CV884374

Overview
NameCV884374
Unique NameCV884374
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length869
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884374 vs. ExPASy Swiss-Prot
Match: CYSP2_MAIZE (Cysteine proteinase 2 OS=Zea mays GN=CCP2 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 9.505e-16
Identity = 43/90 (47.78%), Postives = 58/90 (64.44%), Query Frame = -1
Query:  597 QPVSVAIEGGGMAFQLYESGIFTG-RCGTS---LDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASY 854
            +PVSVA E     F+LY+SG++T   CGT+   ++H V AVGYG E+G  YW++KNSWG+ WG+ GY +ME          CG+A  ASY
Sbjct:  273 RPVSVAFEVI-TGFRLYKSGVYTSDHCGTTPMDVNHAVLAVGYGVEDGVPYWLIKNSWGADWGDEGYFKMEMG-----KNMCGVATCASY 356          
BLAST of CV884374 vs. ExPASy Swiss-Prot
Match: CATLL_FASHE (Cathepsin L-like proteinase OS=Fasciola hepatica GN=Cat-1 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 9.505e-16
Identity = 45/89 (50.56%), Postives = 56/89 (62.92%), Query Frame = -1
Query:  600 ANQPVSVAIEGGGMAFQLYESGIFTGRCGTSL--DHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEAS 860
            A +P +VA++     F +Y SGI+  +  + L  +H V AVGYGT+ G DYWIVKNSWG+ WGE GYIRM RN        CGIA  AS
Sbjct:  235 ARRPAAVAVDVES-DFMMYRSGIYQSQTCSPLRVNHAVLAVGYGTQGGTDYWIVKNSWGTYWGERGYIRMARNRG----NMCGIASLAS 318          
BLAST of CV884374 vs. ExPASy Swiss-Prot
Match: CATL2_HUMAN (Cathepsin L2 OS=Homo sapiens GN=CTSL2 PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 9.505e-16
Identity = 48/98 (48.98%), Postives = 60/98 (61.22%), Query Frame = -1
Query:  597 KAVANQ-PVSVAIEGGGMAFQLYESGI-FTGRCGT-SLDHGVTAVGYGTE----NGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASY 869
            KAVA   P+SVA++ G  +FQ Y+SGI F   C + +LDHGV  VGYG E    N + YW+VKNSWG  WG  GY++    +A      CGIA  ASY
Sbjct:  238 KAVATVGPISVAMDAGHSSFQFYKSGIYFEPDCSSKNLDHGVLVVGYGFEGANSNNSKYWLVKNSWGPEWGSNGYVK----IAKDKNNHCGIATAASY 331          
BLAST of CV884374 vs. ExPASy Swiss-Prot
Match: CATL1_CANFA (Cathepsin L1 OS=Canis familiaris GN=CTSL1 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.621e-15
Identity = 48/97 (49.48%), Postives = 60/97 (61.86%), Query Frame = -1
Query:  597 KAVANQ-PVSVAIEGGGMAFQLYESGI-FTGRCGTS-LDHGVTAVGYG---TENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASY 869
            KAVA   P+SVAI+ G  +FQ Y+SGI F   C +  LDHGV  VGYG   T++   +WIVKNSWG  WG  GY++M ++        CGIA  ASY
Sbjct:  238 KAVATLGPISVAIDAGHQSFQFYKSGIYFDPDCSSKDLDHGVLVVGYGFEGTDSNNKFWIVKNSWGPEWGWNGYVKMAKD----QNNHCGIATAASY 330          
BLAST of CV884374 vs. ExPASy Swiss-Prot
Match: CATS_RAT (Cathepsin S OS=Rattus norvegicus GN=Ctss PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.118e-15
Identity = 46/94 (48.94%), Postives = 60/94 (63.83%), Query Frame = -1
Query:  597 KAVANQ-PVSVAIEGGG-MAFQLYESGIFTG-RCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASY 869
            +AVA + PVSV I+     +F LY+SG++    C  +++HGV  VGYGT +G DYW+VKNSWG  +G+ GYIRM RN        CGIA   SY
Sbjct:  238 EAVATKGPVSVGIDDASHSSFFLYQSGVYDDPSCTENMNHGVLVVGYGTLDGKDYWLVKNSWGLHFGDQGYIRMARN----NKNHCGIASYCSY 327          
BLAST of CV884374 vs. ExPASy Swiss-Prot
Match: CRUST_PANBO (Crustapain OS=Pandalus borealis GN=Cys PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.766e-15
Identity = 47/94 (50.00%), Postives = 59/94 (62.77%), Query Frame = -1
Query:  597 AVANQ-PVSVAIEGGGMAFQLYESGIF-TGRCGT-SLDHGVTAVGYGTE-NGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASY 866
            AV N+ PVSV I+ G  +F  Y  G++    C +   +H VTAVGYGT+ NG DYWIVKNSWG+ WGE+GYI+M RN        C IA  + Y
Sbjct:  231 AVQNEGPVSVCIDAGQSSFGSYGGGVYYEPNCDSWYANHAVTAVGYGTDANGGDYWIVKNSWGAWWGESGYIKMARN----RDNNCAIATYSVY 320          
BLAST of CV884374 vs. ExPASy Swiss-Prot
Match: ALEU_ARATH (Thiol protease aleurain OS=Arabidopsis thaliana GN=ALEU PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 2.766e-15
Identity = 42/90 (46.67%), Postives = 59/90 (65.56%), Query Frame = -1
Query:  597 QPVSVAIEGGGMAFQLYESGIFT-GRCGTS---LDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASY 854
            +PVS+A E    +F+LY+SG++T   CG++   ++H V AVGYG E+G  YW++KNSWG+ WG+ GY +ME          CGIA  ASY
Sbjct:  271 RPVSIAFEVIH-SFRLYKSGVYTDSHCGSTPMDVNHAVLAVGYGVEDGVPYWLIKNSWGADWGDKGYFKMEMG-----KNMCGIATCASY 354          
BLAST of CV884374 vs. ExPASy Swiss-Prot
Match: CATL1_SHEEP (Cathepsin L1 OS=Ovis aries GN=CTSL PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.612e-15
Identity = 47/95 (49.47%), Postives = 59/95 (62.11%), Query Frame = -1
Query:  597 KAVANQ-PVSVAIEGGGMAFQLYESGIFTGRCGTS--LDHGVTAVGYGTENGAD-YWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASY 869
            KAVA   P+SVAI+ G  +FQ Y+SGI+     +S  LDHGV  VGYG E   + +WIVKNSWG  WG  GY++M ++        CGIA  ASY
Sbjct:  124 KAVATVGPISVAIDAGHSSFQFYKSGIYYDPDCSSKDLDHGVLVVGYGFEGTNNKFWIVKNSWGPEWGNKGYVKMAKD----QNNHCGIATAASY 214          
BLAST of CV884374 vs. ExPASy Swiss-Prot
Match: CATL2_BOVIN (Cathepsin L2 OS=Bos taurus GN=CTSL2 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.717e-15
Identity = 48/98 (48.98%), Postives = 59/98 (60.20%), Query Frame = -1
Query:  597 KAVANQ-PVSVAIEGGGMAFQLYESGIFTGRCGTS--LDHGVTAVGYGTE----NGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASY 869
            KAVA   P+SVAI+ G  +FQ Y+SGI+     +S  LDHGV  VGYG E    N   +WIVKNSWG  WG  GY++M ++        CGIA  ASY
Sbjct:  238 KAVATVGPISVAIDAGHTSFQFYKSGIYYDPDCSSKDLDHGVLVVGYGFEGTDSNNNKFWIVKNSWGPEWGWNGYVKMAKD----QNNHCGIATAASY 331          
BLAST of CV884374 vs. ExPASy Swiss-Prot
Match: CATL1_PIG (Cathepsin L1 OS=Sus scrofa GN=CTSL1 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.717e-15
Identity = 47/98 (47.96%), Postives = 60/98 (61.22%), Query Frame = -1
Query:  597 KAVANQ-PVSVAIEGGGMAFQLYESGIFTGRCGTS--LDHGVTAVGYGTE----NGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASY 869
            KAVA   P+SVAI+ G  +FQ Y+SGI+     +S  LDHGV  VGYG E    N + +WIVKNSWG  WG  GY++M ++        CGI+  ASY
Sbjct:  238 KAVATVGPISVAIDAGHSSFQFYKSGIYYDPDCSSKDLDHGVLVVGYGFEGTDSNSSKFWIVKNSWGPEWGWNGYVKMAKD----QNNHCGISTAASY 331          
The following BLAST results are available for this feature:
BLAST of CV884374 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 116
Match NameE-valueIdentityDescription
CYSP2_MAIZE9.505e-1647.78Cysteine proteinase 2 OS=Zea mays GN=CCP2 PE=2 SV=... [more]
CATLL_FASHE9.505e-1650.56Cathepsin L-like proteinase OS=Fasciola hepatica G... [more]
CATL2_HUMAN9.505e-1648.98Cathepsin L2 OS=Homo sapiens GN=CTSL2 PE=1 SV=2[more]
CATL1_CANFA1.621e-1549.48Cathepsin L1 OS=Canis familiaris GN=CTSL1 PE=2 SV=... [more]
CATS_RAT2.118e-1548.94Cathepsin S OS=Rattus norvegicus GN=Ctss PE=2 SV=1[more]
CRUST_PANBO2.766e-1550.00Crustapain OS=Pandalus borealis GN=Cys PE=1 SV=1[more]
ALEU_ARATH2.766e-1546.67Thiol protease aleurain OS=Arabidopsis thaliana GN... [more]
CATL1_SHEEP3.612e-1549.47Cathepsin L1 OS=Ovis aries GN=CTSL PE=1 SV=1[more]
CATL2_BOVIN4.717e-1548.98Cathepsin L2 OS=Bos taurus GN=CTSL2 PE=2 SV=1[more]
CATL1_PIG4.717e-1547.96Cathepsin L1 OS=Sus scrofa GN=CTSL1 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_003A07_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_003_T3_A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884374 ID=CV884374; Name=CV884374; organism=Citrus sinensis; type=EST; length=869bp
CCTCGTGCCGATAGATAACAACAATTTGTTTGTGCATTGTTCAGATTCAA
CGCAGATAGATAACTTACAACGCTATATACCAAACCAACGTCCGAATAAA
TATTTAACAGACCATCCACCTGCCGGTACATTAACGTTTGGAATGAAATG
CAGTAGAATGAACTAAGGCCGGGGAGAAACTCATTCACAAGCACGAATAT
TTTCATCCTCCCTTCGGCCTTCCACTGCTCTTACAGTGCCAACTATAATT
AAGCACTGCTACTTCCACCTTGATTTCCATGAGCCCAGTAAGGTTTAGCA
GGGGTGCGTCGTAATGCCCTCACTCCCAATGGGTTGTCCTTGCTCATCAA
GCAGGTCCCAGCACGAACATTACAGATGGGATAGTCATGTGGGCAGCAGC
TATAGTGGTCATCACAGCAGGTGGCAGCCTCAAGCGGGCAGCATCCCCAT
GCAAAGCAAGAGTTACCATACTCAAAGACACAGCAGCAAGTGTTGCTCTC
AGGGCAAGAGTAATAATTGTCACACACAGCAGGAGGCTTTGTTGGAGATG
GAGGGGACGGTCCAGGGTTGGGAGGATTTTGGCCTTTCTTTATGGGATAT
GAGGCCTCCATGGCAATTCCACACTTGCCCGTGAGAGTGCCAGCCACGTT
ACGCTCCATCCTAATATAGCCAGCCTCTCCCCAGCTACTGCCCCATGAAT
TCTTCACAATCCAGTAATCAGCTCCATTTTCTGTGCCATATCCAACAGCA
GTAACACCATGGTCCAGAGATGTCCCACATCTTCCCGTAAATATACCCGA
TTCATATAACTGGAATGCCATGCCACCTCCCTCAATGGCAACACTCACGG
GTTGATTTGCAACTGCCTT
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