EY665274

Overview
NameEY665274
Unique NameEY665274
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1084
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665274 vs. ExPASy Swiss-Prot
Match: MDHM_FRAAN (Malate dehydrogenase, mitochondrial OS=Fragaria ananassa GN=MMDHI PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.040e-37
Identity = 51/81 (62.96%), Postives = 64/81 (79.01%), Query Frame = 1
Query:  220 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGVDLVIIPARRSEEP 462
            KVA+LGAAGGIGQPLA+LMK+NPLVS L LYD+  TPGV AD+SH++T + V+G+ G+ QL  AL G D+VIIPA    +P
Sbjct:   28 KVAVLGAAGGIGQPLALLMKLNPLVSQLSLYDIAGTPGVAADVSHINTRSEVKGYAGEEQLGEALEGCDVVIIPAGVPRKP 108          

HSP 2 Score: 70.4774 bits (171), Expect = 1.040e-37
Identity = 35/68 (51.47%), Postives = 46/68 (67.65%), Query Frame = 2
Query:  446 GVPRNPGMTREDLFKINAGMAGTLCEGIAKCGPNATVNLISNPGNSKVPYGRKGFQKSGDFMNQKTPG 649
            GVPR PGMTR+DLF INAG+  +L   IAK  P+A +N+ISNP NS VP   +  +K+G +  +K  G
Sbjct:  103 GVPRKPGMTRDDLFNINAGIVRSLTAAIAKYCPHAIINMISNPVNSTVPIASEVLKKAGVYDEKKLFG 170          
BLAST of EY665274 vs. ExPASy Swiss-Prot
Match: MDHM_MACFA (Malate dehydrogenase, mitochondrial OS=Macaca fascicularis GN=MDH2 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.065e-33
Identity = 48/81 (59.26%), Postives = 65/81 (80.25%), Query Frame = 1
Query:  220 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGVDLVIIPARRSEEP 462
            KVA+LGA+GGIGQPL++L+K +PLVS L LYD+ +TPGV AD+SH++T AVV+G+LG  QL + L G D+V+IPA    +P
Sbjct:   26 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETKAVVKGYLGPEQLPDCLKGCDVVVIPAGVPRKP 106          

HSP 2 Score: 59.6918 bits (143), Expect = 4.065e-33
Identity = 34/84 (40.48%), Postives = 47/84 (55.95%), Query Frame = 2
Query:  446 GVPRNPGMTREDLFKINAGMAGTLCEGIAKCGPNATVNLISNPGNSKVPYGRKGFQKSGDFMNQKTPGGVQWVQGEKPHTFRGE 697
            GVPR PGMTR+DLF  NA +  TL    A+  P A + +I+NP NS +P   + F+K G + N     GV  +   + +TF  E
Sbjct:  101 GVPRKPGMTRDDLFNTNATIVATLAAACAQHRPEAMICIIANPVNSTIPITAEVFKKHGVY-NPSKIFGVTTLDIVRANTFVAE 183          
BLAST of EY665274 vs. ExPASy Swiss-Prot
Match: MDHM_PIG (Malate dehydrogenase, mitochondrial OS=Sus scrofa GN=MDH2 PE=1 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 8.981e-33
Identity = 47/81 (58.02%), Postives = 64/81 (79.01%), Query Frame = 1
Query:  220 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGVDLVIIPARRSEEP 462
            KVA+LGA+GGIGQPL++L+K +PLVS L LYD+ +TPGV AD+SH++T A V+G+LG  QL + L G D+V+IPA    +P
Sbjct:   26 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPRKP 106          

HSP 2 Score: 60.077 bits (144), Expect = 8.981e-33
Identity = 31/68 (45.59%), Postives = 41/68 (60.29%), Query Frame = 2
Query:  446 GVPRNPGMTREDLFKINAGMAGTLCEGIAKCGPNATVNLISNPGNSKVPYGRKGFQKSGDFMNQKTPG 649
            GVPR PGMTR+DLF  NA +  TL    A+  P+A + +ISNP NS +P   + F+K G +   K  G
Sbjct:  101 GVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVNSTIPITAEVFKKHGVYNPNKIFG 168          
BLAST of EY665274 vs. ExPASy Swiss-Prot
Match: MDHM_BOVIN (Malate dehydrogenase, mitochondrial OS=Bos taurus GN=MDH2 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.170e-32
Identity = 47/81 (58.02%), Postives = 64/81 (79.01%), Query Frame = 1
Query:  220 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGVDLVIIPARRSEEP 462
            KVA+LGA+GGIGQPL++L+K +PLVS L LYD+ +TPGV AD+SH++T A V+G+LG  QL + L G D+V+IPA    +P
Sbjct:   26 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPRKP 106          

HSP 2 Score: 59.6918 bits (143), Expect = 1.170e-32
Identity = 31/68 (45.59%), Postives = 40/68 (58.82%), Query Frame = 2
Query:  446 GVPRNPGMTREDLFKINAGMAGTLCEGIAKCGPNATVNLISNPGNSKVPYGRKGFQKSGDFMNQKTPG 649
            GVPR PGMTR+DLF  NA +  TL    A+  P A + +ISNP NS +P   + F+K G +   K  G
Sbjct:  101 GVPRKPGMTRDDLFNTNATIVATLTAACAQHCPEAMICIISNPVNSTIPITAEVFKKHGVYNPNKIFG 168          
BLAST of EY665274 vs. ExPASy Swiss-Prot
Match: MDHM_PONAB (Malate dehydrogenase, mitochondrial OS=Pongo abelii GN=MDH2 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.984e-32
Identity = 47/81 (58.02%), Postives = 64/81 (79.01%), Query Frame = 1
Query:  220 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGVDLVIIPARRSEEP 462
            KVA+LGA+GGIGQPL++L+K +PLVS L LYD+ +TPGV AD+SH++T A V+G+LG  QL + L G D+V+IPA    +P
Sbjct:   26 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETKATVKGYLGPEQLPDCLKGCDVVVIPAGVPRKP 106          

HSP 2 Score: 58.9214 bits (141), Expect = 1.984e-32
Identity = 34/84 (40.48%), Postives = 47/84 (55.95%), Query Frame = 2
Query:  446 GVPRNPGMTREDLFKINAGMAGTLCEGIAKCGPNATVNLISNPGNSKVPYGRKGFQKSGDFMNQKTPGGVQWVQGEKPHTFRGE 697
            GVPR PGMTR+DLF  NA +  TL    A+  P A + +I+NP NS +P   + F+K G + N     GV  +   + +TF  E
Sbjct:  101 GVPRKPGMTRDDLFNTNATIVATLTSACAQHCPEAMICVIANPVNSTIPITAEVFKKHGVY-NPNKIFGVTTLDIVRANTFVAE 183          
BLAST of EY665274 vs. ExPASy Swiss-Prot
Match: MDHM_RAT (Malate dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Mdh2 PE=1 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 1.984e-32
Identity = 47/81 (58.02%), Postives = 64/81 (79.01%), Query Frame = 1
Query:  220 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGVDLVIIPARRSEEP 462
            KVA+LGA+GGIGQPL++L+K +PLVS L LYD+ +TPGV AD+SH++T A V+G+LG  QL + L G D+V+IPA    +P
Sbjct:   26 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRANVKGYLGPEQLPDCLKGCDVVVIPAGVPRKP 106          

HSP 2 Score: 60.077 bits (144), Expect = 1.984e-32
Identity = 35/84 (41.67%), Postives = 47/84 (55.95%), Query Frame = 2
Query:  446 GVPRNPGMTREDLFKINAGMAGTLCEGIAKCGPNATVNLISNPGNSKVPYGRKGFQKSGDFMNQKTPGGVQWVQGEKPHTFRGE 697
            GVPR PGMTR+DLF  NA +  TL    A+  P A + +ISNP NS +P   + F+K G + N     GV  +   + +TF  E
Sbjct:  101 GVPRKPGMTRDDLFNTNATIVATLTAACAQHCPEAMICIISNPVNSTIPITAEVFKKHGVY-NPNKIFGVTTLDIVRANTFVAE 183          
BLAST of EY665274 vs. ExPASy Swiss-Prot
Match: MDHM_HUMAN (Malate dehydrogenase, mitochondrial OS=Homo sapiens GN=MDH2 PE=1 SV=3)

HSP 1 Score: 99.7525 bits (247), Expect = 2.583e-32
Identity = 47/81 (58.02%), Postives = 64/81 (79.01%), Query Frame = 1
Query:  220 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGVDLVIIPARRSEEP 462
            KVA+LGA+GGIGQPL++L+K +PLVS L LYD+ +TPGV AD+SH++T A V+G+LG  QL + L G D+V+IPA    +P
Sbjct:   26 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETKAAVKGYLGPEQLPDCLKGCDVVVIPAGVPRKP 106          

HSP 2 Score: 58.5362 bits (140), Expect = 2.583e-32
Identity = 34/84 (40.48%), Postives = 47/84 (55.95%), Query Frame = 2
Query:  446 GVPRNPGMTREDLFKINAGMAGTLCEGIAKCGPNATVNLISNPGNSKVPYGRKGFQKSGDFMNQKTPGGVQWVQGEKPHTFRGE 697
            GVPR PGMTR+DLF  NA +  TL    A+  P A + +I+NP NS +P   + F+K G + N     GV  +   + +TF  E
Sbjct:  101 GVPRKPGMTRDDLFNTNATIVATLTAACAQHCPEAMICVIANPVNSTIPITAEVFKKHGVY-NPNKIFGVTTLDIVRANTFVAE 183          
BLAST of EY665274 vs. ExPASy Swiss-Prot
Match: MDHM_MOUSE (Malate dehydrogenase, mitochondrial OS=Mus musculus GN=Mdh2 PE=1 SV=3)

HSP 1 Score: 98.5969 bits (244), Expect = 3.364e-32
Identity = 47/81 (58.02%), Postives = 64/81 (79.01%), Query Frame = 1
Query:  220 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGVDLVIIPARRSEEP 462
            KVA+LGA+GGIGQPL++L+K +PLVS L LYD+ +TPGV AD+SH++T A V+G+LG  QL + L G D+V+IPA    +P
Sbjct:   26 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRANVKGYLGPEQLPDCLKGCDVVVIPAGVPRKP 106          

HSP 2 Score: 59.3066 bits (142), Expect = 3.364e-32
Identity = 35/84 (41.67%), Postives = 47/84 (55.95%), Query Frame = 2
Query:  446 GVPRNPGMTREDLFKINAGMAGTLCEGIAKCGPNATVNLISNPGNSKVPYGRKGFQKSGDFMNQKTPGGVQWVQGEKPHTFRGE 697
            GVPR PGMTR+DLF  NA +  TL    A+  P A V +I+NP NS +P   + F+K G + N     GV  +   + +TF  E
Sbjct:  101 GVPRKPGMTRDDLFNTNATIVATLTAACAQHCPEAMVCIIANPVNSTIPITAEVFKKHGVY-NPNKIFGVTTLDIVRANTFVAE 183          
BLAST of EY665274 vs. ExPASy Swiss-Prot
Match: MDHP_YEAST (Malate dehydrogenase, peroxisomal OS=Saccharomyces cerevisiae GN=MDH3 PE=1 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 2.856e-27
Identity = 36/81 (44.44%), Postives = 56/81 (69.14%), Query Frame = 1
Query:  220 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGVDLVIIPARRSEEP 462
            KVAILGA+GG+GQPL++L+K++P VS L LYD+    G+  D+SH++T +   G+  +  +EN L+   +V+IPA    +P
Sbjct:    3 KVAILGASGGVGQPLSLLLKLSPYVSELALYDIRAAEGIGKDLSHINTNSSCVGY-DKDSIENTLSNAQVVLIPAGVPRKP 82          

HSP 2 Score: 67.3958 bits (163), Expect = 2.856e-27
Identity = 35/73 (47.95%), Postives = 45/73 (61.64%), Query Frame = 2
Query:  446 GVPRNPGMTREDLFKINAGMAGTLCEGIAKCGPNATVNLISNPGNSKVPYGRKGFQKSGDFMNQKTPGGVQWV 664
            GVPR PG+TR+DLFK+NAG+  +L   + K  PNA + +ISNP NS VP   +  +K G F     PG V  V
Sbjct:   77 GVPRKPGLTRDDLFKMNAGIVKSLVTAVGKFAPNARILVISNPVNSLVPIAVETLKKMGKF----KPGNVMGV 145          
BLAST of EY665274 vs. ExPASy Swiss-Prot
Match: MDHM_YEAST (Malate dehydrogenase, mitochondrial OS=Saccharomyces cerevisiae GN=MDH1 PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 8.204e-27
Identity = 40/84 (47.62%), Postives = 56/84 (66.67%), Query Frame = 1
Query:  217 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ--LENALTGVDLVIIPARRSEEP 462
            +KV +LGA GGIGQPL++L+K+N  V+ L LYD+    GV  D+SH+ T +VV+GF  +    L NAL   D+V+IPA    +P
Sbjct:   18 YKVTVLGAGGGIGQPLSLLLKLNHKVTDLRLYDLKGAKGVATDLSHIPTNSVVKGFTPEEPDGLNNALKDTDMVLIPAGVPRKP 101          

HSP 2 Score: 60.077 bits (144), Expect = 8.204e-27
Identity = 31/68 (45.59%), Postives = 40/68 (58.82%), Query Frame = 2
Query:  446 GVPRNPGMTREDLFKINAGMAGTLCEGIAKCGPNATVNLISNPGNSKVPYGRKGFQKSGDFMNQKTPG 649
            GVPR PGMTR+DLF INA +   L    A+  PNA + +ISNP NS VP   +  +  G +  +K  G
Sbjct:   96 GVPRKPGMTRDDLFAINASIVRDLAAATAESAPNAAILVISNPVNSTVPIVAQVLKNKGVYNPKKLFG 163          
The following BLAST results are available for this feature:
BLAST of EY665274 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
MDHM_FRAAN1.040e-3762.96Malate dehydrogenase, mitochondrial OS=Fragaria an... [more]
MDHM_MACFA4.065e-3359.26Malate dehydrogenase, mitochondrial OS=Macaca fasc... [more]
MDHM_PIG8.981e-3358.02Malate dehydrogenase, mitochondrial OS=Sus scrofa ... [more]
MDHM_BOVIN1.170e-3258.02Malate dehydrogenase, mitochondrial OS=Bos taurus ... [more]
MDHM_PONAB1.984e-3258.02Malate dehydrogenase, mitochondrial OS=Pongo abeli... [more]
MDHM_RAT1.984e-3258.02Malate dehydrogenase, mitochondrial OS=Rattus norv... [more]
MDHM_HUMAN2.583e-3258.02Malate dehydrogenase, mitochondrial OS=Homo sapien... [more]
MDHM_MOUSE3.364e-3258.02Malate dehydrogenase, mitochondrial OS=Mus musculu... [more]
MDHP_YEAST2.856e-2744.44Malate dehydrogenase, peroxisomal OS=Saccharomyces... [more]
MDHM_YEAST8.204e-2747.62Malate dehydrogenase, mitochondrial OS=Saccharomyc... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-086-A09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665274 ID=EY665274; Name=EY665274; organism=Citrus sinensis; type=EST; length=1084bp
ATTTTTATATTCTAATTCAATCCATTCATTCTTTGCATGTATCATTATTG
ATCACATTCACACCACCATACTTCAACAAAGAAAATGGAGTTTAGCTCAG
AGGCTAATCAGCGCATTGCTAGAATCTCTGCTCATCTTTACCCTCCAAAT
CTCCAGATGGAGGAGAATTCTTGCTTGAGGCAAGCTAAATGCCGGGCAAA
AGGCGGGGCAGCTGGATTCAAAGTAGCCATCTTGGGTGCTGCTGGAGGCA
TTGGTCAACCCCTTGCAATGCTAATGAAGATAAACCCCCTGGTCTCAGTC
CTTCACCTCTATGATGTTGTCAATACCCCTGGTGTCACTGCTGATATTAG
CCATATGGACACCGGCGCTGTGGTACGGGGTTTCCTAGGCCAGCCACAGC
TTGAGAATGCTCTCACAGGGGTGGACCTTGTCATTATCCCTGCCCGGCGT
TCCGAGGAACCCTGGAATGACCAGGGAAGATCTTTTCAAAATCAATGCTG
GAATGGCCGGGACACTCTGTGAAGGGATCGCAAAGTGTGGCCCCAATGCG
ACTGTCAATTTGATCAGTAATCCAGGGAACTCCAAAGTTCCTTATGGCCG
CAAAGGTTTTCAAAAAAGCGGGGACTTTATGAACCAAAAAACTCCTGGGG
GAGTACAATGGGTCCAAGGCGAAAAACCCCACACATTTCGGGGGGAAAAT
TTTGGGGAACTTGGTTCCCTAGGGATGTTGGGGGTCCCGGTTTGGGGGGG
GCCATGGGGGGGAAAAAAATTTTTGGCCCCTTTTTTAAAAGAGGGTAAAA
ACCCTCCTTTGAAATTTTCTTTAAAAAAAAAAAAAAGGAAAAAACACGGA
GAAAAACCCCCCAACAAAAAAAGGGGGGGGGAAAAAAAAAAATTGTGTGG
GAAGAGGGAAAAAAAGGGGGGGGGGGGGGGGGGGGTCTGCCCCGGACACA
CCCCTTACCCCCAAATGGGGGAATTATAATGAAGGAGCCGCGACGTGGTT
TATTAAATAAATTTTTTTTTTTTGGGAAGGAGGAGAGAAACGAATGAGTA
GAGCCTCTGCCAGCGCTACCCCCTCCTCCCCTCC
back to top