CV884361

Overview
NameCV884361
Unique NameCV884361
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length850
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2636 contig Csv1_Contig2636:10..859. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884361 vs. ExPASy Swiss-Prot
Match: RS4_NATPD (30S ribosomal protein S4P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps4p PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.564e-18
Identity = 57/155 (36.77%), Postives = 83/155 (53.55%), Query Frame = -3
Query:  303 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFE-GEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 764
            K ++ P  P++ ER+  E  L+  YGL  K ELWR Q  L   R  AR L+   + +     E G   L R+ R G L++ ++ LD +L+L V + LERRLQT+ ++ G+  +   AR  I   H+ V    V+ PS+ V V  +  IEF  TSP
Sbjct:    8 KFYETPNHPFQGERIAEEGDLLSRYGLVNKEELWRAQSELRDYRREARRLIGEAQGDTVAAAEAGSEFLARLKRIGVLDD-EDSLDDILSLDVTDILERRLQTVAYRKGLGNTPQQARQFIAHGHVTVNGARVSAPSYKVDVAEEGEIEFDETSP 161          
BLAST of CV884361 vs. ExPASy Swiss-Prot
Match: RS4_UNCMA (30S ribosomal protein S4P OS=Uncultured methanogenic archaeon RC-I GN=rps4p PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.349e-18
Identity = 51/159 (32.08%), Postives = 90/159 (56.60%), Query Frame = -3
Query:  303 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDE-----KNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 764
            K +  P  P++K R+D E  LV +YGLR K+ +W+    L + R+ AR LL +       ++   I + + +++++   G L+E   KL+ VLAL V++ +ERRLQT++++ G A SI  AR  I   HI +  + + +P ++V    +  + + + SP
Sbjct:    9 KLYDTPNHPWQKARIDEETSLVKKYGLRNKKSVWKHASDLRKYRSNARALLGVMSAGNLPEDSHYIRDAQNIVKKLQTLGILKEDA-KLEDVLALKVDDIMERRLQTIIYRKGFANSIKQARQFIVHGHISLNGRKITVPGYLVLKSEEDMLSYYVGSP 166          
BLAST of CV884361 vs. ExPASy Swiss-Prot
Match: RS4_METST (30S ribosomal protein S4P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps4p PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 9.744e-18
Identity = 51/149 (34.23%), Postives = 85/149 (57.05%), Query Frame = -3
Query:  318 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEF 764
            K +  P  P+  +R+  E RL  +YGL+ K+E+W+ +  + R R  AR +L +D     R  + + LL  + R GF+  +  KL+ VL L VE+ L RRLQ+LVFK G++ +   AR+ +   HI +  + +N P  +V    +++I+F
Sbjct:    9 KQYDTPSHPWNADRIKEENRLANKYGLKNKKEIWKAESRVKRYRRDARIILGMDIDE--RADKEKELLDHLVRAGFISPNA-KLEEVLDLNVEDILRRRLQSLVFKRGLSHTAKEARLFVVHGHITLNGKKINAPGHLVEKADEENIDF 154          
BLAST of CV884361 vs. ExPASy Swiss-Prot
Match: RS4_METS3 (30S ribosomal protein S4P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rps4p PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 9.744e-18
Identity = 57/158 (36.08%), Postives = 85/158 (53.80%), Query Frame = -3
Query:  303 RNYGKTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 776
            R   K +  P  P+  ER+  E +L+ +YGL+ K+E+W+    + R    AR LL  D    +   E   LL  + R G L E    L+ VL LTVE+ L RRLQT+V+K G+A++   AR+ +   HI +  + +N PS+VV    +  I F  +SP
Sbjct:    5 RKSRKKYNTPPHPWNAERIKNENKLMTKYGLKNKKEIWKADTLVRRYSREARYLLGFDMDQMQD--EKLELLGHLARTGVLPEGA-ALEEVLNLTVEDILRRRLQTIVYKKGLARTPKEARMFVVHGHITLNGKKINSPSYVVLKGQEDEIGFYPSSP 159          
The following BLAST results are available for this feature:
BLAST of CV884361 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
RS4_NATPD2.564e-1836.7730S ribosomal protein S4P OS=Natronomonas pharaoni... [more]
RS4_UNCMA3.349e-1832.0830S ribosomal protein S4P OS=Uncultured methanogen... [more]
RS4_METST9.744e-1834.2330S ribosomal protein S4P OS=Methanosphaera stadtm... [more]
RS4_METS39.744e-1836.0830S ribosomal protein S4P OS=Methanobrevibacter sm... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_002H08_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_002_T7_H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884361 ID=CV884361; Name=CV884361; organism=Citrus sinensis; type=EST; length=850bp
CTTAAGGATCAAAGAGTACATCCCAAAAAACAAAAACAATTCTCTCAATG
AGTAGTCTGTAAAGCACAAAGCAAGCAAAACCTCCTATTATAGGAAGAAA
ATTAGCAAAAACATAAAACTTAAGAGAAGATAAGTCGACTTGCAAAGTTC
AGCCAGAGTTCCTACTGTAACCATAAAAAAACTATCTGCTCACACAAGGT
AATTTATTCTTCATCCTCTTCATCTCCATCTCCACCTGCGGCCTTCTTGG
CAGCAGCCTTAATGTTCCTTCTCTTCACTCTTCCGGGGCGCCCGCCTCCA
AATGGACTTGTGAGTGAGAATTCAATGTGCTTCTGGGAATCAACCCTCAC
TACAAATGAGGGAATGTTGACAAGCTGCCTTCCAACCCTAATGTGCCTCT
GCCTGATGAGCACTCGAGCATGGTGAATTGACTTAGCCATGCCACTCTTG
AACACAAGGGTCTGAAGACGACGCTCAAGAAAGTTCTCCACAGTGAGGGC
CAACACATAATCAAGCTTGTTCTGGCTCTCTTCCAAGAAGCCATACCTGT
GCATCCTCCTGAGAAGGGCCTCACCCTCAAAAATACGTCGTGGGTTCTTC
TCATCGAGAGTGAGAAGATCCCTCGCAGCATTTCGGATGCGGCTCAGTGC
GTATTGAACCCTCCAGAGTTCCCTCTTGCAGCGAAGCCCATACTCTCCCA
CAAGTCTCAACTCAGCATCCAATCGCTCCTTCTCATAGGGACGTCTTGGC
TTCTTGAAGGTTTTCCCATAGTTGCGGTAGAATGAAACGTGCACCATCTT
TGCGCGCCGCTGGTGCTACCCTCACTCTCTCCCCCTGTGCGATCTTTCCT
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