EY665274

Overview
NameEY665274
Unique NameEY665274
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1084
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665274 vs. ExPASy Swiss-Prot
Match: MDH_COLP3 (Malate dehydrogenase OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=mdh PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.618e-13
Identity = 46/91 (50.55%), Postives = 57/91 (62.64%), Query Frame = 1
Query:  220 KVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGVDLVIIPARRSEEPWNDQGRSF 486
            KVA+LGAAGGIGQ L++L+K   P  S L LYDV    PGV  D+SH+ T   V GF G+  L  ALTG D+V+IPA    +P  D+   F
Sbjct:    2 KVAVLGAAGGIGQALSLLLKTQLPAGSELSLYDVAPVVPGVAVDLSHIPTDVKVAGF-GRDDLNGALTGADIVLIPAGMPRKPGMDRADLF 91          
BLAST of EY665274 vs. ExPASy Swiss-Prot
Match: MDH_PASMU (Malate dehydrogenase OS=Pasteurella multocida GN=mdh PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 3.605e-13
Identity = 48/111 (43.24%), Postives = 67/111 (60.36%), Query Frame = 1
Query:  220 KVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGVDLVIIPARRSEEPWNDQGRSFQNQCWNGRDTL*RDRKVWPQ 546
            KVA+LGAAGGIGQ LA+L+K+  P  S L LYD+   TPGV AD+SH+ T   V+GF G+     AL G D+V+I A  + +P  D+   F       R+ + +  +V P+
Sbjct:    2 KVAVLGAAGGIGQALALLLKLQLPAGSELSLYDIAPVTPGVAADVSHIPTAVKVQGFAGEDPTP-ALQGADVVLISAGVARKPGMDRSDLFNINAGIVRNLIEKVAQVCPK 111          
BLAST of EY665274 vs. ExPASy Swiss-Prot
Match: MDH_MANSM (Malate dehydrogenase OS=Mannheimia succiniciproducens (strain MBEL55E) GN=mdh PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.049e-12
Identity = 45/83 (54.22%), Postives = 55/83 (66.27%), Query Frame = 1
Query:  220 KVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGVDLVIIPARRSEEP 462
            KVA+LGAAGGIGQ LA+L+K+  P  S L LYDV   TPGV  D+SH+ T  VV GF G    E AL G D+V+I A  + +P
Sbjct:    2 KVAVLGAAGGIGQALALLLKLQLPAGSSLSLYDVAPVTPGVAKDLSHIPTDVVVEGFAGTDPSE-ALKGADIVLISAGVARKP 83          
BLAST of EY665274 vs. ExPASy Swiss-Prot
Match: MDH_HAES2 (Malate dehydrogenase OS=Haemophilus somnus (strain 2336) GN=mdh PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.049e-12
Identity = 45/94 (47.87%), Postives = 61/94 (64.89%), Query Frame = 1
Query:  220 KVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQ---PQLENALTGVDLVIIPARRSEEPWNDQGRSF 486
            K+A+LGAAGGIGQ LA+L+K+  P  S L LYD+   TPGV AD+SH+ T   ++GF G+   P LENA    D+V+I A  + +P  D+   F
Sbjct:    2 KIAVLGAAGGIGQALALLLKLQLPAGSELSLYDIAPVTPGVAADVSHIPTAVKIQGFAGEDPIPALENA----DVVLISAGVARKPGMDRSDLF 91          
BLAST of EY665274 vs. ExPASy Swiss-Prot
Match: MDH_HAES1 (Malate dehydrogenase OS=Haemophilus somnus (strain 129Pt) GN=mdh PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.049e-12
Identity = 45/94 (47.87%), Postives = 61/94 (64.89%), Query Frame = 1
Query:  220 KVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQ---PQLENALTGVDLVIIPARRSEEPWNDQGRSF 486
            K+A+LGAAGGIGQ LA+L+K+  P  S L LYD+   TPGV AD+SH+ T   ++GF G+   P LENA    D+V+I A  + +P  D+   F
Sbjct:    2 KIAVLGAAGGIGQALALLLKLQLPAGSELSLYDIAPVTPGVAADVSHIPTAVKIQGFAGEDPTPALENA----DVVLISAGVARKPGMDRSDLF 91          
BLAST of EY665274 vs. ExPASy Swiss-Prot
Match: MDH_SHEWM (Malate dehydrogenase OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=mdh PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.370e-12
Identity = 45/91 (49.45%), Postives = 57/91 (62.64%), Query Frame = 1
Query:  220 KVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGVDLVIIPARRSEEPWNDQGRSF 486
            KVA+LGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   V+GF GQ     AL G D+V+I A  + +P  D+   F
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPADSKLSLYDIAPVTPGVAVDLSHIPTAVEVKGFAGQDP-SPALEGADVVLISAGVARKPGMDRSDLF 91          
BLAST of EY665274 vs. ExPASy Swiss-Prot
Match: MDH_SHEFN (Malate dehydrogenase OS=Shewanella frigidimarina (strain NCIMB 400) GN=mdh PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.370e-12
Identity = 44/91 (48.35%), Postives = 58/91 (63.74%), Query Frame = 1
Query:  220 KVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGVDLVIIPARRSEEPWNDQGRSF 486
            KVA+LGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   V+GF GQ   + AL G D+V++ A  + +P  D+   F
Sbjct:    2 KVAVLGAAGGIGQALALLLKTQLPAGSKLSLYDIAPVTPGVAVDLSHIPTDVEVKGFAGQDPTD-ALVGADVVLMSAGVARKPGMDRSDLF 91          
BLAST of EY665274 vs. ExPASy Swiss-Prot
Match: MDH_PSEA6 (Malate dehydrogenase OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=mdh PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.370e-12
Identity = 45/91 (49.45%), Postives = 57/91 (62.64%), Query Frame = 1
Query:  220 KVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGVDLVIIPARRSEEPWNDQGRSF 486
            KVA+LGAAGGIGQ L++L+K   P  + L LYDV    PGV  D+SH+ T   V GF G+  L  ALTG D+V+IPA    +P  D+   F
Sbjct:    2 KVAVLGAAGGIGQALSLLLKTQLPAGTELALYDVAPVVPGVAVDLSHIPTDVKVEGF-GKDDLAKALTGSDIVLIPAGVPRKPGMDRSDLF 91          
BLAST of EY665274 vs. ExPASy Swiss-Prot
Match: MDH_IDILO (Malate dehydrogenase OS=Idiomarina loihiensis GN=mdh PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.789e-12
Identity = 45/91 (49.45%), Postives = 57/91 (62.64%), Query Frame = 1
Query:  220 KVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGVDLVIIPARRSEEPWNDQGRSF 486
            KVA+LGAAGGIGQ L++L+K   P  S L LYDV    PGV  D+SH+ T   V GF G+  L +AL G D+V+IPA    +P  D+   F
Sbjct:    2 KVAVLGAAGGIGQALSLLLKTQLPAGSELSLYDVAPVVPGVAVDLSHIPTDVKVTGF-GKDDLASALVGSDIVLIPAGVPRKPGMDRSDLF 91          
BLAST of EY665274 vs. ExPASy Swiss-Prot
Match: MDH_ALTMD (Malate dehydrogenase OS=Alteromonas macleodii (strain DSM 17117 / Deep ecotype) GN=mdh PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.789e-12
Identity = 45/91 (49.45%), Postives = 57/91 (62.64%), Query Frame = 1
Query:  220 KVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGVDLVIIPARRSEEPWNDQGRSF 486
            KVA+LGAAGGIGQ L++L+K   P  S L LYDV    PGV  D+SH+ T   V G  G+  L +ALTG D+V+IPA    +P  D+   F
Sbjct:    2 KVAVLGAAGGIGQALSLLLKTQLPAGSDLALYDVAPVVPGVAVDLSHIPTAVKVTGH-GKDDLADALTGADVVLIPAGMPRKPGMDRSDLF 91          
The following BLAST results are available for this feature:
BLAST of EY665274 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
MDH_COLP31.618e-1350.55Malate dehydrogenase OS=Colwellia psychrerythraea ... [more]
MDH_PASMU3.605e-1343.24Malate dehydrogenase OS=Pasteurella multocida GN=m... [more]
MDH_MANSM1.049e-1254.22Malate dehydrogenase OS=Mannheimia succiniciproduc... [more]
MDH_HAES21.049e-1247.87Malate dehydrogenase OS=Haemophilus somnus (strain... [more]
MDH_HAES11.049e-1247.87Malate dehydrogenase OS=Haemophilus somnus (strain... [more]
MDH_SHEWM1.370e-1249.45Malate dehydrogenase OS=Shewanella woodyi (strain ... [more]
MDH_SHEFN1.370e-1248.35Malate dehydrogenase OS=Shewanella frigidimarina (... [more]
MDH_PSEA61.370e-1249.45Malate dehydrogenase OS=Pseudoalteromonas atlantic... [more]
MDH_IDILO1.789e-1249.45Malate dehydrogenase OS=Idiomarina loihiensis GN=m... [more]
MDH_ALTMD1.789e-1249.45Malate dehydrogenase OS=Alteromonas macleodii (str... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-086-A09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665274 ID=EY665274; Name=EY665274; organism=Citrus sinensis; type=EST; length=1084bp
ATTTTTATATTCTAATTCAATCCATTCATTCTTTGCATGTATCATTATTG
ATCACATTCACACCACCATACTTCAACAAAGAAAATGGAGTTTAGCTCAG
AGGCTAATCAGCGCATTGCTAGAATCTCTGCTCATCTTTACCCTCCAAAT
CTCCAGATGGAGGAGAATTCTTGCTTGAGGCAAGCTAAATGCCGGGCAAA
AGGCGGGGCAGCTGGATTCAAAGTAGCCATCTTGGGTGCTGCTGGAGGCA
TTGGTCAACCCCTTGCAATGCTAATGAAGATAAACCCCCTGGTCTCAGTC
CTTCACCTCTATGATGTTGTCAATACCCCTGGTGTCACTGCTGATATTAG
CCATATGGACACCGGCGCTGTGGTACGGGGTTTCCTAGGCCAGCCACAGC
TTGAGAATGCTCTCACAGGGGTGGACCTTGTCATTATCCCTGCCCGGCGT
TCCGAGGAACCCTGGAATGACCAGGGAAGATCTTTTCAAAATCAATGCTG
GAATGGCCGGGACACTCTGTGAAGGGATCGCAAAGTGTGGCCCCAATGCG
ACTGTCAATTTGATCAGTAATCCAGGGAACTCCAAAGTTCCTTATGGCCG
CAAAGGTTTTCAAAAAAGCGGGGACTTTATGAACCAAAAAACTCCTGGGG
GAGTACAATGGGTCCAAGGCGAAAAACCCCACACATTTCGGGGGGAAAAT
TTTGGGGAACTTGGTTCCCTAGGGATGTTGGGGGTCCCGGTTTGGGGGGG
GCCATGGGGGGGAAAAAAATTTTTGGCCCCTTTTTTAAAAGAGGGTAAAA
ACCCTCCTTTGAAATTTTCTTTAAAAAAAAAAAAAAGGAAAAAACACGGA
GAAAAACCCCCCAACAAAAAAAGGGGGGGGGAAAAAAAAAAATTGTGTGG
GAAGAGGGAAAAAAAGGGGGGGGGGGGGGGGGGGGTCTGCCCCGGACACA
CCCCTTACCCCCAAATGGGGGAATTATAATGAAGGAGCCGCGACGTGGTT
TATTAAATAAATTTTTTTTTTTTGGGAAGGAGGAGAGAAACGAATGAGTA
GAGCCTCTGCCAGCGCTACCCCCTCCTCCCCTCC
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