EY665267

Overview
NameEY665267
Unique NameEY665267
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1077
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665267 vs. ExPASy Swiss-Prot
Match: MLP3A_HUMAN (Microtubule-associated proteins 1A/1B light chain 3A OS=Homo sapiens GN=MAP1LC3A PE=1 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 3.676e-18
Identity = 46/115 (40.00%), Postives = 74/115 (64.35%), Query Frame = 3
Query:   78 FKDEFTFEQRLEESREIIAKYPDRVPVIAERYS-KADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKD-TLPHTATLLDSVYESFKDEDGFLYMCYSSEKTFGY 416
            FK   +F  R +E ++I  ++P ++PVI ERY  +  LP ++K KFLVP  +++ + + I+  RL L P +A F+ V   ++   +T +  +YE  KDEDGFLYM Y+S++TFG+
Sbjct:    7 FKQRRSFADRCKEVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFGF 121          
BLAST of EY665267 vs. ExPASy Swiss-Prot
Match: MLP3C_HUMAN (Microtubule-associated proteins 1A/1B light chain 3C OS=Homo sapiens GN=MAP1LC3C PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 8.189e-18
Identity = 45/117 (38.46%), Postives = 77/117 (65.81%), Query Frame = 3
Query:   69 MQSFKDEFTFEQRLEESREIIAKYPDRVPVIAERYSKAD-LPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKD-TLPHTATLLDSVYESFKDEDGFLYMCYSSEKTFG 413
            ++ FK   +   R EE   I AK+P+++PV+ ERY +   LP ++K KFLVP+++++ QF+ I+ SR+ L   +A ++ V + +L   +  +  +Y  +KDEDGF+YM Y+S++TFG
Sbjct:   10 VRPFKQRKSLAIRQEEVAGIRAKFPNKIPVVVERYPRETFLPPLDKTKFLVPQELTMTQFLSIIRSRMVLRATEAFYLLVNNKSLVSMSATMAEIYRDYKDEDGFVYMTYASQETFG 126          
BLAST of EY665267 vs. ExPASy Swiss-Prot
Match: ATG8E_ORYSJ (Putative autophagy-related protein 8E OS=Oryza sativa subsp. japonica GN=ATG8E PE=3 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 6.933e-17
Identity = 46/84 (54.76%), Postives = 58/84 (69.05%), Query Frame = 3
Query:  165 ERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPHTATLLDSVYESFKDE-DGFLYMCYSSEKTFG 413
            +++S+++LP+MEK+K                   LHL PG ALFVFV +TLP TA L+ SVYES+KDE DGFLY+CYSSEKTFG
Sbjct:   23 DKFSRSNLPEMEKRK-------------------LHLPPGTALFVFVNNTLPQTAQLMGSVYESYKDEGDGFLYLCYSSEKTFG 87          
BLAST of EY665267 vs. ExPASy Swiss-Prot
Match: LGG2_CAEEL (Protein lgg-2 OS=Caenorhabditis elegans GN=lgg-2 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 3.804e-15
Identity = 43/119 (36.13%), Postives = 74/119 (62.18%), Query Frame = 3
Query:   63 GKMQSFKDEFTFEQRLEESREIIAKYPDRVPVIAERY-SKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKD-TLPHTATLLDSVYESFKDEDGFLYMCYSSEKTFG 413
            G + SFK+   F +R ++  EI ++ P++VPVI ER+  +  LP M++ KFLVP  ++V + + I+  RL L P +A F+ V + ++   +  + ++Y   +D DGF+YM Y+S+  FG
Sbjct:   12 GIVPSFKERRPFHERQKDVEEIRSQQPNKVPVIIERFDGERSLPLMDRCKFLVPEHITVAELMSIVRRRLQLHPQQAFFLLVNERSMVSNSMSMSNLYSQERDPDGFVYMVYTSQPAFG 130          
The following BLAST results are available for this feature:
BLAST of EY665267 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
MLP3A_HUMAN3.676e-1840.00Microtubule-associated proteins 1A/1B light chain ... [more]
MLP3C_HUMAN8.189e-1838.46Microtubule-associated proteins 1A/1B light chain ... [more]
ATG8E_ORYSJ6.933e-1754.76Putative autophagy-related protein 8E OS=Oryza sat... [more]
LGG2_CAEEL3.804e-1536.13Protein lgg-2 OS=Caenorhabditis elegans GN=lgg-2 P... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-083-H12-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665267 ID=EY665267; Name=EY665267; organism=Citrus sinensis; type=EST; length=1077bp
ATTTCCCCGGGGTTCGACCCACAGCGTCCGCTTTCCTTGAGAATTGAGAC
GATACCGAGATGGGAAAGATGCAATCTTTCAAGGACGAGTTCACATTCGA
GCAAAGACTTGAAGAATCGCGCGAAATCATTGCGAAATACCCCGATCGAG
TCCCCGTAATTGCGGAAAGATATTCAAAAGCTGACCTTCCTGATATGGAA
AAGAAAAAATTTCTGGTTCCTCGGGACATGTCTGTTGGGCAATTTATTCA
CATTTTAAGCAGCAGGCTTCACCTGACCCCTGGAAAAGCTCTCTTTGTAT
TTGTGAAAGATACTTTACCGCATACAGCGACTTTATTGGACTCAGTCTAT
GAATCCTTCAAGGATGAGGATGGATTCCTGTATATGTGCTACAGCAGTGA
GAAAACCTTTGGTTATGATAAAATTCAGACTTGTTAATACTTGAACTTTG
TTCATGGCTGGTGTGTACCTGGGCTTACATGCCATTCCTTGTTGTGAATG
GATGTATAAAAACCATCAGGGGCATTGATGTTGAATATACTGGCTAAGTA
TATCCGGCAAAGTGGTATACATCAAAAATGTTCCTGGTGGGAAATACTTT
AAGATTCCTTCATCCTGCTTGTATTTTCAAAAAAATAAAAAAAAAAAGGG
GGGCTAGCATAGGAATCCAATTATTATGAGCTGGCGAGGAAAATATAATT
CCTTTAATATGGTCAATTATATTTCATTTACAGTAAGAAGTTAAACAACC
GGAAGGGGGAAGACCAAGATATACACAATGAATATACATGAAACTCCCCC
CCTCTCATGANCNAAAAACNAAAAACCACACACAAACCCTATCAAATTTC
TTCTTTCTTATATCATATTTTTTCTTATTCTAAATTATATATTAATTATT
ACTTAACCCTCTCTTCTACTTAATAATTCCTCATACATCATTTCTTTACC
TCCCTACCTTTCATAATCATAAAAATAATTAATTACAACATAATAATATT
ATAAAATAACCAATTATATCAATAATTATAATAACATAAAAAAAAATTAA
TATCAAATCAACTACAAAATCAATATA
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