CV884356

Overview
NameCV884356
Unique NameCV884356
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length759
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884356 vs. ExPASy Swiss-Prot
Match: UBE2B_RABIT (Ubiquitin-conjugating enzyme E2 B OS=Oryctolagus cuniculus GN=UBE2B PE=2 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 1.918e-67
Identity = 114/149 (76.51%), Postives = 137/149 (91.95%), Query Frame = 3
Query:   99 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSW 545
            MSTPAR+RLMRDFKRLQ+DPP G+SGAP +NNIM WNAVIFGP+ TP++ GTFKL ++F+E+YPNKPPTVRF+S+MFHPN+YADGSICLDILQN+WSP YDV++ILTSIQSLL +PNPNSPANS+AA+++ ENKREY +RV  IVEQSW
Sbjct:    1 MSTPARRRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRVSAIVEQSW 149          
BLAST of CV884356 vs. ExPASy Swiss-Prot
Match: UBE2B_MOUSE (Ubiquitin-conjugating enzyme E2 B OS=Mus musculus GN=Ube2b PE=1 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 1.918e-67
Identity = 114/149 (76.51%), Postives = 137/149 (91.95%), Query Frame = 3
Query:   99 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSW 545
            MSTPAR+RLMRDFKRLQ+DPP G+SGAP +NNIM WNAVIFGP+ TP++ GTFKL ++F+E+YPNKPPTVRF+S+MFHPN+YADGSICLDILQN+WSP YDV++ILTSIQSLL +PNPNSPANS+AA+++ ENKREY +RV  IVEQSW
Sbjct:    1 MSTPARRRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRVSAIVEQSW 149          
BLAST of CV884356 vs. ExPASy Swiss-Prot
Match: UBE2B_HUMAN (Ubiquitin-conjugating enzyme E2 B OS=Homo sapiens GN=UBE2B PE=1 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 1.918e-67
Identity = 114/149 (76.51%), Postives = 137/149 (91.95%), Query Frame = 3
Query:   99 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSW 545
            MSTPAR+RLMRDFKRLQ+DPP G+SGAP +NNIM WNAVIFGP+ TP++ GTFKL ++F+E+YPNKPPTVRF+S+MFHPN+YADGSICLDILQN+WSP YDV++ILTSIQSLL +PNPNSPANS+AA+++ ENKREY +RV  IVEQSW
Sbjct:    1 MSTPARRRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRVSAIVEQSW 149          
BLAST of CV884356 vs. ExPASy Swiss-Prot
Match: UBE2B_BOVIN (Ubiquitin-conjugating enzyme E2 B OS=Bos taurus GN=UBE2B PE=2 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 1.918e-67
Identity = 114/149 (76.51%), Postives = 137/149 (91.95%), Query Frame = 3
Query:   99 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSW 545
            MSTPAR+RLMRDFKRLQ+DPP G+SGAP +NNIM WNAVIFGP+ TP++ GTFKL ++F+E+YPNKPPTVRF+S+MFHPN+YADGSICLDILQN+WSP YDV++ILTSIQSLL +PNPNSPANS+AA+++ ENKREY +RV  IVEQSW
Sbjct:    1 MSTPARRRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRVSAIVEQSW 149          
BLAST of CV884356 vs. ExPASy Swiss-Prot
Match: UBC1_CAEEL (Ubiquitin-conjugating enzyme E2 1 OS=Caenorhabditis elegans GN=ubc-1 PE=1 SV=1)

HSP 1 Score: 251.906 bits (642), Expect = 2.769e-66
Identity = 110/149 (73.83%), Postives = 139/149 (93.29%), Query Frame = 3
Query:   99 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSW 545
            M+TP+R+RLMRDFK+LQ+DPPAG+SGAP ++NI+ W A+IFGP +TP++ GTFKL+L+FTE+YPNKPPTV+F+S+MFHPN+YADGSICLDILQN+WSP YDVAAILTSIQSLL +PNPNSPANS AA+++ EN+REY +RV++IVEQSW
Sbjct:    1 MTTPSRRRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFISKMFHPNVYADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANSLAAQLYQENRREYEKRVQQIVEQSW 149          
BLAST of CV884356 vs. ExPASy Swiss-Prot
Match: UBC2_USTMA (Ubiquitin-conjugating enzyme E2 2 OS=Ustilago maydis GN=UBC2 PE=3 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 5.404e-62
Identity = 109/152 (71.71%), Postives = 129/152 (84.87%), Query Frame = 3
Query:   99 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWTAD 554
            MSTP++KRL+RDFKRL  DPP GISGAP  +N+M+WNAVIFGP DTP++ GTFKL L F E YPNKPPTV+F+S+MFHPN+YA+G +CLDILQN+WSP YDVAAILTSIQSLL DPNPNSPAN+EAA ++ EN +EY RRV+  VE SW  D
Sbjct:    1 MSTPSKKRLIRDFKRLSTDPPGGISGAPCADNLMIWNAVIFGPADTPFEDGTFKLVLTFDESYPNKPPTVKFLSKMFHPNVYANGELCLDILQNRWSPTYDVAAILTSIQSLLHDPNPNSPANAEAASLYRENMKEYVRRVKATVEASWLDD 152          
BLAST of CV884356 vs. ExPASy Swiss-Prot
Match: UBC2_SCHPO (Ubiquitin-conjugating enzyme E2 2 OS=Schizosaccharomyces pombe GN=rhp6 PE=1 SV=3)

HSP 1 Score: 232.646 bits (592), Expect = 1.738e-60
Identity = 108/149 (72.48%), Postives = 126/149 (84.56%), Query Frame = 3
Query:   99 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSW 545
            MST AR+RLMRDFKR+QQDPPAG+S +P  +N+MLWNAVI GP DTP++ GTFKL L F E YPNKPP V+FVS MFHPN+YA+G +CLDILQN+WSP YDVAAILTSIQSLL DPN  SPAN+EAA++  ENK+EY RRVR+ VE SW
Sbjct:    1 MSTTARRRLMRDFKRMQQDPPAGVSASPVSDNVMLWNAVIIGPADTPFEDGTFKLVLSFDEQYPNKPPLVKFVSTMFHPNVYANGELCLDILQNRWSPTYDVAAILTSIQSLLNDPNNASPANAEAAQLHRENKKEYVRRVRKTVEDSW 149          
BLAST of CV884356 vs. ExPASy Swiss-Prot
Match: UBC2_CRYNE (Ubiquitin-conjugating enzyme E2 2 OS=Cryptococcus neoformans GN=UBC2 PE=3 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.922e-59
Identity = 104/149 (69.80%), Postives = 128/149 (85.91%), Query Frame = 3
Query:   99 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSW 545
            MST A++RL+RDFKRL  D P GISG+P  +NIM+WNAVIFGP +TP++ G+F+LTL FT+ YPNKPPTVRF+S+MFHPNIYA+G +CLDILQN+WSP YDVAAILTS+QSLL DPNP SPAN +AA++F EN +EY RRV++ VE SW
Sbjct:    1 MSTAAKRRLIRDFKRLTSDAPIGISGSPNPDNIMVWNAVIFGPPETPFEDGSFRLTLTFTDAYPNKPPTVRFISKMFHPNIYANGELCLDILQNRWSPTYDVAAILTSVQSLLNDPNPASPANVDAAQLFKENLKEYERRVKKTVELSW 149          
BLAST of CV884356 vs. ExPASy Swiss-Prot
Match: UBC2_TRIHA (Ubiquitin-conjugating enzyme E2 2 OS=Trichoderma harzianum GN=UBC2 PE=2 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 5.592e-59
Identity = 101/149 (67.79%), Postives = 126/149 (84.56%), Query Frame = 3
Query:   99 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSW 545
            MST AR+RLMRDFKR+Q DPPAG+S +P  +N+M WNAVI GP DTP++ GTF+L +QF E YPNKPP V+F+S+MFHPN+YA+G +CLDILQN+WSP YDVAA+LTSIQSLL DPN  SPAN EA+ ++ +N+REY +RVRE VE+SW
Sbjct:    1 MSTAARRRLMRDFKRMQTDPPAGVSASPIPDNVMTWNAVIIGPADTPFEDGTFRLVMQFEEQYPNKPPQVKFISQMFHPNVYANGELCLDILQNRWSPTYDVAAVLTSIQSLLNDPNTGSPANVEASNLYKDNRREYIKRVRETVERSW 149          
BLAST of CV884356 vs. ExPASy Swiss-Prot
Match: UBC2_NECHA (Ubiquitin-conjugating enzyme E2 2 OS=Nectria haematococca GN=UBC2 PE=3 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 9.539e-59
Identity = 100/149 (67.11%), Postives = 124/149 (83.22%), Query Frame = 3
Query:   99 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSW 545
            MST AR+RLMRDFKR+Q DPPAG+S +P  +N+M WNAVI GP DTP++ GTF+L +QF E YPNKPP V+F+S MFHPN+YA G +CLDILQN+WSP YDVAA+LTSIQSLL DPN  SPAN EA+ ++ +N++EY +RVRE VE+SW
Sbjct:    1 MSTAARRRLMRDFKRMQTDPPAGVSASPVPDNVMTWNAVIIGPADTPFEDGTFRLVMQFEEQYPNKPPQVKFISEMFHPNVYATGELCLDILQNRWSPTYDVAAVLTSIQSLLNDPNTGSPANVEASNLYKDNRKEYTKRVRETVEKSW 149          
The following BLAST results are available for this feature:
BLAST of CV884356 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 255
Match NameE-valueIdentityDescription
UBE2B_RABIT1.918e-6776.51Ubiquitin-conjugating enzyme E2 B OS=Oryctolagus c... [more]
UBE2B_MOUSE1.918e-6776.51Ubiquitin-conjugating enzyme E2 B OS=Mus musculus ... [more]
UBE2B_HUMAN1.918e-6776.51Ubiquitin-conjugating enzyme E2 B OS=Homo sapiens ... [more]
UBE2B_BOVIN1.918e-6776.51Ubiquitin-conjugating enzyme E2 B OS=Bos taurus GN... [more]
UBC1_CAEEL2.769e-6673.83Ubiquitin-conjugating enzyme E2 1 OS=Caenorhabditi... [more]
UBC2_USTMA5.404e-6271.71Ubiquitin-conjugating enzyme E2 2 OS=Ustilago mayd... [more]
UBC2_SCHPO1.738e-6072.48Ubiquitin-conjugating enzyme E2 2 OS=Schizosacchar... [more]
UBC2_CRYNE1.922e-5969.80Ubiquitin-conjugating enzyme E2 2 OS=Cryptococcus ... [more]
UBC2_TRIHA5.592e-5967.79Ubiquitin-conjugating enzyme E2 2 OS=Trichoderma h... [more]
UBC2_NECHA9.539e-5967.11Ubiquitin-conjugating enzyme E2 2 OS=Nectria haema... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_002H06_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_002_T3_H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884356 ID=CV884356; Name=CV884356; organism=Citrus sinensis; type=EST; length=759bp
TTTCCCTCTTGTTTACCAGTTTCTCGTACCGTCTCCTTTCAGGACGACGA
CTTGGATTTTTCTTTTGATTGAATTTCTGAAGTTTGTGGGTGGTGACGAT
GTCGACACCTGCAAGGAAGAGGCTGATGAGAGATTTTAAAAGGTTGCAGC
AAGACCCGCCTGCAGGCATCAGTGGGGCTCCCCAAGACAACAATATTATG
CTCTGGAATGCTGTGATATTTGGTCCTGATGATACGCCATGGGATGGAGG
TACGTTCAAGTTGACCCTTCAGTTTACGGAGGATTATCCAAACAAACCGC
CAACTGTGCGATTTGTTTCTAGGATGTTTCATCCAAATATATATGCCGAT
GGAAGTATTTGTCTGGATATTTTGCAAAATCAGTGGAGTCCTATATATGA
TGTGGCAGCTATACTCACATCTATTCAGTCATTGCTCTGTGATCCCAACC
CAAATTCTCCTGCAAATTCAGAAGCTGCTCGGATGTTTAGTGAGAACAAG
CGTGAATACAACAGAAGAGTAAGGGAAATAGTGGAACAGAGCTGGACAGC
AGATTAACTTCATTCTCATTCACTGCCTCATTAAAAACCAAGCAGAGTTG
TCTTGCTACCCCTCCCAAATATGAATGTTAAAAGCTATTTAATCCATATT
ATAATATAGTACTACTTTCAGTATTGTGTGCCTTTGAGCTTGCGTACAAT
AGAATTTTATGTACCAATTTGTGATGAATTTATATGATTTCCCATGTTTC
ATGTTTCAT
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