CV884356

Overview
NameCV884356
Unique NameCV884356
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length759
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3187 contig Csv1_Contig3187:113..871. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884356 vs. ExPASy Swiss-Prot
Match: UBC9_ARATH (SUMO-conjugating enzyme UBC9 OS=Arabidopsis thaliana GN=UBC9 PE=1 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.767e-34
Identity = 67/146 (45.89%), Postives = 93/146 (63.70%), Query Frame = 3
Query:  111 ARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWT 548
            A KR++++ K LQ+DPP   S  P   ++  W A I GP D+P+ GG F +T+ F  DYP KPP V F +++FHPNI ++GSICLDIL+ QWSP   ++ +L SI SLL DPNP+ P   E A M+  +K +Y     E   ++WT
Sbjct:    2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKNKY-----ESTARTWT 142          
BLAST of CV884356 vs. ExPASy Swiss-Prot
Match: UBC28_ARATH (Ubiquitin carrier protein E2 28 OS=Arabidopsis thaliana GN=UBC28 PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 8.132e-34
Identity = 66/146 (45.21%), Postives = 93/146 (63.70%), Query Frame = 3
Query:  111 ARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWT 548
            A KR++++ K LQ+DPP   S  P   ++  W A I GP D+P+ GG F +T+ F  DYP KPP V F +++FHPN+ ++GSICLDIL+ QWSP   ++ +L SI SLL DPNP+ P   E A M+  ++ +Y     E   +SWT
Sbjct:    2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNVNSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKY-----ESTARSWT 142          
BLAST of CV884356 vs. ExPASy Swiss-Prot
Match: UBC10_ARATH (Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis thaliana GN=UBC10 PE=1 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.062e-33
Identity = 67/146 (45.89%), Postives = 93/146 (63.70%), Query Frame = 3
Query:  111 ARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWT 548
            A KR++++ K LQ+DPP   S  P   ++  W A I GP ++P+ GG F +T+ F  DYP KPP V F +++FHPNI ++GSICLDIL+ QWSP   ++ +L SI SLL DPNP+ P   E A M+  +K +Y     E   +SWT
Sbjct:    2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSESPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKNKY-----ESTARSWT 142          
BLAST of CV884356 vs. ExPASy Swiss-Prot
Match: UBC4_SOLLC (Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.090e-33
Identity = 66/146 (45.21%), Postives = 93/146 (63.70%), Query Frame = 3
Query:  111 ARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWT 548
            A KR++++ K LQ+DPP   S  P   ++  W A I GP D+P+ GG F +++ F  DYP KPP V F +++FHPNI ++GSICLDIL+ QWSP   ++ +L SI SLL DPNP+ P   E A M+  ++ +Y     E   +SWT
Sbjct:    2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPTDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKY-----ETTARSWT 142          
BLAST of CV884356 vs. ExPASy Swiss-Prot
Match: UBC8_ARATH (Ubiquitin-conjugating enzyme E2 8 OS=Arabidopsis thaliana GN=UBC8 PE=1 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 5.271e-33
Identity = 65/146 (44.52%), Postives = 93/146 (63.70%), Query Frame = 3
Query:  111 ARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWT 548
            A KR++++ K LQ+DPP   S  P   ++  W A I GP ++P+ GG F +T+ F  DYP KPP V F +++FHPNI ++GSICLDIL+ QWSP   ++ +L SI SLL DPNP+ P   E A M+  ++ +Y     E   ++WT
Sbjct:    2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPAESPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKY-----EATARNWT 142          
BLAST of CV884356 vs. ExPASy Swiss-Prot
Match: UBC29_ARATH (Ubiquitin carrier protein E2 29 OS=Arabidopsis thaliana GN=UBC29 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 8.991e-33
Identity = 63/146 (43.15%), Postives = 95/146 (65.07%), Query Frame = 3
Query:  111 ARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWT 548
            A +R++++ K LQ+DPP   S  P   ++  W A I GP+++P+ GG F + + F  DYP KPP V F +++FHPNI ++G+ICLDIL++QWSP   ++ +L SI SLL DPNP+ P   E A ++  +K +Y     E + +SWT
Sbjct:    2 ATRRILKELKELQRDPPVSCSAGPTGEDMFHWQATIMGPNESPYSGGVFLVNIHFPPDYPFKPPKVVFRTKVFHPNINSNGNICLDILKDQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHIYKTDKTKY-----EAMARSWT 142          
BLAST of CV884356 vs. ExPASy Swiss-Prot
Match: UBC30_ARATH (Ubiquitin carrier protein E2 30 OS=Arabidopsis thaliana GN=UBC30 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.534e-32
Identity = 66/146 (45.21%), Postives = 93/146 (63.70%), Query Frame = 3
Query:  111 ARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWT 548
            A KR+ ++ + LQ+DPP   S  P  +++  W A I GP D+P+ GG F +T+ F  DYP KPP V F ++++HPNI ++GSICLDIL+ QWSP   V+ +L SI SLL DPNP+ P   E A ++  ++ +Y     E   QSWT
Sbjct:    2 ASKRINKELRDLQRDPPVSCSAGPTGDDMFQWQATIMGPADSPFAGGVFLVTIHFPPDYPFKPPKVAFRTKVYHPNINSNGSICLDILKEQWSPALTVSKVLLSICSLLTDPNPDDPLVPEIAHIYKTDRVKY-----ESTAQSWT 142          
BLAST of CV884356 vs. ExPASy Swiss-Prot
Match: UBC11_ARATH (Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis thaliana GN=UBC11 PE=2 SV=2)

HSP 1 Score: 139.813 bits (351), Expect = 1.534e-32
Identity = 64/146 (43.84%), Postives = 94/146 (64.38%), Query Frame = 3
Query:  111 ARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWT 548
            A KR++++ K LQ+DPP+  S  P   ++  W A I GP ++P+ GG F +++ F  DYP KPP V F ++++HPNI ++GSICLDIL+ QWSP   ++ +L SI SLL DPNP+ P   E A M+  ++ +Y     E   +SWT
Sbjct:    2 ASKRILKELKDLQKDPPSNCSAGPVAEDMFHWQATIMGPPESPYAGGVFLVSIHFPPDYPFKPPKVSFKTKVYHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKY-----ESTARSWT 142          
BLAST of CV884356 vs. ExPASy Swiss-Prot
Match: UBC4_SCHPO (Ubiquitin-conjugating enzyme E2 4 OS=Schizosaccharomyces pombe GN=ubc4 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.828e-32
Identity = 63/139 (45.32%), Postives = 89/139 (64.03%), Query Frame = 3
Query:  111 ARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVRE 527
            A KR+ R+   L +DPP+  S  P  +++  W A I GP D+P+ GG F L++ F  DYP KPP V F +R++HPNI ++GSICLDIL++QWSP   ++ +L SI SLL DPNP+ P   E A ++  ++  Y    RE
Sbjct:    2 ALKRINRELADLGKDPPSSCSAGPVGDDLFHWQATIMGPADSPYAGGVFFLSIHFPTDYPFKPPKVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHVYKTDRSRYELSARE 140          
BLAST of CV884356 vs. ExPASy Swiss-Prot
Match: UBC12_ARATH (Probable ubiquitin-conjugating enzyme E2 12 OS=Arabidopsis thaliana GN=UBC12 PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 7.611e-32
Identity = 66/147 (44.90%), Postives = 91/147 (61.90%), Query Frame = 3
Query:  111 ARKRLMRDFKRLQQDPPAGISGAP-QDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWT 548
            A KR+ R+ + +Q+ PPA  S  P  + +I  W A I GP D+P+ GG F +++ F+ DYP KPP V F ++++HPNI + GSICLDIL+ QWSP    + +L SI SLL DPNPN P   E A ++  +K +Y     E   Q WT
Sbjct:    2 ASKRISRELRDMQRHPPANCSAGPVAEEDIFHWQATIMGPHDSPYSGGVFTVSIDFSSDYPFKPPKVNFKTKVYHPNIDSKGSICLDILKEQWSPAPTTSKVLLSICSLLTDPNPNDPLVPEIAHLYKVDKSKY-----ESTAQKWT 143          
The following BLAST results are available for this feature:
BLAST of CV884356 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 255
Match NameE-valueIdentityDescription
UBC9_ARATH4.767e-3445.89SUMO-conjugating enzyme UBC9 OS=Arabidopsis thalia... [more]
UBC28_ARATH8.132e-3445.21Ubiquitin carrier protein E2 28 OS=Arabidopsis tha... [more]
UBC10_ARATH1.062e-3345.89Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis ... [more]
UBC4_SOLLC3.090e-3345.21Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum ... [more]
UBC8_ARATH5.271e-3344.52Ubiquitin-conjugating enzyme E2 8 OS=Arabidopsis t... [more]
UBC29_ARATH8.991e-3343.15Ubiquitin carrier protein E2 29 OS=Arabidopsis tha... [more]
UBC30_ARATH1.534e-3245.21Ubiquitin carrier protein E2 30 OS=Arabidopsis tha... [more]
UBC11_ARATH1.534e-3243.84Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis ... [more]
UBC4_SCHPO5.828e-3245.32Ubiquitin-conjugating enzyme E2 4 OS=Schizosacchar... [more]
UBC12_ARATH7.611e-3244.90Probable ubiquitin-conjugating enzyme E2 12 OS=Ara... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_2_002H06_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_002_T3_H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884356 ID=CV884356; Name=CV884356; organism=Citrus sinensis; type=EST; length=759bp
TTTCCCTCTTGTTTACCAGTTTCTCGTACCGTCTCCTTTCAGGACGACGA
CTTGGATTTTTCTTTTGATTGAATTTCTGAAGTTTGTGGGTGGTGACGAT
GTCGACACCTGCAAGGAAGAGGCTGATGAGAGATTTTAAAAGGTTGCAGC
AAGACCCGCCTGCAGGCATCAGTGGGGCTCCCCAAGACAACAATATTATG
CTCTGGAATGCTGTGATATTTGGTCCTGATGATACGCCATGGGATGGAGG
TACGTTCAAGTTGACCCTTCAGTTTACGGAGGATTATCCAAACAAACCGC
CAACTGTGCGATTTGTTTCTAGGATGTTTCATCCAAATATATATGCCGAT
GGAAGTATTTGTCTGGATATTTTGCAAAATCAGTGGAGTCCTATATATGA
TGTGGCAGCTATACTCACATCTATTCAGTCATTGCTCTGTGATCCCAACC
CAAATTCTCCTGCAAATTCAGAAGCTGCTCGGATGTTTAGTGAGAACAAG
CGTGAATACAACAGAAGAGTAAGGGAAATAGTGGAACAGAGCTGGACAGC
AGATTAACTTCATTCTCATTCACTGCCTCATTAAAAACCAAGCAGAGTTG
TCTTGCTACCCCTCCCAAATATGAATGTTAAAAGCTATTTAATCCATATT
ATAATATAGTACTACTTTCAGTATTGTGTGCCTTTGAGCTTGCGTACAAT
AGAATTTTATGTACCAATTTGTGATGAATTTATATGATTTCCCATGTTTC
ATGTTTCAT
back to top