CV884398

Overview
NameCV884398
Unique NameCV884398
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length889
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884398 vs. ExPASy Swiss-Prot
Match: EF1A1_CRIGR (Elongation factor 1-alpha 1 OS=Cricetulus griseus GN=EEF1A1 PE=2 SV=1)

HSP 1 Score: 287.345 bits (734), Expect = 7.649e-77
Identity = 141/178 (79.21%), Postives = 158/178 (88.76%), Query Frame = -3
Query:  354 VETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 887
            VETGVLKPGMVVTF P  +TTEVKSVEMHHEAL EALPGDNVGFNVKNV+VKD++RG VA +SK+DP  EAA FT+QVII+NHPGQI  GYAPVLDCHT+HIA KF+EL  KIDRRSGK+LE  PKFLK+GDA +V M+P KPM VE+FSDYPPLGRFAVRDMRQTVAVGVIK+V+KK
Sbjct:  267 VETGVLKPGMVVTFAPVNVTTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVRRGNVAGDSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKAVDKK 444          
BLAST of CV884398 vs. ExPASy Swiss-Prot
Match: EF1A1_BOVIN (Elongation factor 1-alpha 1 OS=Bos taurus GN=EEF1A1 PE=2 SV=1)

HSP 1 Score: 287.345 bits (734), Expect = 7.649e-77
Identity = 141/178 (79.21%), Postives = 158/178 (88.76%), Query Frame = -3
Query:  354 VETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 887
            VETGVLKPGMVVTF P  +TTEVKSVEMHHEAL EALPGDNVGFNVKNV+VKD++RG VA +SK+DP  EAA FT+QVII+NHPGQI  GYAPVLDCHT+HIA KF+EL  KIDRRSGK+LE  PKFLK+GDA +V M+P KPM VE+FSDYPPLGRFAVRDMRQTVAVGVIK+V+KK
Sbjct:  267 VETGVLKPGMVVTFAPVNVTTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVRRGNVAGDSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKAVDKK 444          
BLAST of CV884398 vs. ExPASy Swiss-Prot
Match: EF1A_EUGGR (Elongation factor 1-alpha OS=Euglena gracilis GN=TEF PE=2 SV=1)

HSP 1 Score: 286.96 bits (733), Expect = 9.990e-77
Identity = 141/182 (77.47%), Postives = 162/182 (89.01%), Query Frame = -3
Query:  342 VETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 887
            VETGVLKPG VVTF P+ LTTEVKSVEMHHEAL EA+PGDNVGFNVKNV+VKD++RG+VASN+K+DPA+EAA+FT+QVII+NHPGQIGNGYAPVLDCHT HIA KF+ + TKIDRRSGKELE EPKF+K+GDA +V M P KPM VE+F+DYPPLG  +  DMRQTVAVGVIKSV KK+ TG
Sbjct:  255 VETGVLKPGDVVTFAPNNLTTEVKSVEMHHEALTEAVPGDNVGFNVKNVSVKDIRRGYVASNAKNDPAKEAADFTAQVIILNHPGQIGNGYAPVLDCHTCHIACKFATIQTKIDRRSGKELEAEPKFIKSGDAAIVLMKPQKPMCVESFTDYPPLG-VSCGDMRQTVAVGVIKSVNKKENTG 435          
BLAST of CV884398 vs. ExPASy Swiss-Prot
Match: EF1A_CAEEL (Elongation factor 1-alpha OS=Caenorhabditis elegans GN=eft-3 PE=2 SV=1)

HSP 1 Score: 285.034 bits (728), Expect = 3.796e-76
Identity = 135/179 (75.42%), Postives = 159/179 (88.83%), Query Frame = -3
Query:  351 VETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKD 887
            VETG++KPGMVVTF P  +TTEVKSVEMHHE+L EA+PGDNVGFNVKNV+VKD++RG V S+SK DPA+EA  F +QVIIMNHPGQI NGY PVLDCHT+HIA KF+EL  K+DRR+GK++E  PKFLK+GDAG+V++IPTKP+ VE+F+DY PLGRFAVRDMRQTVAVGVIKSVEK D
Sbjct:  267 VETGIIKPGMVVTFAPQNVTTEVKSVEMHHESLPEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKEARTFHAQVIIMNHPGQISNGYTPVLDCHTAHIACKFNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYAPLGRFAVRDMRQTVAVGVIKSVEKSD 445          
BLAST of CV884398 vs. ExPASy Swiss-Prot
Match: EF1A_DANRE (Elongation factor 1-alpha OS=Danio rerio GN=eef1a PE=2 SV=1)

HSP 1 Score: 284.648 bits (727), Expect = 4.958e-76
Identity = 139/178 (78.09%), Postives = 157/178 (88.20%), Query Frame = -3
Query:  354 VETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 887
            VETGVLKPGMVVTF P+ +TTEVKSVEMHHE+L EA PGDNVGFNVKNV+VKD++RG VA +SK+DP  EAANF +QVII+NHPGQI  GYAPVLDCHT+HIA KF+EL  KIDRRSGK+LE  PK LK+GDA +V+M+P KPM VE+FS YPPLGRFAVRDMRQTVAVGVIKSVEKK
Sbjct:  267 VETGVLKPGMVVTFAPANVTTEVKSVEMHHESLTEATPGDNVGFNVKNVSVKDIRRGNVAGDSKNDPPMEAANFNAQVIILNHPGQISQGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDNPKALKSGDAAIVEMVPGKPMCVESFSTYPPLGRFAVRDMRQTVAVGVIKSVEKK 444          
BLAST of CV884398 vs. ExPASy Swiss-Prot
Match: EF1AC_PORPU (Elongation factor 1-alpha C OS=Porphyra purpurea GN=TEF-C PE=2 SV=1)

HSP 1 Score: 284.648 bits (727), Expect = 4.958e-76
Identity = 137/182 (75.27%), Postives = 159/182 (87.36%), Query Frame = -3
Query:  342 VETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 887
            VETGV+KPGMVVTF PSGL+TEVKSVEMHHEAL +A PGDNVGFNVKNV+VKDLKRG+V  +SK+DP +  A+F +QVII+NHPG+I  GYAPVLDCHT+HIA KFSEL+ K+DRRSGK+LE  PK +K+GDA MVKM+ +KPM VE F+ YPPLGRFAVRDMRQTVAVGVIKSVEKK+  G
Sbjct:  259 VETGVIKPGMVVTFAPSGLSTEVKSVEMHHEALTQAGPGDNVGFNVKNVSVKDLKRGYVCGDSKNDPPKGCASFNAQVIILNHPGEIHAGYAPVLDCHTAHIACKFSELILKMDRRSGKKLEDSPKMIKSGDAAMVKMVASKPMCVEAFTSYPPLGRFAVRDMRQTVAVGVIKSVEKKEVEG 440          
BLAST of CV884398 vs. ExPASy Swiss-Prot
Match: EF1A2_RHIRA (Elongation factor 1-alpha OS=Rhizomucor racemosus GN=TEF-2 PE=3 SV=1)

HSP 1 Score: 284.648 bits (727), Expect = 4.958e-76
Identity = 134/182 (73.63%), Postives = 160/182 (87.91%), Query Frame = -3
Query:  342 VETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 887
            VETG +K GMVV F P+ +TTEVKSVEMHHE L E LPGDNVGFNVKNV+VKD++RG V S+SK+DPA+E+A+FT+QVII+NHPGQI  GYAPVLDCHT+HIA KFSEL+ KIDRRSGK++E  PKF+K+GD+ +VKM+P+KPM VE ++DYPPLGRFAVRDMRQTVAVGVIK+VEK D  G
Sbjct:  265 VETGTIKAGMVVNFAPAAVTTEVKSVEMHHETLTEGLPGDNVGFNVKNVSVKDIRRGNVCSDSKNDPAKESASFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFSELIEKIDRRSGKKMEDSPKFVKSGDSAIVKMVPSKPMCVEAYTDYPPLGRFAVRDMRQTVAVGVIKAVEKVDKAG 446          
BLAST of CV884398 vs. ExPASy Swiss-Prot
Match: EF1A1_RHIRA (Elongation factor 1-alpha OS=Rhizomucor racemosus GN=TEF-1 PE=3 SV=1)

HSP 1 Score: 284.648 bits (727), Expect = 4.958e-76
Identity = 134/182 (73.63%), Postives = 160/182 (87.91%), Query Frame = -3
Query:  342 VETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 887
            VETG +K GMVV F P+ +TTEVKSVEMHHE L E LPGDNVGFNVKNV+VKD++RG V S+SK+DPA+E+A+FT+QVII+NHPGQI  GYAPVLDCHT+HIA KFSEL+ KIDRRSGK++E  PKF+K+GD+ +VKM+P+KPM VE ++DYPPLGRFAVRDMRQTVAVGVIK+VEK D  G
Sbjct:  265 VETGTIKAGMVVNFAPAAVTTEVKSVEMHHETLTEGLPGDNVGFNVKNVSVKDIRRGNVCSDSKNDPAKESASFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFSELIEKIDRRSGKKMEDSPKFVKSGDSAIVKMVPSKPMCVEAYTDYPPLGRFAVRDMRQTVAVGVIKAVEKVDKAG 446          
BLAST of CV884398 vs. ExPASy Swiss-Prot
Match: EF1A1_HORSE (Elongation factor 1-alpha 1 OS=Equus caballus GN=EEF1A1 PE=2 SV=1)

HSP 1 Score: 284.648 bits (727), Expect = 4.958e-76
Identity = 140/178 (78.65%), Postives = 157/178 (88.20%), Query Frame = -3
Query:  354 VETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 887
            VETGVLKPGMVVTF P  +TTEVKSVEMHHEAL EALPGDNVGFNVKNV+VKD++RG VA +SK+DP  EAA FT+QVII+NHPGQI  GYAPV DCHT+HIA KF+EL  KIDRRSGK+LE  PKFLK+GDA +V M+P KPM VE+FSDYPPLGRFAVRDMRQTVAVGVIK+V+KK
Sbjct:  267 VETGVLKPGMVVTFAPVNVTTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVRRGNVAGDSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVPDCHTAHIACKFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKAVDKK 444          
BLAST of CV884398 vs. ExPASy Swiss-Prot
Match: EF1A_SCHCO (Elongation factor 1-alpha OS=Schizophyllum commune GN=TEF1 PE=3 SV=1)

HSP 1 Score: 284.263 bits (726), Expect = 6.476e-76
Identity = 133/182 (73.08%), Postives = 163/182 (89.56%), Query Frame = -3
Query:  342 VETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 887
            VETG++K GMVVTF PS +TTEVKSVEMHHE L E  PGDNVGFNVKNV+VKD++RG VAS+SK+DPA+EAA+F +QVI++NHPGQIG GYAPVLDCHT+HIA KF+EL+ KIDRR+GK LE  PKF+K+GDA +VK++P+KPM VE++++YPPLGRFAVRDMRQTVAVG+IKSV+K D +G
Sbjct:  265 VETGIIKAGMVVTFAPSNVTTEVKSVEMHHEQLAEGKPGDNVGFNVKNVSVKDIRRGNVASDSKNDPAKEAASFNAQVIVLNHPGQIGAGYAPVLDCHTAHIACKFAELLEKIDRRTGKSLEASPKFVKSGDACIVKLVPSKPMCVESYNEYPPLGRFAVRDMRQTVAVGIIKSVDKTDKSG 446          
The following BLAST results are available for this feature:
BLAST of CV884398 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 178
Match NameE-valueIdentityDescription
EF1A1_CRIGR7.649e-7779.21Elongation factor 1-alpha 1 OS=Cricetulus griseus ... [more]
EF1A1_BOVIN7.649e-7779.21Elongation factor 1-alpha 1 OS=Bos taurus GN=EEF1A... [more]
EF1A_EUGGR9.990e-7777.47Elongation factor 1-alpha OS=Euglena gracilis GN=T... [more]
EF1A_CAEEL3.796e-7675.42Elongation factor 1-alpha OS=Caenorhabditis elegan... [more]
EF1A_DANRE4.958e-7678.09Elongation factor 1-alpha OS=Danio rerio GN=eef1a ... [more]
EF1AC_PORPU4.958e-7675.27Elongation factor 1-alpha C OS=Porphyra purpurea G... [more]
EF1A2_RHIRA4.958e-7673.63Elongation factor 1-alpha OS=Rhizomucor racemosus ... [more]
EF1A1_RHIRA4.958e-7673.63Elongation factor 1-alpha OS=Rhizomucor racemosus ... [more]
EF1A1_HORSE4.958e-7678.65Elongation factor 1-alpha 1 OS=Equus caballus GN=E... [more]
EF1A_SCHCO6.476e-7673.08Elongation factor 1-alpha OS=Schizophyllum commune... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_003B11_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_003_T3_B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884398 ID=CV884398; Name=CV884398; organism=Citrus sinensis; type=EST; length=889bp
TTTTTAATCAAAGAGCTTAAAATGAGCTTCCAAATGTATTAAAACCACCA
ACTTTGACATCCAGCAGCTGGTCTATAAACTTCACAACTCAATTTAGTGC
TATTAACCAAATTCAGAATATAAAAATCCGAACACCCACCACAGCCAGTT
AAGCAGAAAGATAACATCCCAATTGCTCAACAGCAAACTGGTGGAAGCAA
ATAGGGCTGTTTGCAGAAACATTGATGCAAAACAAAAACAGACAAGAAAA
TAAAAAAAGACAGAAAATAAACCCTAACTATTGTAGACAGACCCATAAAA
ATTTCTCATTTCTTCTTGGCTGCGGACTTGGTGACCTTCGCACCTGTGGG
ATCCTTCTTCTCAACACTCTTGATAACACCCACAGCAACAGTCTGACGCA
TGTCCCTAACAGCAAAACGACCAAGGGGTGGGTAATCGGAGAAGGTTTCA
ACAACCATGGGCTTGGTGGGAATCATCTTAACCATTCCGGCGTCTCCATT
CTTCAAGAACTTGGGCTCCTTCTCAAGCTCCTTGCCTGATCGCCTATCAA
TCTTCGTCACGAGCTCAGAAAACTTGACGGCAATGTGGGAGGTGTGGCAG
TCAAGCACTGGGGCATATCCATTTCCAATCTGGCCAGGGTGGTTCATGAT
GATGACCTGTGAGGTGAAGTTGGCAGCTTCCCTGGCCGGATCATCCTTCG
AGTTGGAAGCAACAAAACCACGCTTGAGATCCTTGACAGCAACGTTCTTC
ACGTTGAAACCAACATTGTCACCCGGAAGGGCCTCCTGCAGAGCTTCGTG
GTGCATCTCAACAGACTTAACCTCAGTTGTCAATCCAGAGGGGCCAAATG
TCACCACCATACCAGGCTTGAGGACACCGGTCTCAACGC
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