CV884374

Overview
NameCV884374
Unique NameCV884374
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length869
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884374 vs. ExPASy Swiss-Prot
Match: MEX2_JACME (Chymomexicain OS=Jacaratia mexicana PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.262e-17
Identity = 44/85 (51.76%), Postives = 54/85 (63.53%), Query Frame = -1
Query:  615 KAVANQPVSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGI 869
            + + NQPVSV  E  G AFQLY+ GIF G CG   DH VTA+GYG     D    KNSWG +WGE GYI+++R  +G   G CG+
Sbjct:  124 QGIGNQPVSVLHESKGRAFQLYKGGIFNGPCGYKNDHAVTAIGYGKAQLLD----KNSWGPNWGEKGYIKIKR-ASGKSEGTCGV 203          
BLAST of CV884374 vs. ExPASy Swiss-Prot
Match: CPR2_ARATH (Probable cysteine proteinase At3g43960 OS=Arabidopsis thaliana GN=At3g43960 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 8.597e-17
Identity = 44/93 (47.31%), Postives = 58/93 (62.37%), Query Frame = -1
Query:  597 KAVANQPVSVAIEGGGMAFQLYESGIFTGRCGTSL-DHGVTAVGYGTENG-ADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASY 869
            KAVA QP+SV I    M+   Y+SG++ G C     DH V  VGYGT +   DYW+++NSWG  WGE GY+R++RN     TGKC +A+   Y
Sbjct:  255 KAVAYQPISVMISAANMSD--YKSGVYKGACSNLWGDHNVLIVGYGTSSDEGDYWLIRNSWGPEWGEGGYLRLQRNFHEP-TGKCAVAVAPVY 344          
BLAST of CV884374 vs. ExPASy Swiss-Prot
Match: CATL_DROME (Cathepsin L OS=Drosophila melanogaster GN=Cp1 PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 8.597e-17
Identity = 44/88 (50.00%), Postives = 60/88 (68.18%), Query Frame = -1
Query:  597 PVSVAIEGGGMAFQLYESGIFTG-RCGT-SLDHGVTAVGYGT-ENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASY 851
            PVSVAI+    +FQ Y  G++   +C   +LDHGV  VG+GT E+G DYW+VKNSWG++WG+ G+I+M RN       +CGIA  +SY
Sbjct:  285 PVSVAIDASHESFQFYSEGVYNEPQCDAQNLDHGVLVVGFGTDESGEDYWLVKNSWGTTWGDKGFIKMLRN----KENQCGIASASSY 368          
BLAST of CV884374 vs. ExPASy Swiss-Prot
Match: P34_SOYBN (P34 probable thiol protease OS=Glycine max PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.123e-16
Identity = 46/93 (49.46%), Postives = 58/93 (62.37%), Query Frame = -1
Query:  597 AVANQPVSVAIEGGGMAFQLYESGIFTGRCGTS---LDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASY 866
            A+  QP+SV+I+     F LY  GI+ G   TS   ++H V  VGYG+ +G DYWI KNSWG  WGE GYI ++RN  G L G CG+   ASY
Sbjct:  265 AILEQPISVSIDAKD--FHLYTGGIYDGENCTSPYGINHFVLLVGYGSADGVDYWIAKNSWGFDWGEDGYIWIQRN-TGNLLGVCGMNYFASY 354          
BLAST of CV884374 vs. ExPASy Swiss-Prot
Match: CATS_SAIBB (Cathepsin S OS=Saimiri boliviensis boliviensis GN=CTSS PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.123e-16
Identity = 45/93 (48.39%), Postives = 59/93 (63.44%), Query Frame = -1
Query:  597 KAVANQ-PVSVAIEGGGMAFQLYESGIFTG-RCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASY 869
            +AVAN+ PV V ++    +F LY SG++    C   ++HGV  +GYG  NG +YW+VKNSWGS++GE GYIRM RN        CGIA   SY
Sbjct:  239 EAVANKGPVCVGVDASHPSFFLYRSGVYYDPACTQKVNHGVLVIGYGDLNGKEYWLVKNSWGSNFGEQGYIRMARNKG----NHCGIASYPSY 327          
BLAST of CV884374 vs. ExPASy Swiss-Prot
Match: CATS_HUMAN (Cathepsin S OS=Homo sapiens GN=CTSS PE=1 SV=3)

HSP 1 Score: 87.0409 bits (214), Expect = 1.466e-16
Identity = 46/93 (49.46%), Postives = 60/93 (64.52%), Query Frame = -1
Query:  597 KAVANQ-PVSVAIEGGGMAFQLYESGIF-TGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASY 869
            +AVAN+ PVSV ++    +F LY SG++    C  +++HGV  VGYG  NG +YW+VKNSWG ++GE GYIRM RN        CGIA   SY
Sbjct:  240 EAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKG----NHCGIASFPSY 328          
BLAST of CV884374 vs. ExPASy Swiss-Prot
Match: ORYC_ORYSJ (Oryzain gamma chain OS=Oryza sativa subsp. japonica GN=Os09g0442300 PE=2 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 3.267e-16
Identity = 44/90 (48.89%), Postives = 58/90 (64.44%), Query Frame = -1
Query:  597 QPVSVAIEGGGMAFQLYESGIFTG-RCGTS---LDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASY 854
            +PVSVA +     F++Y+SG++T   CGTS   ++H V AVGYG ENG  YW++KNSWG+ WG+ GY +ME          CGIA  ASY
Sbjct:  275 RPVSVAFQVIN-GFRMYKSGVYTSDHCGTSPMDVNHAVLAVGYGVENGVPYWLIKNSWGADWGDNGYFKMEMG-----KNMCGIATCASY 358          
BLAST of CV884374 vs. ExPASy Swiss-Prot
Match: CATS_MOUSE (Cathepsin S OS=Mus musculus GN=Ctss PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.267e-16
Identity = 45/93 (48.39%), Postives = 60/93 (64.52%), Query Frame = -1
Query:  597 KAVANQ-PVSVAIEGGGMAFQLYESGIFTG-RCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASY 869
            +AVA + PVSV I+    +F  Y+SG++    C  +++HGV  VGYGT +G DYW+VKNSWG ++G+ GYIRM RN        CGIA   SY
Sbjct:  249 EAVATKGPVSVGIDASHSSFFFYKSGVYDDPSCTGNVNHGVLVVGYGTLDGKDYWLVKNSWGLNFGDQGYIRMARN----NKNHCGIASYCSY 337          
BLAST of CV884374 vs. ExPASy Swiss-Prot
Match: CATS_BOVIN (Cathepsin S OS=Bos taurus GN=CTSS PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 4.267e-16
Identity = 45/93 (48.39%), Postives = 60/93 (64.52%), Query Frame = -1
Query:  597 KAVANQ-PVSVAIEGGGMAFQLYESGIFTG-RCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASY 869
            +AVAN+ PVSV I+    +F LY++G++    C  +++HGV  VGYG  +G DYW+VKNSWG  +G+ GYIRM RN        CGIA   SY
Sbjct:  240 EAVANKGPVSVGIDASHSSFFLYKTGVYYDPSCTQNVNHGVLVVGYGNLDGKDYWLVKNSWGLHFGDQGYIRMARNSG----NHCGIANYPSY 328          
BLAST of CV884374 vs. ExPASy Swiss-Prot
Match: CYSP5_DICDI (Cysteine proteinase 5 OS=Dictyostelium discoideum GN=cprE PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 7.278e-16
Identity = 51/111 (45.95%), Postives = 62/111 (55.86%), Query Frame = -1
Query:  597 AVANQPVSVAIEGGGMAFQLYESGIF-TGRCGT-SLDHGVTAVGYGTENGA-------------------DYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASY 866
            AV   PVSVAI+    +FQLY SGI+    C + +LDHGV AVGYG+ +G+                   +YWIVKNSWG+SWG  GYI M RN        CGIA  AS+
Sbjct:  235 AVNVNPVSVAIDASHQSFQLYTSGIYYEPECSSENLDHGVLAVGYGSGSGSSSGQSSGQSSGNLSASSSNEYWIVKNSWGTSWGIEGYILMSRN----RDNNCGIASSASF 341          
The following BLAST results are available for this feature:
BLAST of CV884374 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 116
Match NameE-valueIdentityDescription
MEX2_JACME2.262e-1751.76Chymomexicain OS=Jacaratia mexicana PE=1 SV=1[more]
CPR2_ARATH8.597e-1747.31Probable cysteine proteinase At3g43960 OS=Arabidop... [more]
CATL_DROME8.597e-1750.00Cathepsin L OS=Drosophila melanogaster GN=Cp1 PE=1... [more]
P34_SOYBN1.123e-1649.46P34 probable thiol protease OS=Glycine max PE=1 SV... [more]
CATS_SAIBB1.123e-1648.39Cathepsin S OS=Saimiri boliviensis boliviensis GN=... [more]
CATS_HUMAN1.466e-1649.46Cathepsin S OS=Homo sapiens GN=CTSS PE=1 SV=3[more]
ORYC_ORYSJ3.267e-1648.89Oryzain gamma chain OS=Oryza sativa subsp. japonic... [more]
CATS_MOUSE4.267e-1648.39Cathepsin S OS=Mus musculus GN=Ctss PE=2 SV=1[more]
CATS_BOVIN4.267e-1648.39Cathepsin S OS=Bos taurus GN=CTSS PE=1 SV=2[more]
CYSP5_DICDI7.278e-1645.95Cysteine proteinase 5 OS=Dictyostelium discoideum ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_003A07_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_003_T3_A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884374 ID=CV884374; Name=CV884374; organism=Citrus sinensis; type=EST; length=869bp
CCTCGTGCCGATAGATAACAACAATTTGTTTGTGCATTGTTCAGATTCAA
CGCAGATAGATAACTTACAACGCTATATACCAAACCAACGTCCGAATAAA
TATTTAACAGACCATCCACCTGCCGGTACATTAACGTTTGGAATGAAATG
CAGTAGAATGAACTAAGGCCGGGGAGAAACTCATTCACAAGCACGAATAT
TTTCATCCTCCCTTCGGCCTTCCACTGCTCTTACAGTGCCAACTATAATT
AAGCACTGCTACTTCCACCTTGATTTCCATGAGCCCAGTAAGGTTTAGCA
GGGGTGCGTCGTAATGCCCTCACTCCCAATGGGTTGTCCTTGCTCATCAA
GCAGGTCCCAGCACGAACATTACAGATGGGATAGTCATGTGGGCAGCAGC
TATAGTGGTCATCACAGCAGGTGGCAGCCTCAAGCGGGCAGCATCCCCAT
GCAAAGCAAGAGTTACCATACTCAAAGACACAGCAGCAAGTGTTGCTCTC
AGGGCAAGAGTAATAATTGTCACACACAGCAGGAGGCTTTGTTGGAGATG
GAGGGGACGGTCCAGGGTTGGGAGGATTTTGGCCTTTCTTTATGGGATAT
GAGGCCTCCATGGCAATTCCACACTTGCCCGTGAGAGTGCCAGCCACGTT
ACGCTCCATCCTAATATAGCCAGCCTCTCCCCAGCTACTGCCCCATGAAT
TCTTCACAATCCAGTAATCAGCTCCATTTTCTGTGCCATATCCAACAGCA
GTAACACCATGGTCCAGAGATGTCCCACATCTTCCCGTAAATATACCCGA
TTCATATAACTGGAATGCCATGCCACCTCCCTCAATGGCAACACTCACGG
GTTGATTTGCAACTGCCTT
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