CV884356

Overview
NameCV884356
Unique NameCV884356
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length759
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884356 vs. ExPASy Swiss-Prot
Match: UBE2T_XENLA (Ubiquitin-conjugating enzyme E2 T OS=Xenopus laevis GN=ube2t PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 9.325e-22
Identity = 56/157 (35.67%), Postives = 89/157 (56.69%), Query Frame = 3
Query:  120 RLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDIL----QNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWTAD*LHSHSLP 578
            RL R+ + L ++PP G+     ++N+    A I G   +P++GG F L +   E YP +PP +RF++ ++HPNI + G ICLDIL    +  W P  +++ +LTSIQ L+ +PNP+ P  ++ +  F     +YNR V     + WT      H+LP
Sbjct:    6 RLKRELQLLNKEPPPGVICWQNESNMDDLRAQIIGGSGSPYEGGIFNLEIIVPERYPFEPPKIRFLTPIYHPNIDSAGRICLDILKLPPKGAWRPALNISTVLTSIQLLMSEPNPDDPLMADISSEF-----KYNRAVFFSNAKKWT----EKHALP 153          
BLAST of CV884356 vs. ExPASy Swiss-Prot
Match: UBC14_SCHPO (Ubiquitin-conjugating enzyme E2 14 OS=Schizosaccharomyces pombe GN=ubc14 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.077e-21
Identity = 48/151 (31.79%), Postives = 87/151 (57.62%), Query Frame = 3
Query:   90 VVTMSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQ-WSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQ 539
            + + S  + +RL +++  L++ P   I     D+N+  W     GP D+ + GG F  +L+F  DYP +PPT+ F +R++HPN  ++G++CL IL+ Q + P   + ++L  I  LL +PNP+ P  +  A  +  ++  +++  R+ VEQ
Sbjct:    1 MASASPSSSRRLTKEYSDLREHPIPDIRVNLVDDNLFHWACTALGPSDSVYAGGKFHFSLKFPLDYPFQPPTIEFTTRIYHPNFDSEGNVCLAILKQQVFKPSIKLRSVLEQILQLLREPNPDDPLVASIAEQYRNDRPSFDKIARDYVEQ 151          
BLAST of CV884356 vs. ExPASy Swiss-Prot
Match: UE2NL_HUMAN (Putative ubiquitin-conjugating enzyme E2 N-like OS=Homo sapiens GN=UBE2NL PE=5 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.713e-21
Identity = 48/130 (36.92%), Postives = 80/130 (61.54%), Query Frame = 3
Query:  120 RLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPD-DTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKRE 506
            R++++ +RL  +P  GI   P ++N   ++ VI G   D+P++GGTFK  L   E+YP   P VRF+++++HPN+     I LDIL+++WSP   +  +L SIQ+LL  PNP+ P  ++    +  N+ +
Sbjct:    7 RIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGESKDSPFEGGTFKRELLLAEEYPMAAPKVRFMTKIYHPNVDKLERISLDILKDKWSPALQIRTVLLSIQALLNAPNPDDPLANDVVEQWKTNEAQ 136          
BLAST of CV884356 vs. ExPASy Swiss-Prot
Match: UBE2T_HUMAN (Ubiquitin-conjugating enzyme E2 T OS=Homo sapiens GN=UBE2T PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.713e-21
Identity = 52/144 (36.11%), Postives = 83/144 (57.64%), Query Frame = 3
Query:  120 RLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDIL----QNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQ 539
            RL R+   L  +PP GI+     + +    A I G  +TP++ G FKL +   E YP +PP +RF++ ++HPNI + G ICLD+L    +  W P  ++A +LTSIQ L+ +PNP+ P  ++ +  F  NK  + +  R+  E+
Sbjct:    6 RLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDDPLMADISSEFKYNKPAFLKNARQWTEK 149          
BLAST of CV884356 vs. ExPASy Swiss-Prot
Match: UBE2T_BOVIN (Ubiquitin-conjugating enzyme E2 T OS=Bos taurus GN=UBE2T PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.713e-21
Identity = 51/144 (35.42%), Postives = 82/144 (56.94%), Query Frame = 3
Query:  120 RLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDIL----QNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQ 539
            RL R+   L  +PP GI+     + +    A I G  +TP++ G FKL +   E YP +PP +RF++ ++HPNI + G ICLD+L    +  W P  ++A +LT IQ L+ +PNP+ P  ++ +  F  NK  + +  R+  E+
Sbjct:    6 RLKRELSLLAAEPPPGITCWQDGDRMEDLRAQILGGANTPYEKGVFKLEVHIPERYPFEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATLLTCIQQLMAEPNPDDPLMADISSEFKYNKPVFFKNARQWTEK 149          
BLAST of CV884356 vs. ExPASy Swiss-Prot
Match: UBE2S_BRAFL (Ubiquitin-conjugating enzyme E2 S OS=Branchiostoma floridae GN=BRAFLDRAFT_259979 PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.713e-21
Identity = 50/149 (33.56%), Postives = 80/149 (53.69%), Query Frame = 3
Query:   90 VVTMSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVE 536
            V  +S    +++ ++   L   PP G+   P + +I    A I GP  TP++GG FK+ L   +D+P  PP   F++++FHPN+  +G IC++ L+  W     +  IL +I+ LL  PNP S  N EA ++  E    Y+ R R + E
Sbjct:    7 VENLSPQIIRQVAKEVLDLANHPPEGVKVFPNEQDITDVQATIEGPGGTPYEGGQFKIKLSLGKDFPQTPPKGFFLTKIFHPNVAKNGEICVNTLKKDWKADLGLKHILLTIKCLLIYPNPESALNEEAGKLLLEQYDNYSERARMMTE 155          
BLAST of CV884356 vs. ExPASy Swiss-Prot
Match: UBE2T_MOUSE (Ubiquitin-conjugating enzyme E2 T OS=Mus musculus GN=Ube2t PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 6.045e-21
Identity = 51/143 (35.66%), Postives = 83/143 (58.04%), Query Frame = 3
Query:  120 RLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDIL----QNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVE 536
            RL ++   L  +PP GI+   + + +    A I G  +TP++ G F L +   E YP +PP VRF++ ++HPNI + G ICLDIL    +  W P  ++A +LTSIQ L+ +PNP+ P  ++ +  F  NK  + ++ ++  E
Sbjct:    6 RLKKELHMLAIEPPPGITCWQEKDQVADLRAQILGGANTPYEKGVFTLEVIIPERYPFEPPQVRFLTPIYHPNIDSSGRICLDILKLPPKGAWRPSLNIATVLTSIQLLMAEPNPDDPLMADISSEFKYNKIAFLKKAKQWTE 148          
BLAST of CV884356 vs. ExPASy Swiss-Prot
Match: UBE2S_DANRE (Ubiquitin-conjugating enzyme E2 S OS=Danio rerio GN=ube2s PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.894e-21
Identity = 47/136 (34.56%), Postives = 76/136 (55.88%), Query Frame = 3
Query:  129 RDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVE 536
            ++   L  DPP GI   P + +I   +  I GP+ TP+ GG F++ L   +D+P  PP   F++++FHPN+   G IC+++L+  W     +  +L +I+ LL  PNP S  N EA ++  E+ +EY  R   + E
Sbjct:   18 KEVSALAADPPEGIKIYPSEEDITELHTSIEGPEGTPYAGGVFRMRLVLGKDFPAVPPRGYFLTKIFHPNVGHKGEICVNVLKRDWKAELGLRHVLLTIKCLLIHPNPESALNEEAGKLLLEDYKEYASRAHLLTE 153          
BLAST of CV884356 vs. ExPASy Swiss-Prot
Match: UBC8_YEAST (Ubiquitin-conjugating enzyme E2-24 kDa OS=Saccharomyces cerevisiae GN=UBC8 PE=1 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 7.894e-21
Identity = 45/125 (36.00%), Postives = 83/125 (66.40%), Query Frame = 3
Query:  186 DNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNI-YADGSICLDILQNQWSPIYDVAAILT-SIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWTAD 554
            ++++  ++    GP DTP++ G ++L ++  ++YP K P++ FV+++FHPNI  A GSICLD++ + WSP+YD+  I+   I  LL +PN + P N+EAA +   +K+ Y  +++E +++  T +
Sbjct:   26 NDSMQEFHVKFLGPKDTPYENGVWRLHVELPDNYPYKSPSIGFVNKIFHPNIDIASGSICLDVINSTWSPLYDLINIVEWMIPGLLKEPNGSDPLNNEAATLQLRDKKLYEEKIKEYIDKYATKE 150          
BLAST of CV884356 vs. ExPASy Swiss-Prot
Match: UBC37_ARATH (Probable ubiquitin carrier protein E2 37 OS=Arabidopsis thaliana GN=UBC37 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.031e-20
Identity = 53/153 (34.64%), Postives = 84/153 (54.90%), Query Frame = 3
Query:  120 RLMRDFKRLQQDPPAGIS---------GAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDIL----QNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQ 539
            R+ ++ K L  DPP G S         G+   +     +A I GP+DT +  G F L +Q  E YP +PP V F + ++HPNI   G ICLDIL    +  W P  +++ +LTS++ LL +PNP+     E +R +  N++ ++ + RE+ E+
Sbjct:   10 RMQKELKLLLSDPPHGASFPHLSSAANGSGDFSTFSTIDAQIEGPEDTVYANGIFNLKIQIPERYPFQPPIVSFATPIYHPNIDNSGRICLDILNLPPKGAWQPSLNISTVLTSMRLLLSEPNPDDGLMCEVSREYKYNRQTFDYKAREMTEK 162          
The following BLAST results are available for this feature:
BLAST of CV884356 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 255
Match NameE-valueIdentityDescription
UBE2T_XENLA9.325e-2235.67Ubiquitin-conjugating enzyme E2 T OS=Xenopus laevi... [more]
UBC14_SCHPO2.077e-2131.79Ubiquitin-conjugating enzyme E2 14 OS=Schizosaccha... [more]
UE2NL_HUMAN2.713e-2136.92Putative ubiquitin-conjugating enzyme E2 N-like OS... [more]
UBE2T_HUMAN2.713e-2136.11Ubiquitin-conjugating enzyme E2 T OS=Homo sapiens ... [more]
UBE2T_BOVIN2.713e-2135.42Ubiquitin-conjugating enzyme E2 T OS=Bos taurus GN... [more]
UBE2S_BRAFL2.713e-2133.56Ubiquitin-conjugating enzyme E2 S OS=Branchiostoma... [more]
UBE2T_MOUSE6.045e-2135.66Ubiquitin-conjugating enzyme E2 T OS=Mus musculus ... [more]
UBE2S_DANRE7.894e-2134.56Ubiquitin-conjugating enzyme E2 S OS=Danio rerio G... [more]
UBC8_YEAST7.894e-2136.00Ubiquitin-conjugating enzyme E2-24 kDa OS=Saccharo... [more]
UBC37_ARATH1.031e-2034.64Probable ubiquitin carrier protein E2 37 OS=Arabid... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_002H06_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_002_T3_H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884356 ID=CV884356; Name=CV884356; organism=Citrus sinensis; type=EST; length=759bp
TTTCCCTCTTGTTTACCAGTTTCTCGTACCGTCTCCTTTCAGGACGACGA
CTTGGATTTTTCTTTTGATTGAATTTCTGAAGTTTGTGGGTGGTGACGAT
GTCGACACCTGCAAGGAAGAGGCTGATGAGAGATTTTAAAAGGTTGCAGC
AAGACCCGCCTGCAGGCATCAGTGGGGCTCCCCAAGACAACAATATTATG
CTCTGGAATGCTGTGATATTTGGTCCTGATGATACGCCATGGGATGGAGG
TACGTTCAAGTTGACCCTTCAGTTTACGGAGGATTATCCAAACAAACCGC
CAACTGTGCGATTTGTTTCTAGGATGTTTCATCCAAATATATATGCCGAT
GGAAGTATTTGTCTGGATATTTTGCAAAATCAGTGGAGTCCTATATATGA
TGTGGCAGCTATACTCACATCTATTCAGTCATTGCTCTGTGATCCCAACC
CAAATTCTCCTGCAAATTCAGAAGCTGCTCGGATGTTTAGTGAGAACAAG
CGTGAATACAACAGAAGAGTAAGGGAAATAGTGGAACAGAGCTGGACAGC
AGATTAACTTCATTCTCATTCACTGCCTCATTAAAAACCAAGCAGAGTTG
TCTTGCTACCCCTCCCAAATATGAATGTTAAAAGCTATTTAATCCATATT
ATAATATAGTACTACTTTCAGTATTGTGTGCCTTTGAGCTTGCGTACAAT
AGAATTTTATGTACCAATTTGTGATGAATTTATATGATTTCCCATGTTTC
ATGTTTCAT
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