CV884356

Overview
NameCV884356
Unique NameCV884356
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length759
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3187 contig Csv1_Contig3187:113..871. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CV884356 vs. ExPASy Swiss-Prot
Match: UB2D3_MOUSE (Ubiquitin-conjugating enzyme E2 D3 OS=Mus musculus GN=Ube2d3 PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.482e-35
Identity = 68/139 (48.92%), Postives = 95/139 (68.35%), Query Frame = 3 
Query:  111 ARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVRE 527
            A KR+ ++   L +DPPA  S  P  +++  W A I GP+D+P+ GG F LT+ F  DYP KPP V F +R++HPNI ++GSICLDIL++QWSP   ++ +L SI SLLCDPNP+ P   E AR++  ++ +YNR  RE
Sbjct:    2 ALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISRE 140
[Close]
BLAST of CV884356 vs. ExPASy Swiss-Prot
Match: UB2D3_MACFA (Ubiquitin-conjugating enzyme E2 D3 OS=Macaca fascicularis GN=UBE2D3 PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.482e-35
Identity = 68/139 (48.92%), Postives = 95/139 (68.35%), Query Frame = 3 
Query:  111 ARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVRE 527
            A KR+ ++   L +DPPA  S  P  +++  W A I GP+D+P+ GG F LT+ F  DYP KPP V F +R++HPNI ++GSICLDIL++QWSP   ++ +L SI SLLCDPNP+ P   E AR++  ++ +YNR  RE
Sbjct:    2 ALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISRE 140
[Close]
BLAST of CV884356 vs. ExPASy Swiss-Prot
Match: UB2D3_HUMAN (Ubiquitin-conjugating enzyme E2 D3 OS=Homo sapiens GN=UBE2D3 PE=1 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.482e-35
Identity = 68/139 (48.92%), Postives = 95/139 (68.35%), Query Frame = 3 
Query:  111 ARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVRE 527
            A KR+ ++   L +DPPA  S  P  +++  W A I GP+D+P+ GG F LT+ F  DYP KPP V F +R++HPNI ++GSICLDIL++QWSP   ++ +L SI SLLCDPNP+ P   E AR++  ++ +YNR  RE
Sbjct:    2 ALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISRE 140
[Close]
BLAST of CV884356 vs. ExPASy Swiss-Prot
Match: UB2D2_PIG (Ubiquitin-conjugating enzyme E2 D2 OS=Sus scrofa GN=UBE2D2 PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.482e-35
Identity = 68/139 (48.92%), Postives = 95/139 (68.35%), Query Frame = 3 
Query:  111 ARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVRE 527
            A KR+ ++   L +DPPA  S  P  +++  W A I GP+D+P+ GG F LT+ F  DYP KPP V F +R++HPNI ++GSICLDIL++QWSP   ++ +L SI SLLCDPNP+ P   E AR++  ++ +YNR  RE
Sbjct:    2 ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISRE 140
[Close]
BLAST of CV884356 vs. ExPASy Swiss-Prot
Match: UBCD1_DROME (Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophila melanogaster GN=eff PE=1 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.935e-35
Identity = 67/139 (48.20%), Postives = 94/139 (67.63%), Query Frame = 3 
Query:  111 ARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVRE 527
            A KR+ ++ + L +DPPA  S  P  +++  W A I GP D+P+ GG F LT+ F  DYP KPP V F +R++HPNI ++GSICLDIL++QWSP   ++ +L SI SLLCDPNP+ P   E AR++  ++ +YN   RE
Sbjct:    2 ALKRINKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNELARE 140
[Close]
BLAST of CV884356 vs. ExPASy Swiss-Prot
Match: UB2D1_MOUSE (Ubiquitin-conjugating enzyme E2 D1 OS=Mus musculus GN=Ube2d1 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.935e-35
Identity = 66/139 (47.48%), Postives = 94/139 (67.63%), Query Frame = 3 
Query:  111 ARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVRE 527
            A KR+ ++   LQ+DPPA  S  P  +++  W A I GP D+ + GG F LT+ F  DYP KPP + F ++++HPNI ++GSICLDIL++QWSP   V+ +L SI SLLCDPNP+ P   + A+++  +K +YNR  RE
Sbjct:    2 ALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHARE 140
[Close]
BLAST of CV884356 vs. ExPASy Swiss-Prot
Match: UB2D1_HUMAN (Ubiquitin-conjugating enzyme E2 D1 OS=Homo sapiens GN=UBE2D1 PE=1 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.935e-35
Identity = 66/139 (47.48%), Postives = 94/139 (67.63%), Query Frame = 3 
Query:  111 ARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVRE 527
            A KR+ ++   LQ+DPPA  S  P  +++  W A I GP D+ + GG F LT+ F  DYP KPP + F ++++HPNI ++GSICLDIL++QWSP   V+ +L SI SLLCDPNP+ P   + A+++  +K +YNR  RE
Sbjct:    2 ALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHARE 140
[Close]
BLAST of CV884356 vs. ExPASy Swiss-Prot
Match: UB2D1_BOVIN (Ubiquitin-conjugating enzyme E2 D1 OS=Bos taurus GN=UBE2D1 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.935e-35
Identity = 66/139 (47.48%), Postives = 94/139 (67.63%), Query Frame = 3 
Query:  111 ARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVRE 527
            A KR+ ++   LQ+DPPA  S  P  +++  W A I GP D+ + GG F LT+ F  DYP KPP + F ++++HPNI ++GSICLDIL++QWSP   V+ +L SI SLLCDPNP+ P   + A+++  +K +YNR  RE
Sbjct:    2 ALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHARE 140
[Close]
BLAST of CV884356 vs. ExPASy Swiss-Prot
Match: UBC2_CAEEL (Ubiquitin-conjugating enzyme E2 2 OS=Caenorhabditis elegans GN=let-70 PE=1 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.301e-35
Identity = 66/139 (47.48%), Postives = 94/139 (67.63%), Query Frame = 3 
Query:  111 ARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVRE 527
            A KR+ ++ + L +DPPA  S  P  +++  W A I GP ++P+ GG F LT+ F  DYP KPP V F +R++HPNI ++GSICLDIL++QWSP   ++ +L SI SLLCDPNP+ P   E AR++  ++  YN+  RE
Sbjct:    2 ALKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRERYNQLARE 140
[Close]
BLAST of CV884356 vs. ExPASy Swiss-Prot
Match: UB2D3_BOVIN (Ubiquitin-conjugating enzyme E2 D3 OS=Bos taurus GN=UBE2D3 PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 9.606e-35
Identity = 67/139 (48.20%), Postives = 94/139 (67.63%), Query Frame = 3 
Query:  111 ARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVRE 527
            A KR+ ++   L +DPPA  S  P  +++  W A I GP+D+P+ GG F LT+ F  DYP KPP V F +R++HPNI ++ SICLDIL++QWSP   ++ +L SI SLLCDPNP+ P   E AR++  ++ +YNR  RE
Sbjct:    2 ALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNDSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISRE 140
The following BLAST results are available for this feature:
BLAST of CV884356 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 255
Match NameE-valueIdentityDescription
UB2D3_MOUSE1.482e-3548.92Ubiquitin-conjugating enzyme E2 D3 OS=Mus musculus... [more]
UB2D3_MACFA1.482e-3548.92Ubiquitin-conjugating enzyme E2 D3 OS=Macaca fasci... [more]
UB2D3_HUMAN1.482e-3548.92Ubiquitin-conjugating enzyme E2 D3 OS=Homo sapiens... [more]
UB2D2_PIG1.482e-3548.92Ubiquitin-conjugating enzyme E2 D2 OS=Sus scrofa G... [more]
UBCD1_DROME1.935e-3548.20Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophi... [more]
UB2D1_MOUSE1.935e-3547.48Ubiquitin-conjugating enzyme E2 D1 OS=Mus musculus... [more]
UB2D1_HUMAN1.935e-3547.48Ubiquitin-conjugating enzyme E2 D1 OS=Homo sapiens... [more]
UB2D1_BOVIN1.935e-3547.48Ubiquitin-conjugating enzyme E2 D1 OS=Bos taurus G... [more]
UBC2_CAEEL3.301e-3547.48Ubiquitin-conjugating enzyme E2 2 OS=Caenorhabditi... [more]
UB2D3_BOVIN9.606e-3548.20Ubiquitin-conjugating enzyme E2 D3 OS=Bos taurus G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_002H06_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_002_T3_H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884356 ID=CV884356; Name=CV884356; organism=Citrus sinensis; type=EST; length=759bp
TTTCCCTCTTGTTTACCAGTTTCTCGTACCGTCTCCTTTCAGGACGACGA
CTTGGATTTTTCTTTTGATTGAATTTCTGAAGTTTGTGGGTGGTGACGAT
GTCGACACCTGCAAGGAAGAGGCTGATGAGAGATTTTAAAAGGTTGCAGC
AAGACCCGCCTGCAGGCATCAGTGGGGCTCCCCAAGACAACAATATTATG
CTCTGGAATGCTGTGATATTTGGTCCTGATGATACGCCATGGGATGGAGG
TACGTTCAAGTTGACCCTTCAGTTTACGGAGGATTATCCAAACAAACCGC
CAACTGTGCGATTTGTTTCTAGGATGTTTCATCCAAATATATATGCCGAT
GGAAGTATTTGTCTGGATATTTTGCAAAATCAGTGGAGTCCTATATATGA
TGTGGCAGCTATACTCACATCTATTCAGTCATTGCTCTGTGATCCCAACC
CAAATTCTCCTGCAAATTCAGAAGCTGCTCGGATGTTTAGTGAGAACAAG
CGTGAATACAACAGAAGAGTAAGGGAAATAGTGGAACAGAGCTGGACAGC
AGATTAACTTCATTCTCATTCACTGCCTCATTAAAAACCAAGCAGAGTTG
TCTTGCTACCCCTCCCAAATATGAATGTTAAAAGCTATTTAATCCATATT
ATAATATAGTACTACTTTCAGTATTGTGTGCCTTTGAGCTTGCGTACAAT
AGAATTTTATGTACCAATTTGTGATGAATTTATATGATTTCCCATGTTTC
ATGTTTCAT
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