CV884357

Overview
NameCV884357
Unique NameCV884357
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length781
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3187 contig Csv1_Contig3187:110..890. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884357 vs. ExPASy Swiss-Prot
Match: UBC34_ARATH (Ubiquitin carrier protein E2 34 OS=Arabidopsis thaliana GN=UBC34 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.551e-11
Identity = 37/119 (31.09%), Postives = 65/119 (54.62%), Query Frame = -3
Query:  321 KRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPN--IYADGSICL---DILQNQWSPIYDVAAILTSIQSLLCDPNPNS 662
            KRL ++++ L ++P + +   P  N+I+ W+ V+ G + TP+ GG +   ++F  +YP KPP +     M  PN        ICL   D     W+P++ V++ILT + S + D +P +
Sbjct:    8 KRLQKEYRALCKEPVSHVVARPSPNDILEWHYVLEGSEGTPFAGGFYYGKIKFPPEYPYKPPGI----TMTTPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSPTT 122          
BLAST of CV884357 vs. ExPASy Swiss-Prot
Match: BIRC6_HUMAN (Baculoviral IAP repeat-containing protein 6 OS=Homo sapiens GN=BIRC6 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.025e-11
Identity = 47/163 (28.83%), Postives = 76/163 (46.63%), Query Frame = -3
Query:  252 STPARKRLMRDFKRLQQDPPAGISGAP----QDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFV-----SRMFHPNIYADGSICLDIL-------QNQWSP-IYDVAAILTSIQSLL--CDPNPNSPA--NSEAARMFSENKREYNRRVRE 677
            S    +RL ++   L    P   S +      +  + +   +I GP DTP+  G F+  + F +DYP+ PP V        S  F+PN+Y DG +CL IL       + +W+P       +L S+QSL+   +P  N P    S      +++ REY+  +R+
Sbjct: 4543 SAARARRLAQEAVTLSTSLPLSSSSSVFVRCDEERLDIMKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHSVRFNPNLYNDGKVCLSILNTWHGRPEEKWNPQTSSFLQVLVSVQSLILVAEPYFNEPGYERSRGTPSGTQSSREYDGNIRQ 4705          
BLAST of CV884357 vs. ExPASy Swiss-Prot
Match: UBC26_ARATH (Probable ubiquitin carrier protein E2 26 OS=Arabidopsis thaliana GN=UBC26 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 3.454e-11
Identity = 46/148 (31.08%), Postives = 75/148 (50.68%), Query Frame = -3
Query:  282 KRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVS--RMFHPNIYADGSICLDIL-------QNQWSPIYD-VAAILTSIQSLLCDPNP--NSPANSEAA---------RMFSEN 662
            K++  D+K L+ D P  IS    ++ + L  AVI G + TP+  G F   +QF + YP+ PP V + S     +PN+Y  G +CL +L       + +W P    +  +L SIQ+L+ +  P  N P   ++A         +++SEN
Sbjct:  274 KKVQADWKILENDLPEAISVRACESRMDLLRAVIIGAEGTPYHDGLFFFDIQFPDTYPSVPPNVHYHSGGLRINPNLYNCGKVCLSLLGTWAGSAREKWLPNESTMLQLLVSIQALILNEKPYFNEPGYVQSAGTASGESKSKVYSEN 421          
BLAST of CV884357 vs. ExPASy Swiss-Prot
Match: UBE2F_XENTR (NEDD8-conjugating enzyme UBE2F OS=Xenopus tropicalis GN=ube2f PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.892e-11
Identity = 39/146 (26.71%), Postives = 73/146 (50.00%), Query Frame = -3
Query:  240 LMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQ------WSPIYDVAAILTSIQSLLCD-PNPNSPANSEAARMFSENKREYNRRVREIVEQ 656
            L+++   L+ + P        D N + +  +   PD++ + GG F+  ++  + Y   PP V+ ++R++HPNI   G ICL +L+        W+P   +  ++  + SL  D  N + P N EAA     +K EY  +V + +++
Sbjct:   37 LVKEVAELEANLPCTCKVNFPDPNKLHYFHLTVSPDESYYQGGRFQFEIEVPDAYNMVPPKVKCLTRIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKDEYRNKVEDYIKR 182          
BLAST of CV884357 vs. ExPASy Swiss-Prot
Match: UBE2F_XENLA (NEDD8-conjugating enzyme UBE2F OS=Xenopus laevis GN=ube2f PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.892e-11
Identity = 39/146 (26.71%), Postives = 73/146 (50.00%), Query Frame = -3
Query:  240 LMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQ------WSPIYDVAAILTSIQSLLCD-PNPNSPANSEAARMFSENKREYNRRVREIVEQ 656
            L+++   L+ + P        D N + +  +   PD++ + GG F+  ++  + Y   PP V+ ++R++HPNI   G ICL +L+        W+P   +  ++  + SL  D  N + P N EAA     +K EY  +V + +++
Sbjct:   37 LVKEVAELEANLPCTCKVNFPDPNKLHYFHLTVSPDESYYQGGRFQFEIEVPDAYNMVPPKVKCLTRIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKDEYRNKVEDYIKR 182          
The following BLAST results are available for this feature:
BLAST of CV884357 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 255
Match NameE-valueIdentityDescription
UBC34_ARATH1.551e-1131.09Ubiquitin carrier protein E2 34 OS=Arabidopsis tha... [more]
BIRC6_HUMAN2.025e-1128.83Baculoviral IAP repeat-containing protein 6 OS=Hom... [more]
UBC26_ARATH3.454e-1131.08Probable ubiquitin carrier protein E2 26 OS=Arabid... [more]
UBE2F_XENTR5.892e-1126.71NEDD8-conjugating enzyme UBE2F OS=Xenopus tropical... [more]
UBE2F_XENLA5.892e-1126.71NEDD8-conjugating enzyme UBE2F OS=Xenopus laevis G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_002H06_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_002_T7_H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884357 ID=CV884357; Name=CV884357; organism=Citrus sinensis; type=EST; length=781bp
TTTTTTTTTTTTTTTTTGGATGAAACATGAAACATGGGAAATCATATAAA
TTCATCACAAATTGGTACATAAAATTCTATTGTACGCAAGCTCAAAGGCA
CACAATACTGAAAGTAGTACTATATTATAATATGGATTAAATAGCTTTTA
ACATTCATATTTGGGAGGGGTAGCAAGACAACTCTGCTTGGTTTTTAATG
AGGCAGTGAATGAGAATGAAGTTAATCTGCTGTCCAGCTCTGTTCCACTA
TTTCCCTTACTCTTCTGTTGTATTCACGCTTGTTCTCACTAAACATCCGA
GCAGCTTCTGAATTTGCAGGAGAATTTGGGTTGGGATCACAGAGCAATGA
CTGAATAGATGTGAGTATAGCTGCCACATCATATATAGGACTCCACTGAT
TTTGCAAAATATCCAGACAAATACTTCCATCGGCATATATATTTGGATGA
AACATCCTAGAAACAAATCGCACAGTTGGCGGTTTGTTTGGATAATCCTC
CGTAAACTGAAGGGTCAACTTGAACGTACCTCCATCCCATGGCGTATCAT
CAGGACCAAATATCACAGCATTCCAGAGCATAATATTGTTGTCTTGGGGA
GCCCCACTGATGCCTGCAGGCGGGTCTTGCTGCAACCTTTTAAAATCTCT
CATCAGCCTCTTCCTTGCAGGTGTCGACATCGTCACCACCCACAAACTTC
AGAAATTCAATCAAAAGAAAAATCCAAGTCGTCGTCCTGAAAGGAAACGG
TACGAGAAACTGGTAAACAAGAGGGAAACCT
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