CV884374

Overview
NameCV884374
Unique NameCV884374
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length869
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884374 vs. ExPASy Swiss-Prot
Match: CATH_HUMAN (Cathepsin H OS=Homo sapiens GN=CTSH PE=1 SV=4)

HSP 1 Score: 70.8626 bits (172), Expect = 1.088e-11
Identity = 39/89 (43.82%), Postives = 49/89 (55.06%), Query Frame = -1
Query:  597 PVSVAIEGGGMAFQLYESGIFTG----RCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASY 851
            PVS A E     F +Y +GI++     +    ++H V AVGYG +NG  YWIVKNSWG  WG  GY  +ER         CG+A  ASY
Sbjct:  248 PVSFAFEVT-QDFMMYRTGIYSSTSCHKTPDKVNHAVLAVGYGEKNGIPYWIVKNSWGPQWGMNGYFLIERG-----KNMCGLAACASY 330          
BLAST of CV884374 vs. ExPASy Swiss-Prot
Match: CYSP_TRYCR (Cruzipain OS=Trypanosoma cruzi PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.855e-11
Identity = 34/86 (39.53%), Postives = 47/86 (54.65%), Query Frame = -1
Query:  600 NQPVSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEAS 857
            N PV+VA++    ++  Y  G+ T      LDHGV  VGY       YWI+KNSW + WGE GYIR+ +      + +C +  EAS
Sbjct:  254 NGPVAVAVDAS--SWMTYTGGVMTSCVSEQLDHGVLLVGYNDSAAVPYWIIKNSWTTQWGEEGYIRIAKG-----SNQCLVKEEAS 332          
BLAST of CV884374 vs. ExPASy Swiss-Prot
Match: TEST2_RAT (Testin-2 OS=Rattus norvegicus GN=Testin PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 2.423e-11
Identity = 40/98 (40.82%), Postives = 58/98 (59.18%), Query Frame = -1
Query:  597 KAVANQ-PVSVAIEGGGMAFQLYESGIF-TGRCG-TSLDHGVTAVGYGTE----NGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASY 869
            KAVA   P+SVA++    +FQ Y SGI+   +C    L+H V  VGYG E    +G  +W+VKNSWG  WG  GY+++ ++     +  CGIA  ++Y
Sbjct:  237 KAVAKVGPISVAVDASHGSFQFYGSGIYYEPQCKRVHLNHAVLVVGYGFEGEESDGNSFWLVKNSWGEEWGMKGYMKLAKD----WSNHCGIATYSTY 330          
BLAST of CV884374 vs. ExPASy Swiss-Prot
Match: CATV_NPVAP (Viral cathepsin OS=Antheraea pernyi nuclear polyhedrosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.423e-11
Identity = 34/82 (41.46%), Postives = 47/82 (57.32%), Query Frame = -1
Query:  606 PVSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAME 851
            P+ VAI+   +    Y+ GI        L+H V  VGYG ENG  +WI+KN+WG+ WGE GY R+++N+       CGI  E
Sbjct:  242 PIPVAIDASDIVG--YKRGIIRYCENHGLNHAVLLVGYGVENGIPFWILKNTWGADWGEQGYFRVQQNI-----NACGIKNE 316          
BLAST of CV884374 vs. ExPASy Swiss-Prot
Match: CATH_BOVIN (Cathepsin H OS=Bos taurus GN=CTSH PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.423e-11
Identity = 41/96 (42.71%), Postives = 53/96 (55.21%), Query Frame = -1
Query:  597 KAVA-NQPVSVAIEGGGMAFQLYESGIFTG----RCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASY 869
            +AVA + PVS A E     F +Y  GI++     +    ++H V AVGYG E G  YWIVKNSWG +WG  GY  +ER         CG+A  AS+
Sbjct:  241 EAVALHNPVSFAFEVTA-DFMMYRKGIYSSTSCHKTPDKVNHAVLAVGYGEEKGIPYWIVKNSWGPNWGMKGYFLIERG-----KNMCGLAACASF 330          
BLAST of CV884374 vs. ExPASy Swiss-Prot
Match: CATV_NPVCF (Viral cathepsin OS=Choristoneura fumiferana nuclear polyhedrosis virus GN=Vcath PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.164e-11
Identity = 33/82 (40.24%), Postives = 46/82 (56.10%), Query Frame = -1
Query:  606 PVSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAME 851
            P+ VAI+   +    Y+ GI        L+H V  VGY  ENG  +WI+KN+WG+ WGE GY R+++N+       CGI  E
Sbjct:  242 PIPVAIDASDIVN--YKRGIMKYCANHGLNHAVLLVGYAVENGVPFWILKNTWGADWGEQGYFRVQQNI-----NACGIQNE 316          
BLAST of CV884374 vs. ExPASy Swiss-Prot
Match: CATV_GVXN (Viral cathepsin OS=Xestia c-nigrum granulosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.133e-11
Identity = 38/81 (46.91%), Postives = 48/81 (59.26%), Query Frame = -1
Query:  615 PVSVAIEGGGMAFQLYESGIFTGRCGTS--LDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGI 851
            PVSVAI+   +    Y+SG+    C     L+HGV  VGYG EN   YW +KNSWGS WGE G+ R++R+V       CGI
Sbjct:  260 PVSVAIDVVDLTN--YKSGV-AKHCSVDHGLNHGVLLVGYGQENDVKYWTLKNSWGSDWGEQGFFRIKRDV-----NSCGI 332          
BLAST of CV884374 vs. ExPASy Swiss-Prot
Match: LMCPA_LEIME (Cysteine proteinase A OS=Leishmania mexicana GN=LMCPA PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.397e-11
Identity = 33/65 (50.77%), Postives = 42/65 (64.62%), Query Frame = -1
Query:  657 PVSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRM 851
            PV+VA++     +QLY  G+ +     SL+HGV  VG+       YWIVKNSWGSSWGE GYIR+
Sbjct:  261 PVAVAVDA--TTWQLYFGGVVSLCLAWSLNHGVLIVGFNKNAKPPYWIVKNSWGSSWGEKGYIRL 323          
BLAST of CV884374 vs. ExPASy Swiss-Prot
Match: CYSP1_LEIPI (Cysteine proteinase 1 OS=Leishmania pifanoi GN=CYS1 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 5.397e-11
Identity = 33/65 (50.77%), Postives = 42/65 (64.62%), Query Frame = -1
Query:  657 PVSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRM 851
            PV+VA++     +QLY  G+ +     SL+HGV  VG+       YWIVKNSWGSSWGE GYIR+
Sbjct:  261 PVAVAVDA--TTWQLYFGGVVSLCLAWSLNHGVLIVGFNKNAKPPYWIVKNSWGSSWGEKGYIRL 323          
BLAST of CV884374 vs. ExPASy Swiss-Prot
Match: CATF_MOUSE (Cathepsin F OS=Mus musculus GN=Ctsf PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.397e-11
Identity = 39/88 (44.32%), Postives = 46/88 (52.27%), Query Frame = -1
Query:  600 PVSVAIEGGGMAFQLYESGI---FTGRCGT-SLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEAS 851
            P+SVAI   GM F  Y  GI   F   C    +DH V  VGYG  +   YW +KNSWGS WGE GY  + R      +G CG+   AS
Sbjct:  377 PISVAINAFGMQF--YRHGIAHPFRPLCSPWFIDHAVLLVGYGNRSNIPYWAIKNSWGSDWGEEGYYYLYRG-----SGACGVNTMAS 457          
The following BLAST results are available for this feature:
BLAST of CV884374 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 116
Match NameE-valueIdentityDescription
CATH_HUMAN1.088e-1143.82Cathepsin H OS=Homo sapiens GN=CTSH PE=1 SV=4[more]
CYSP_TRYCR1.855e-1139.53Cruzipain OS=Trypanosoma cruzi PE=1 SV=1[more]
TEST2_RAT2.423e-1140.82Testin-2 OS=Rattus norvegicus GN=Testin PE=1 SV=2[more]
CATV_NPVAP2.423e-1141.46Viral cathepsin OS=Antheraea pernyi nuclear polyhe... [more]
CATH_BOVIN2.423e-1142.71Cathepsin H OS=Bos taurus GN=CTSH PE=2 SV=1[more]
CATV_NPVCF3.164e-1140.24Viral cathepsin OS=Choristoneura fumiferana nuclea... [more]
CATV_GVXN4.133e-1146.91Viral cathepsin OS=Xestia c-nigrum granulosis viru... [more]
LMCPA_LEIME5.397e-1150.77Cysteine proteinase A OS=Leishmania mexicana GN=LM... [more]
CYSP1_LEIPI5.397e-1150.77Cysteine proteinase 1 OS=Leishmania pifanoi GN=CYS... [more]
CATF_MOUSE5.397e-1144.32Cathepsin F OS=Mus musculus GN=Ctsf PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_003A07_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_003_T3_A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884374 ID=CV884374; Name=CV884374; organism=Citrus sinensis; type=EST; length=869bp
CCTCGTGCCGATAGATAACAACAATTTGTTTGTGCATTGTTCAGATTCAA
CGCAGATAGATAACTTACAACGCTATATACCAAACCAACGTCCGAATAAA
TATTTAACAGACCATCCACCTGCCGGTACATTAACGTTTGGAATGAAATG
CAGTAGAATGAACTAAGGCCGGGGAGAAACTCATTCACAAGCACGAATAT
TTTCATCCTCCCTTCGGCCTTCCACTGCTCTTACAGTGCCAACTATAATT
AAGCACTGCTACTTCCACCTTGATTTCCATGAGCCCAGTAAGGTTTAGCA
GGGGTGCGTCGTAATGCCCTCACTCCCAATGGGTTGTCCTTGCTCATCAA
GCAGGTCCCAGCACGAACATTACAGATGGGATAGTCATGTGGGCAGCAGC
TATAGTGGTCATCACAGCAGGTGGCAGCCTCAAGCGGGCAGCATCCCCAT
GCAAAGCAAGAGTTACCATACTCAAAGACACAGCAGCAAGTGTTGCTCTC
AGGGCAAGAGTAATAATTGTCACACACAGCAGGAGGCTTTGTTGGAGATG
GAGGGGACGGTCCAGGGTTGGGAGGATTTTGGCCTTTCTTTATGGGATAT
GAGGCCTCCATGGCAATTCCACACTTGCCCGTGAGAGTGCCAGCCACGTT
ACGCTCCATCCTAATATAGCCAGCCTCTCCCCAGCTACTGCCCCATGAAT
TCTTCACAATCCAGTAATCAGCTCCATTTTCTGTGCCATATCCAACAGCA
GTAACACCATGGTCCAGAGATGTCCCACATCTTCCCGTAAATATACCCGA
TTCATATAACTGGAATGCCATGCCACCTCCCTCAATGGCAACACTCACGG
GTTGATTTGCAACTGCCTT
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