CV884398

Overview
NameCV884398
Unique NameCV884398
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length889
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884398 vs. ExPASy Swiss-Prot
Match: ERF3_SCHPO (Eukaryotic peptide chain release factor GTP-binding subunit OS=Schizosaccharomyces pombe GN=sup35 PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 3.737e-15
Identity = 52/176 (29.55%), Postives = 91/176 (51.70%), Query Frame = -3
Query:  363 VETGVLKPGMVVTFGPSGLTTEVKSV-EMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSV 887
            +E G +K    V   P   T EV ++ +   E +  ++ GD V   V+     D++ G+V +++K+ P      F +Q+ I+  P  +  GY+ V+  HT+   V F++L+ K+D+ + K  +K P F   G   + ++    P+ +E F DY  +GRF +RD   TVAVG +  +
Sbjct:  488 IEAGSIKKNSNVLVMPINQTLEVTAIYDEADEEISSSICGDQVRLRVRGDD-SDVQTGYVLTSTKN-PVHATTRFIAQIAILELPSILTTGYSCVMHIHTAVEEVSFAKLLHKLDKTNRKS-KKPPMFATKGMKIIAELETQTPVCMERFEDYQYMGRFTLRDQGTTVAVGKVVKI 660          
BLAST of CV884398 vs. ExPASy Swiss-Prot
Match: HBS1L_HUMAN (HBS1-like protein OS=Homo sapiens GN=HBS1L PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.422e-14
Identity = 44/177 (24.86%), Postives = 87/177 (49.15%), Query Frame = -3
Query:  357 VETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEK 887
            +E G ++ G  +   P   T  VK + +H E +  A  GD+V   +  + +  +  G +    K  P +    F ++++I N    I  G+  +L   T         L++ +++ +G+  +K+PKFL  G   +V++   +P+ +E + D+  LGRF +R    T+A GV+  +++
Sbjct:  509 IEAGYIQTGDRLLAMPPNETCTVKGITLHDEPVDWAAAGDHVSLTLVGMDIIKINVGCIFCGPKV-PIKACTRFRARILIFNIEIPITKGFPVLLHYQTVSEPAVIKRLISVLNKSTGEVTKKKPKFLTKGQNALVELQTQRPIALELYKDFKELGRFMLRYGGSTIAAGVVTEIKE 684          
BLAST of CV884398 vs. ExPASy Swiss-Prot
Match: HBS1L_PONAB (HBS1-like protein OS=Pongo abelii GN=HBS1L PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.132e-14
Identity = 44/177 (24.86%), Postives = 87/177 (49.15%), Query Frame = -3
Query:  357 VETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEK 887
            +E G ++ G  +   P   T  VK + +H E +  A  GD+V   +  + +  +  G +    K  P +    F ++++I N    I  G+  +L   T         L++ +++ +G+  +K+PKFL  G   +V++   +P+ +E + D+  LGRF +R    T+A GV+  +++
Sbjct:  509 IEAGYIQTGDRLLAMPPNETCTVKGITLHDEPVDWAAAGDHVSLTLVGMDIIKINVGCIFCGPKV-PIKACTRFRARILIFNIEIPITKGFPVLLHYQTVSEPAVIKRLISVLNKSTGEVTKKKPKFLTKGQNALVELQTQRPIALELYKDFKELGRFMLRYGGSTIAAGVVTEMKE 684          
BLAST of CV884398 vs. ExPASy Swiss-Prot
Match: HBS1L_RAT (HBS1-like protein OS=Rattus norvegicus GN=Hbs1l PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.048e-14
Identity = 43/177 (24.29%), Postives = 86/177 (48.59%), Query Frame = -3
Query:  357 VETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEK 887
            +E G ++ G  +   P   T   K + +H E +  A  GD+V   +  + +  +  G +    K+ P +    F ++++I N    I  G+  +L   T         L++ +++ +G+  +K+PK L  G   +V++   +P+ +E + D+  LGRF +R    TVA GV+  +++
Sbjct:  504 IEAGYVQTGDRLLAMPPNETCTAKGITLHDEPVDWAAAGDHVSLTLVGMDIIKINVGCIFCGPKE-PIKACTRFRARILIFNIEVPITKGFPVLLHYQTVSEPAVIKRLISVLNKSTGEVTKKKPKLLTKGQNALVELQTQRPVALELYKDFKELGRFMLRYGGSTVAAGVVTEIKE 679          
BLAST of CV884398 vs. ExPASy Swiss-Prot
Match: HBS1L_MOUSE (HBS1-like protein OS=Mus musculus GN=Hbs1l PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 7.048e-14
Identity = 42/177 (23.73%), Postives = 86/177 (48.59%), Query Frame = -3
Query:  357 VETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEK 887
            +E G ++ G  +   P   T   K + +H E +  A  GD+V   +  + +  +  G +    K+ P +    F +++++ N    I  G+  +L   T         L++ +++ +G+  +K+PK L  G   +V++   +P+ +E + D+  LGRF +R    TVA GV+  +++
Sbjct:  507 IEAGYIQTGDRLLAMPPNETCTAKGITLHDEPVDWAAAGDHVNLTLVGMDIIKINVGCIFCGPKE-PIKACTRFRARILVFNIEVPITKGFPVLLHYQTVSEPAVIKRLISVLNKSTGEVTKKKPKLLTKGQNALVELQTQRPVALELYKDFKELGRFMLRYGGSTVAAGVVTEIKE 682          
BLAST of CV884398 vs. ExPASy Swiss-Prot
Match: HBS1L_BOVIN (HBS1-like protein OS=Bos taurus GN=HBS1L PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.051e-13
Identity = 42/176 (23.86%), Postives = 85/176 (48.30%), Query Frame = -3
Query:  360 VETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVE 887
            +E G ++ G  +   P   T   K + +H E +  A  GD+V   +  + +  +  G +    K+ P +    F ++++I N    I  G+  +L   T         L++ +++ +G+  +K+PK L  G   +V++   +P+ +E + D+  LGRF +R    T+A GV+  ++
Sbjct:  511 IEAGYIQTGDRLLAMPPNETCTAKGITLHDEPVDWAAAGDHVSLTLVGMDIIKINVGCIFCVPKE-PIKVCTRFRARILIFNIEIPITKGFPVLLHYQTVSEPAVIKRLISVLNKSTGEVTKKKPKLLTKGQNALVELQTQRPVALELYKDFKELGRFMLRYSGSTIAAGVVTEIK 685          
BLAST of CV884398 vs. ExPASy Swiss-Prot
Match: EF1A_ENCCU (Elongation factor 1-alpha OS=Encephalitozoon cuniculi GN=TEF1 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.018e-12
Identity = 43/182 (23.63%), Postives = 90/182 (49.45%), Query Frame = -3
Query:  351 VETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKR---GFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKD 887
            VE G + P + +T  P+G+  E +SVE+H++       G+N G  +K   + ++ +   G V S + ++ A        + I++  P  +  GY P ++    H   + +++++K+    GKE+ + P+ + NG+     ++  KP+V++    +  L +FA+ D    V +G +     +D
Sbjct:  301 VEYGTITPNLKITIQPAGVVGETRSVEIHNKPRSMIPCGENCGVALKGGVIGEIDKVDAGHVISANDENKAVAYPGAKIRTIVVGRPKGLSPGYTPQINFGNCHSPGRIAKILSKV---VGKEVHENPENVANGENFTGIVVFQKPLVIDKMERFQNLAKFALMDSNGVVGIGNVMEPLTRD 479          
BLAST of CV884398 vs. ExPASy Swiss-Prot
Match: ERF3_DICDI (Eukaryotic peptide chain release factor GTP-binding subunit OS=Dictyostelium discoideum GN=erf3 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.125e-11
Identity = 45/181 (24.86%), Postives = 85/181 (46.96%), Query Frame = -3
Query:  354 VETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQ---IGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 887
            VE+G +  G  +   P     EV S+     + + A PG+N+   +K +   D  R        + P    +   + V I++ P +       ++ +   HT+   V    L+  ID ++  E++++P F K GDA   +++  + + +E F+  P L RF +RD  +T+A G + ++ KK
Sbjct:  366 VESGTISVGQSIHIMPGKTKVEVISLTGDICSFKTARPGENITIALKGIEGDDSIRPGSILAEINRPVPVVSEIEAIVYILDMPEERRLFTPSFSAIFHAHTAVEDVTVKSLIATIDTKTSTEIKQKPTFCKVGDAVKCRLVLGRAVCLEEFTTNPQLARFTIRDSTKTIAFGKVINIGKK 546          
The following BLAST results are available for this feature:
BLAST of CV884398 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 178
Match NameE-valueIdentityDescription
ERF3_SCHPO3.737e-1529.55Eukaryotic peptide chain release factor GTP-bindin... [more]
HBS1L_HUMAN2.422e-1424.86HBS1-like protein OS=Homo sapiens GN=HBS1L PE=1 SV... [more]
HBS1L_PONAB4.132e-1424.86HBS1-like protein OS=Pongo abelii GN=HBS1L PE=2 SV... [more]
HBS1L_RAT7.048e-1424.29HBS1-like protein OS=Rattus norvegicus GN=Hbs1l PE... [more]
HBS1L_MOUSE7.048e-1423.73HBS1-like protein OS=Mus musculus GN=Hbs1l PE=1 SV... [more]
HBS1L_BOVIN2.051e-1323.86HBS1-like protein OS=Bos taurus GN=HBS1L PE=2 SV=1[more]
EF1A_ENCCU1.018e-1223.63Elongation factor 1-alpha OS=Encephalitozoon cunic... [more]
ERF3_DICDI1.125e-1124.86Eukaryotic peptide chain release factor GTP-bindin... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_003B11_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_003_T3_B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884398 ID=CV884398; Name=CV884398; organism=Citrus sinensis; type=EST; length=889bp
TTTTTAATCAAAGAGCTTAAAATGAGCTTCCAAATGTATTAAAACCACCA
ACTTTGACATCCAGCAGCTGGTCTATAAACTTCACAACTCAATTTAGTGC
TATTAACCAAATTCAGAATATAAAAATCCGAACACCCACCACAGCCAGTT
AAGCAGAAAGATAACATCCCAATTGCTCAACAGCAAACTGGTGGAAGCAA
ATAGGGCTGTTTGCAGAAACATTGATGCAAAACAAAAACAGACAAGAAAA
TAAAAAAAGACAGAAAATAAACCCTAACTATTGTAGACAGACCCATAAAA
ATTTCTCATTTCTTCTTGGCTGCGGACTTGGTGACCTTCGCACCTGTGGG
ATCCTTCTTCTCAACACTCTTGATAACACCCACAGCAACAGTCTGACGCA
TGTCCCTAACAGCAAAACGACCAAGGGGTGGGTAATCGGAGAAGGTTTCA
ACAACCATGGGCTTGGTGGGAATCATCTTAACCATTCCGGCGTCTCCATT
CTTCAAGAACTTGGGCTCCTTCTCAAGCTCCTTGCCTGATCGCCTATCAA
TCTTCGTCACGAGCTCAGAAAACTTGACGGCAATGTGGGAGGTGTGGCAG
TCAAGCACTGGGGCATATCCATTTCCAATCTGGCCAGGGTGGTTCATGAT
GATGACCTGTGAGGTGAAGTTGGCAGCTTCCCTGGCCGGATCATCCTTCG
AGTTGGAAGCAACAAAACCACGCTTGAGATCCTTGACAGCAACGTTCTTC
ACGTTGAAACCAACATTGTCACCCGGAAGGGCCTCCTGCAGAGCTTCGTG
GTGCATCTCAACAGACTTAACCTCAGTTGTCAATCCAGAGGGGCCAAATG
TCACCACCATACCAGGCTTGAGGACACCGGTCTCAACGC
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