CV884356

Overview
NameCV884356
Unique NameCV884356
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length759
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3187 contig Csv1_Contig3187:113..871. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884356 vs. ExPASy Swiss-Prot
Match: UB2E3_BOVIN (Ubiquitin-conjugating enzyme E2 E3 OS=Bos taurus GN=UBE2E3 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.801e-26
Identity = 58/143 (40.56%), Postives = 85/143 (59.44%), Query Frame = 3
Query:   99 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVRE 527
            +ST A KR+ ++   +  DPP   S  P+ +NI  W + I GP  + ++GG F L + F+ DYP KPP V F +R++H NI + G ICLDIL++ WSP   ++ +L SI SLL D NP  P     A  +  N+ E++R  R+
Sbjct:   59 LSTSA-KRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSSDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYLTNRAEHDRIARQ 200          
BLAST of CV884356 vs. ExPASy Swiss-Prot
Match: UB2E1_MOUSE (Ubiquitin-conjugating enzyme E2 E1 OS=Mus musculus GN=Ube2e1 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.801e-26
Identity = 58/143 (40.56%), Postives = 85/143 (59.44%), Query Frame = 3
Query:   99 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVRE 527
            +ST A KR+ ++   +  DPP   S  P+ +NI  W + I GP  + ++GG F L + FT +YP KPP V F +R++H NI + G ICLDIL++ WSP   ++ +L SI SLL D NP  P     A  +  N+ E++R  R+
Sbjct:   45 LSTSA-KRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQ 186          
BLAST of CV884356 vs. ExPASy Swiss-Prot
Match: UB2E1_HUMAN (Ubiquitin-conjugating enzyme E2 E1 OS=Homo sapiens GN=UBE2E1 PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.801e-26
Identity = 58/143 (40.56%), Postives = 85/143 (59.44%), Query Frame = 3
Query:   99 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVRE 527
            +ST A KR+ ++   +  DPP   S  P+ +NI  W + I GP  + ++GG F L + FT +YP KPP V F +R++H NI + G ICLDIL++ WSP   ++ +L SI SLL D NP  P     A  +  N+ E++R  R+
Sbjct:   45 LSTSA-KRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQ 186          
BLAST of CV884356 vs. ExPASy Swiss-Prot
Match: UBC1_SCHPO (Ubiquitin-conjugating enzyme E2 1 OS=Schizosaccharomyces pombe GN=ubc1 PE=2 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 3.659e-26
Identity = 55/152 (36.18%), Postives = 98/152 (64.47%), Query Frame = 3
Query:   99 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYAD-GSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWTA 551
            MS    +R+ ++   +QQD  AGI     +++I     +  GP+ TP++GG F + ++   DYP +PP + F ++++HPN+ +  G+ICLDIL++QWSP+Y + + L S+QSLLC P P++P +++ A+++ +N +++ R  RE     WT+
Sbjct:    1 MSDNRSRRIAKELADVQQDKQAGIQVWTINDDISHLKGMFRGPEGTPYEGGYFVVDIEIPIDYPFRPPKMNFDTKIYHPNVSSQTGAICLDILKDQWSPVYTMKSALISLQSLLCTPEPSNPQDAQVAQVYLQNYQQFVRTARE-----WTS 147          
BLAST of CV884356 vs. ExPASy Swiss-Prot
Match: UBC9_PAGMA (SUMO-conjugating enzyme UBC9 OS=Pagrus major GN=ube2i PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.778e-26
Identity = 60/149 (40.27%), Postives = 84/149 (56.38%), Query Frame = 3
Query:   99 MSTPARKRLMRDFKRLQQDPPAGISGAPQDN-----NIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ--NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVR 524
            MS  A  RL ++ K  ++D P G+   P  N     N+M     I G   TPW+GG FKL + F +DYP+ PP  +F   +FHPN+Y  G++CL IL+    W P   +  IL  IQ LL +PN   PA +EA  +F +++ EY +RVR
Sbjct:    1 MSGIALSRLAQERKAWRKDHPLGLVAVPTKNPDGTMNLMNGECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIFCQDRTEYEKRVR 149          
BLAST of CV884356 vs. ExPASy Swiss-Prot
Match: UBC9_MESAU (SUMO-conjugating enzyme UBC9 OS=Mesocricetus auratus GN=UBE2I PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 8.151e-26
Identity = 58/149 (38.93%), Postives = 82/149 (55.03%), Query Frame = 3
Query:   99 MSTPARKRLMRDFKRLQQDPPAGISGAPQDN-----NIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ--NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVR 524
            MS  A  RL ++ K  ++D P G    P  N     N+M W   I G   TPW+GG FKL + F +DYP+ PP  +F   +FHPN+Y  G++CL IL+    W P   +  +   IQ LL +PN   PA +EA  ++ +N+ EY +R R
Sbjct:    1 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITINQLFIGIQELLNEPNIQEPAQAEAYTIYCQNRVEYEKRFR 149          
BLAST of CV884356 vs. ExPASy Swiss-Prot
Match: UBC13_SCHPO (Ubiquitin-conjugating enzyme E2 13 OS=Schizosaccharomyces pombe GN=ubc13 PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 8.151e-26
Identity = 50/137 (36.50%), Postives = 86/137 (62.77%), Query Frame = 3
Query:  117 KRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVRE 527
            KR++++ + L +DPP GI  AP ++N+  +   + GP  + ++GG F L L   ++YP  PP VRF+++++HPN+   G ICL  L+  WSP   +  +L SIQ+L+  PNP+ P +++ A+++ EN+ +     RE
Sbjct:    5 KRIIKEIETLTRDPPPGIVAAPTEDNLRYFKITMEGPQQSAYEGGKFHLELFLPDEYPMMPPNVRFLTKIYHPNVDKLGRICLSTLKKDWSPALQIRTVLLSIQALMGAPNPDDPLDNDVAKIWKENEPQAIANARE 141          
BLAST of CV884356 vs. ExPASy Swiss-Prot
Match: UBCB_DICDI (Ubiquitin conjugating enzyme E2 B OS=Dictyostelium discoideum GN=ubcB PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.390e-25
Identity = 50/140 (35.71%), Postives = 89/140 (63.57%), Query Frame = 3
Query:  111 ARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNI-YADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVRE 527
            A KRL ++   + + PP+  S    D+N+  W A + GP+ +P++ G F + +    DYP KPPT++F ++++HPNI  +DG+IC ++  + WSP   +  +LT+I+S+L DPNP++P  +E A+ F  ++  +N+  +E
Sbjct:    3 AHKRLQKEITDMLKTPPSWCSAHLVDDNLQKWKATVQGPEGSPFEKGVFSMDIDIPADYPFKPPTLKFTTKIYHPNIKTSDGAICAEVF-STWSPQLKILDVLTTIRSILTDPNPDNPLETEIAQQFKTDRNAFNKTAKE 141          
BLAST of CV884356 vs. ExPASy Swiss-Prot
Match: UBE2C_MACFA (Ubiquitin-conjugating enzyme E2 C OS=Macaca fascicularis GN=UBE2C PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.816e-25
Identity = 57/148 (38.51%), Postives = 89/148 (60.14%), Query Frame = 3
Query:  108 PARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWTA 551
            P  KRL ++   L      GIS  P+ +N+  W   I G   T ++   +KL+L+F   YP   PTV+F++  +HPN+   G+ICLDIL+++WS +YDV  IL SIQSLL +PN +SP N+ AA ++ +N   + + ++E   +  T+
Sbjct:   30 PVGKRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDILKDKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELW-KNPTAFKKYLQETYSKQVTS 176          
BLAST of CV884356 vs. ExPASy Swiss-Prot
Match: UBC9_YEAST (SUMO-conjugating enzyme UBC9 OS=Saccharomyces cerevisiae GN=UBC9 PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.816e-25
Identity = 57/148 (38.51%), Postives = 84/148 (56.76%), Query Frame = 3
Query:   99 MSTPARKRLMRDFKRLQQDPPAGISGAPQDN-----NIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDIL--QNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRV 521
            MS+   +RL  + K+ ++D P G    P        ++  W A I G + T W GG + +T+++  +YP+KPP V+F +  +HPN+Y  G+ICL IL     W P   +  I+  +Q LL  PNPNSPA   A R FS NK EY+++V
Sbjct:    1 MSSLCLQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFYHPNVYPSGTICLSILNEDQDWRPAITLKQIVLGVQDLLDSPNPNSPAQEPAWRSFSRNKAEYDKKV 148          
The following BLAST results are available for this feature:
BLAST of CV884356 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 255
Match NameE-valueIdentityDescription
UB2E3_BOVIN2.801e-2640.56Ubiquitin-conjugating enzyme E2 E3 OS=Bos taurus G... [more]
UB2E1_MOUSE2.801e-2640.56Ubiquitin-conjugating enzyme E2 E1 OS=Mus musculus... [more]
UB2E1_HUMAN2.801e-2640.56Ubiquitin-conjugating enzyme E2 E1 OS=Homo sapiens... [more]
UBC1_SCHPO3.659e-2636.18Ubiquitin-conjugating enzyme E2 1 OS=Schizosacchar... [more]
UBC9_PAGMA4.778e-2640.27SUMO-conjugating enzyme UBC9 OS=Pagrus major GN=ub... [more]
UBC9_MESAU8.151e-2638.93SUMO-conjugating enzyme UBC9 OS=Mesocricetus aurat... [more]
UBC13_SCHPO8.151e-2636.50Ubiquitin-conjugating enzyme E2 13 OS=Schizosaccha... [more]
UBCB_DICDI1.390e-2535.71Ubiquitin conjugating enzyme E2 B OS=Dictyostelium... [more]
UBE2C_MACFA1.816e-2538.51Ubiquitin-conjugating enzyme E2 C OS=Macaca fascic... [more]
UBC9_YEAST1.816e-2538.51SUMO-conjugating enzyme UBC9 OS=Saccharomyces cere... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_002H06_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_002_T3_H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884356 ID=CV884356; Name=CV884356; organism=Citrus sinensis; type=EST; length=759bp
TTTCCCTCTTGTTTACCAGTTTCTCGTACCGTCTCCTTTCAGGACGACGA
CTTGGATTTTTCTTTTGATTGAATTTCTGAAGTTTGTGGGTGGTGACGAT
GTCGACACCTGCAAGGAAGAGGCTGATGAGAGATTTTAAAAGGTTGCAGC
AAGACCCGCCTGCAGGCATCAGTGGGGCTCCCCAAGACAACAATATTATG
CTCTGGAATGCTGTGATATTTGGTCCTGATGATACGCCATGGGATGGAGG
TACGTTCAAGTTGACCCTTCAGTTTACGGAGGATTATCCAAACAAACCGC
CAACTGTGCGATTTGTTTCTAGGATGTTTCATCCAAATATATATGCCGAT
GGAAGTATTTGTCTGGATATTTTGCAAAATCAGTGGAGTCCTATATATGA
TGTGGCAGCTATACTCACATCTATTCAGTCATTGCTCTGTGATCCCAACC
CAAATTCTCCTGCAAATTCAGAAGCTGCTCGGATGTTTAGTGAGAACAAG
CGTGAATACAACAGAAGAGTAAGGGAAATAGTGGAACAGAGCTGGACAGC
AGATTAACTTCATTCTCATTCACTGCCTCATTAAAAACCAAGCAGAGTTG
TCTTGCTACCCCTCCCAAATATGAATGTTAAAAGCTATTTAATCCATATT
ATAATATAGTACTACTTTCAGTATTGTGTGCCTTTGAGCTTGCGTACAAT
AGAATTTTATGTACCAATTTGTGATGAATTTATATGATTTCCCATGTTTC
ATGTTTCAT
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