EY665267

Overview
NameEY665267
Unique NameEY665267
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1077
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665267 vs. ExPASy Swiss-Prot
Match: GBRL1_MOUSE (Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Mus musculus GN=Gabarapl1 PE=2 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 1.067e-25
Identity = 53/112 (47.32%), Postives = 77/112 (68.75%), Query Frame = 3
Query:   78 FKDEFTFEQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPHTATLLDSVYESFKDEDGFLYMCYSSEKTFG 413
            +K++  FE R +E  +I  KYPDRVPVI E+  KA +PD++K+K+LVP D++VGQF  ++  R+HL P  ALF FV +T+P T+  +  +YE   +ED FLY+ YS E  +G
Sbjct:    5 YKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 116          
BLAST of EY665267 vs. ExPASy Swiss-Prot
Match: GBRL1_HUMAN (Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Homo sapiens GN=GABARAPL1 PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 1.067e-25
Identity = 53/112 (47.32%), Postives = 77/112 (68.75%), Query Frame = 3
Query:   78 FKDEFTFEQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPHTATLLDSVYESFKDEDGFLYMCYSSEKTFG 413
            +K++  FE R +E  +I  KYPDRVPVI E+  KA +PD++K+K+LVP D++VGQF  ++  R+HL P  ALF FV +T+P T+  +  +YE   +ED FLY+ YS E  +G
Sbjct:    5 YKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 116          
BLAST of EY665267 vs. ExPASy Swiss-Prot
Match: GBRL1_CAVPO (Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Cavia porcellus GN=GABARAPL1 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 1.067e-25
Identity = 53/112 (47.32%), Postives = 77/112 (68.75%), Query Frame = 3
Query:   78 FKDEFTFEQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPHTATLLDSVYESFKDEDGFLYMCYSSEKTFG 413
            +K++  FE R +E  +I  KYPDRVPVI E+  KA +PD++K+K+LVP D++VGQF  ++  R+HL P  ALF FV +T+P T+  +  +YE   +ED FLY+ YS E  +G
Sbjct:    5 YKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 116          
BLAST of EY665267 vs. ExPASy Swiss-Prot
Match: GBRL1_BOVIN (Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Bos taurus GN=GABARAPL1 PE=3 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 1.067e-25
Identity = 53/112 (47.32%), Postives = 77/112 (68.75%), Query Frame = 3
Query:   78 FKDEFTFEQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPHTATLLDSVYESFKDEDGFLYMCYSSEKTFG 413
            +K++  FE R +E  +I  KYPDRVPVI E+  KA +PD++K+K+LVP D++VGQF  ++  R+HL P  ALF FV +T+P T+  +  +YE   +ED FLY+ YS E  +G
Sbjct:    5 YKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 116          
BLAST of EY665267 vs. ExPASy Swiss-Prot
Match: LGG1_CAEEL (Protein lgg-1 OS=Caenorhabditis elegans GN=lgg-1 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 5.855e-24
Identity = 51/113 (45.13%), Postives = 75/113 (66.37%), Query Frame = 3
Query:   75 SFKDEFTFEQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPHTATLLDSVYESFKDEDGFLYMCYSSEKTFG 413
            ++K+E  FE+R  E  +I  KYPDR+PVI E+  K+ L D++KKK+LVP D++VGQF  ++  R+ L P  ALF FV + +P T T +  +Y+   +ED FLY+ YS E  +G
Sbjct:    4 AYKEENNFEKRRAEGDKIRRKYPDRIPVIVEKAPKSKLHDLDKKKYLVPSDLTVGQFYFLIRKRIQLRPEDALFFFVNNVIPQTMTTMGQLYQDHHEEDLFLYIAYSDESVYG 116          
BLAST of EY665267 vs. ExPASy Swiss-Prot
Match: GBRL3_HUMAN (Gamma-aminobutyric acid receptor-associated protein-like 3 OS=Homo sapiens GN=GABARAPL3 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 5.855e-24
Identity = 50/112 (44.64%), Postives = 76/112 (67.86%), Query Frame = 3
Query:   78 FKDEFTFEQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPHTATLLDSVYESFKDEDGFLYMCYSSEKTFG 413
            +K+   FE R +E  +I  KYPDRVP+I E+  KA +PD++++K+LVP D++ GQF  ++  R+HL P  ALF FV +T+P T+  +  +YE   +ED FLY+ YS+E  +G
Sbjct:    5 YKEVHPFEYRKKEGEKIRKKYPDRVPLIVEKAPKARVPDLDRRKYLVPSDLTDGQFYLLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDSHEEDDFLYVAYSNESVYG 116          
BLAST of EY665267 vs. ExPASy Swiss-Prot
Match: GBRAP_RAT (Gamma-aminobutyric acid receptor-associated protein OS=Rattus norvegicus GN=Gabarap PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 5.855e-24
Identity = 51/112 (45.54%), Postives = 74/112 (66.07%), Query Frame = 3
Query:   78 FKDEFTFEQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPHTATLLDSVYESFKDEDGFLYMCYSSEKTFG 413
            +K+E  FE+R  E  +I  KYPDRVPVI E+  KA + D++KKK+LVP D++VGQF  ++  R+HL    ALF FV + +P T+  +  +Y+   +ED FLY+ YS E  +G
Sbjct:    5 YKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYG 116          
BLAST of EY665267 vs. ExPASy Swiss-Prot
Match: GBRAP_RABIT (Gamma-aminobutyric acid receptor-associated protein OS=Oryctolagus cuniculus GN=GABARAP PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 5.855e-24
Identity = 51/112 (45.54%), Postives = 74/112 (66.07%), Query Frame = 3
Query:   78 FKDEFTFEQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPHTATLLDSVYESFKDEDGFLYMCYSSEKTFG 413
            +K+E  FE+R  E  +I  KYPDRVPVI E+  KA + D++KKK+LVP D++VGQF  ++  R+HL    ALF FV + +P T+  +  +Y+   +ED FLY+ YS E  +G
Sbjct:    5 YKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYG 116          
BLAST of EY665267 vs. ExPASy Swiss-Prot
Match: GBRAP_MOUSE (Gamma-aminobutyric acid receptor-associated protein OS=Mus musculus GN=Gabarap PE=1 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 5.855e-24
Identity = 51/112 (45.54%), Postives = 74/112 (66.07%), Query Frame = 3
Query:   78 FKDEFTFEQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPHTATLLDSVYESFKDEDGFLYMCYSSEKTFG 413
            +K+E  FE+R  E  +I  KYPDRVPVI E+  KA + D++KKK+LVP D++VGQF  ++  R+HL    ALF FV + +P T+  +  +Y+   +ED FLY+ YS E  +G
Sbjct:    5 YKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYG 116          
BLAST of EY665267 vs. ExPASy Swiss-Prot
Match: GBRAP_HUMAN (Gamma-aminobutyric acid receptor-associated protein OS=Homo sapiens GN=GABARAP PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 5.855e-24
Identity = 51/112 (45.54%), Postives = 74/112 (66.07%), Query Frame = 3
Query:   78 FKDEFTFEQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPHTATLLDSVYESFKDEDGFLYMCYSSEKTFG 413
            +K+E  FE+R  E  +I  KYPDRVPVI E+  KA + D++KKK+LVP D++VGQF  ++  R+HL    ALF FV + +P T+  +  +Y+   +ED FLY+ YS E  +G
Sbjct:    5 YKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYG 116          
The following BLAST results are available for this feature:
BLAST of EY665267 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
GBRL1_MOUSE1.067e-2547.32Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL1_HUMAN1.067e-2547.32Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL1_CAVPO1.067e-2547.32Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL1_BOVIN1.067e-2547.32Gamma-aminobutyric acid receptor-associated protei... [more]
LGG1_CAEEL5.855e-2445.13Protein lgg-1 OS=Caenorhabditis elegans GN=lgg-1 P... [more]
GBRL3_HUMAN5.855e-2444.64Gamma-aminobutyric acid receptor-associated protei... [more]
GBRAP_RAT5.855e-2445.54Gamma-aminobutyric acid receptor-associated protei... [more]
GBRAP_RABIT5.855e-2445.54Gamma-aminobutyric acid receptor-associated protei... [more]
GBRAP_MOUSE5.855e-2445.54Gamma-aminobutyric acid receptor-associated protei... [more]
GBRAP_HUMAN5.855e-2445.54Gamma-aminobutyric acid receptor-associated protei... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-083-H12-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665267 ID=EY665267; Name=EY665267; organism=Citrus sinensis; type=EST; length=1077bp
ATTTCCCCGGGGTTCGACCCACAGCGTCCGCTTTCCTTGAGAATTGAGAC
GATACCGAGATGGGAAAGATGCAATCTTTCAAGGACGAGTTCACATTCGA
GCAAAGACTTGAAGAATCGCGCGAAATCATTGCGAAATACCCCGATCGAG
TCCCCGTAATTGCGGAAAGATATTCAAAAGCTGACCTTCCTGATATGGAA
AAGAAAAAATTTCTGGTTCCTCGGGACATGTCTGTTGGGCAATTTATTCA
CATTTTAAGCAGCAGGCTTCACCTGACCCCTGGAAAAGCTCTCTTTGTAT
TTGTGAAAGATACTTTACCGCATACAGCGACTTTATTGGACTCAGTCTAT
GAATCCTTCAAGGATGAGGATGGATTCCTGTATATGTGCTACAGCAGTGA
GAAAACCTTTGGTTATGATAAAATTCAGACTTGTTAATACTTGAACTTTG
TTCATGGCTGGTGTGTACCTGGGCTTACATGCCATTCCTTGTTGTGAATG
GATGTATAAAAACCATCAGGGGCATTGATGTTGAATATACTGGCTAAGTA
TATCCGGCAAAGTGGTATACATCAAAAATGTTCCTGGTGGGAAATACTTT
AAGATTCCTTCATCCTGCTTGTATTTTCAAAAAAATAAAAAAAAAAAGGG
GGGCTAGCATAGGAATCCAATTATTATGAGCTGGCGAGGAAAATATAATT
CCTTTAATATGGTCAATTATATTTCATTTACAGTAAGAAGTTAAACAACC
GGAAGGGGGAAGACCAAGATATACACAATGAATATACATGAAACTCCCCC
CCTCTCATGANCNAAAAACNAAAAACCACACACAAACCCTATCAAATTTC
TTCTTTCTTATATCATATTTTTTCTTATTCTAAATTATATATTAATTATT
ACTTAACCCTCTCTTCTACTTAATAATTCCTCATACATCATTTCTTTACC
TCCCTACCTTTCATAATCATAAAAATAATTAATTACAACATAATAATATT
ATAAAATAACCAATTATATCAATAATTATAATAACATAAAAAAAAATTAA
TATCAAATCAACTACAAAATCAATATA
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