56 (75.00%), Postives = 48/56 (85.71%), Query Frame = 1 
Query:    1 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTP 168
            GTSQADCAVLI+ +  G FEAGISK+GQTREHALLA+TLGVKQ+I   NKMD+T P
Sbjct:  105 GTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEP 160
[Close]
BLAST of CV884437 vs. ExPASy Swiss-Prot
Match: EF1A1_HORSE (Elongation factor 1-alpha 1 OS=Equus caballus GN=EEF1A1 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 6.979e-17
Identity = 42/56 (75.00%), Postives = 48/56 (85.71%), Query Frame = 1 
Query:    1 GTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTP 168
            GTSQADCAVLI+ +  G FEAGISK+GQTREHALLA+TLGVKQ+I   NKMD+T P
Sbjct:  105 GTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEP 160
The following BLAST results are available for this feature:
BLAST of CV884437 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
EF1A2_HUMAN6.979e-1775.00Elongation factor 1-alpha 2 OS=Homo sapiens GN=EEF... [more]
EF1A2_BOVIN6.979e-1775.00Elongation factor 1-alpha 2 OS=Bos taurus GN=EEF1A... [more]
EF1A1_RHIRA6.979e-1777.78Elongation factor 1-alpha OS=Rhizomucor racemosus ... [more]
EF1A1_RAT6.979e-1775.00Elongation factor 1-alpha 1 OS=Rattus norvegicus G... [more]
EF1A1_RABIT6.979e-1775.00Elongation factor 1-alpha 1 OS=Oryctolagus cunicul... [more]
EF1A1_PONAB6.979e-1775.00Elongation factor 1-alpha 1 OS=Pongo abelii GN=EEF... [more]
EF1A1_PANTR6.979e-1775.00Elongation factor 1-alpha 1 OS=Pan troglodytes GN=... [more]
EF1A1_MOUSE6.979e-1775.00Elongation factor 1-alpha 1 OS=Mus musculus GN=Eef... [more]
EF1A1_HUMAN6.979e-1775.00Elongation factor 1-alpha 1 OS=Homo sapiens GN=EEF... [more]
EF1A1_HORSE6.979e-1775.00Elongation factor 1-alpha 1 OS=Equus caballus GN=E... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_003D11_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_003_T3_D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884437 ID=CV884437; Name=CV884437; organism=Citrus sinensis; type=EST; length=170bp
GGTACCTCACAGGCTGACTGTGCCGTCCTCATCATTGACTCCACCACCGG
TGGTTTTGAAGCTGGTATCTCCAAGGATGGTCAGACTCGTGAGCATGCTT
TGCTTGCTTTCACCCTTGGTGTGAAGCAGATGATTTGCTGCTGTAACAAG
ATGGACGCCACCACCCCATC
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