CV884346

Overview
NameCV884346
Unique NameCV884346
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length871
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884346 vs. ExPASy Swiss-Prot
Match: P2C44_ORYSJ (Probable protein phosphatase 2C 44 OS=Oryza sativa subsp. japonica GN=Os04g0609600 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.742e-17
Identity = 80/286 (27.97%), Postives = 120/286 (41.96%), Query Frame = 2
Query:   38 STPKTEKFSEDGQNENVRYGLSSMQGWRA-TMEDAHAAYPDLDSS--TSFFGVYDGHGGKAVAKFCAKYLHQQVLKHEAYSAGDLVTSAQKAFLRMDEMMRGQRGWRELAILGDKMDKFSGMIEGFIWSPKGGEANDHFDDWTSEEGPHSDFHGPTSGSTACVAIIRD-KQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFI-----QVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLFSQE 868
            S+  T K      +  V +G   ++G     MED H A    D S     F ++DGH G +V  +    L   +LK   +      T+ Q+A          +  +R                            N +  +   + GP         GSTA  AI+ D K + VAN GDSR V+  +G A  L+ DH+P    E+ RI K GGF+      V RVNG L +ARA GD   K +         +++ PD+  + +    EF+++A DG+W  + +QE
Sbjct:   53 SSTDTGKGRSKQSSNKVTHGFHLVEGKSGHDMEDYHVAEYKYDKSHELGLFAIFDGHLGDSVPSYLKANLFCNILKEPIFW-----TNPQEAI---------KNAYRS--------------------------TNKYILENAKQLGP--------GGSTAVTAIVVDGKDMWVANVGDSRAVVCERGAANQLTVDHEPHTTNERQRIEKQGGFVTTFPGDVPRVNGQLAVARAFGDQSLKAH---------LSSEPDVRHVPINSSIEFVILASDGLWKVMKNQE 281          
BLAST of CV884346 vs. ExPASy Swiss-Prot
Match: PPM1F_MOUSE (Protein phosphatase 1F OS=Mus musculus GN=Ppm1f PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.275e-17
Identity = 71/269 (26.39%), Postives = 119/269 (44.24%), Query Frame = 2
Query:   98 LSSMQGWRATMEDAHAAYPDLDS--------STSFFGVYDGHGGKAVAKFCAKYLHQQVLKHEAYSAGDLVTSAQKAFLRMDEMMRGQRGWRELAILGDKMDKFSGMIEGFIWSPKGGEANDHFDDWTSEEGPHSDFHGPTSGSTACVAIIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFIQV---GRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLFSQEL 871
            + +++  R  MED H + P  +           ++F V+DGHGG   A++ + ++H     H+     +   + ++AF   DEM   Q+  RE                                                SG+T   A+I    L VA  GDS+ +L ++G+ + L + HKP+ + EK RI   GGF+ +    RVNG+L ++RAIGDV          +K  V+   D ++ EL   +++L++ACDG +D +   E+
Sbjct:  156 IHAIRNTRRKMEDRHVSLPAFNHLFGLSDSVHRAYFAVFDGHGGVDAARYASVHVHTNA-SHQPELRTNPAAALKEAFRLTDEMFL-QKAKRERL---------------------------------------------QSGTTGVCALIAGAALHVAWLGDSQVILVQQGRVVKLMEPHKPERQDEKARIEALGGFVSLMDCWRVNGTLAVSRAIGDV---------FQKPYVSGEADAASRELTGSEDYLLLACDGFFDVVPHHEV 368          
BLAST of CV884346 vs. ExPASy Swiss-Prot
Match: P2C17_ARATH (Probable protein phosphatase 2C 17 OS=Arabidopsis thaliana GN=At1g78200 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.972e-17
Identity = 82/283 (28.98%), Postives = 126/283 (44.52%), Query Frame = 2
Query:   62 SEDGQNEN----VRYGLSSMQGW-RATMEDAHAA-YPDLDSST-SFFGVYDGHGGKAVAKFCAKYLHQQVLKHEAYSAGDLVTSAQKAFLRMDEMMRGQRGWRELAILGD-KMDKFSGMIEGFIWSPKGGEANDHFDDWTSEEGPHSDFHGPTSGSTACVAI-IRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFI-----QVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLFSQE 868
            S  G+  N    ++YG S ++G    +MED H A + + + +    F ++DGH G  VA +  K+L   +LK      G+ +   ++A  +  E         +  IL D + D  SG                                    GSTA  AI I  K L +AN GDSR ++S +G+A  +S DH PD + E+  I   GGF+      V RVNG L ++R  GD      K+L   K  + + P+I  + +    +FL++A DGI   + +QE
Sbjct:   19 SNSGKGRNGEGGIKYGFSLIKGKSNHSMEDYHVAKFTNFNGNELGLFAIFDGHKGDHVAAYLQKHLFSNILKD-----GEFLVDPRRAIAKAYENT-------DQKILADNRTDLESG------------------------------------GSTAVTAILINGKALWIANVGDSRAIVSSRGKAKQMSVDHDPDDDTERSMIESKGGFVTNRPGDVPRVNGLLAVSRVFGD------KNL---KAYLNSEPEIKDVTIDSHTDFLILASDGISKVMSNQE 244          
BLAST of CV884346 vs. ExPASy Swiss-Prot
Match: P2C58_ARATH (Probable protein phosphatase 2C 58 OS=Arabidopsis thaliana GN=At4g28400 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 8.647e-17
Identity = 82/272 (30.15%), Postives = 120/272 (44.12%), Query Frame = 2
Query:   80 ENVRYGLSSMQGWRA-TMED-AHAAYPDLDS-STSFFGVYDGHGGKAVAKFCAKYLHQQVLKHEAYSAGDLVTSAQKAFLRMDEMMRGQRGWRELAILGDKMDKFSGMIEGFIWSPKGGEANDHFDDWTSEEGPHSDFHGPTSGSTACVAIIRD-KQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFI-----QVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLFSQE 868
            +N+ +G   ++G  +  MED   + +  L+      F ++DGH G  VAK+    L   +LK + +   D   + + A+   D ++  Q                         S K G+                       GSTA   I+ D K+LVVAN GDSR V+S+ G A  LS DH+P    EK  I   GGF+      V RV+G L +ARA GD   KL+         +++ PDI+   + D  EF++ A DGIW  L +QE
Sbjct:   32 KNITHGFHCVKGKSSHPMEDYVVSEFKKLEGHELGLFAIFDGHLGHDVAKYLQTNLFDNILKEKDFWT-DTENAIRNAYRSTDAVILQQ-------------------------SLKLGKG----------------------GSTAVTGILIDGKKLVVANVGDSRAVMSKNGVAHQLSVDHEP--SKEKKEIESRGGFVSNIPGDVPRVDGQLAVARAFGDKSLKLH---------LSSEPDITHQTIDDHTEFILFASDGIWKVLSNQE 244          
BLAST of CV884346 vs. ExPASy Swiss-Prot
Match: P2C39_ARATH (Probable protein phosphatase 2C 39 OS=Arabidopsis thaliana GN=At3g15260 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 8.647e-17
Identity = 58/130 (44.62%), Postives = 79/130 (60.77%), Query Frame = 2
Query:  500 GSTACVAI-IRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFI-----QVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDD-EFLVIACDGIWDCLFSQE 868
            GSTA  AI I  ++LVVAN GDSR V+ + G A  LS DH+P++  EKD I   GGF+      V RV+G L +ARA GD   K++  L +E  +        T+E+ DDD EFL++A DG+W  + +QE
Sbjct:  133 GSTAVTAILINCQKLVVANVGDSRAVICQNGVAKPLSVDHEPNM--EKDEIENRGGFVSNFPGDVPRVDGQLAVARAFGDKSLKMH--LSSEPYV--------TVEIIDDDAEFLILASDGLWKVMSNQE 250          
BLAST of CV884346 vs. ExPASy Swiss-Prot
Match: P2C09_ARATH (Probable protein phosphatase 2C 9 OS=Arabidopsis thaliana GN=At1g22280 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.286e-16
Identity = 79/270 (29.26%), Postives = 112/270 (41.48%), Query Frame = 2
Query:   86 VRYGLSSMQGW-RATMEDAHAA--YPDLDSSTSFFGVYDGHGGKAVAKFCAKYLHQQVLKHEAYSAGDLVTSAQKAFLRMDEMMRGQRGWRELAILGDKMDKFSGMIEGFIWSPKGGEANDHFDDWTSEEGPHSDFHGPTSGSTACVAI-IRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFI-----QVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLFSQE 868
            ++YG S ++G     MED H A      D     F +YDGH G +V  +  K L   +LK   +   D   S  KA+ + D+           AIL +  D   G                                    GSTA  AI I  ++L +AN GDSR VLS  G    +S DH+P    E+  I   GGF+      V RVNG L ++RA GD   K +         +++ PDI    +    + L++A DGIW  + ++E
Sbjct:   32 IKYGFSLVKGKANHPMEDYHVANFINIQDHELGLFAIYDGHMGDSVPAYLQKRLFSNILKEGEFWV-DPRRSIAKAYEKTDQ-----------AILSNSSDLGRG------------------------------------GSTAVTAILINGRKLWIANVGDSRAVLSHGGAITQMSTDHEP--RTERSSIEDRGGFVSNLPGDVPRVNGQLAVSRAFGDKGLKTH---------LSSEPDIKEATVDSQTDVLLLASDGIWKVMTNEE 242          
BLAST of CV884346 vs. ExPASy Swiss-Prot
Match: P2C28_ARATH (Probable protein phosphatase 2C 28 OS=Arabidopsis thaliana GN=At2g34740 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 9.560e-16
Identity = 51/135 (37.78%), Postives = 77/135 (57.04%), Query Frame = 2
Query:  488 GPTSGSTACVAIIRD-KQLVVANAGDSRCVLSRKGQALN-LSKDHKPDLEVEKDRILKAGGFIQ-----VGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLFSQEL 871
            GP  GSTA  AI+ D K++VVAN GDSR +L R+   +  ++ DH+PD E  +D +   GGF+      V RV+G L + RA GD   K         + ++  P+I   E+ DD +FL++A DG+W  + + E+
Sbjct:   74 GPRGGSTAVTAIVIDGKKIVVANVGDSRAILCRESDVVKQITVDHEPDKE--RDLVKSKGGFVSQKPGNVPRVDGQLAMTRAFGDGGLK---------EHISVIPNIEIAEIHDDTKFLILASDGLWKVMSNDEV 197          
BLAST of CV884346 vs. ExPASy Swiss-Prot
Match: P2C20_ARATH (Probable protein phosphatase 2C 20 OS=Arabidopsis thaliana GN=PPC3-1.2 PE=1 SV=3)

HSP 1 Score: 83.5741 bits (205), Expect = 1.631e-15
Identity = 76/272 (27.94%), Postives = 119/272 (43.75%), Query Frame = 2
Query:   80 ENVRYGLSSMQGWRA-TMED-AHAAYPDLDS-STSFFGVYDGHGGKAVAKFCAKYLHQQVLKHEAYSAGDLVTSAQKAFLRMDEMMRGQRGWRELAILGDKMDKFSGMIEGFIWSPKGGEANDHFDDWTSEEGPHSDFHGPTSGSTACVAIIRD-KQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFI-----QVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLFSQE 868
            +N+ +G   ++G     MED   + +  +D      F ++DGH G  VAK+    L   +LK + +   D   + + A++  D ++  Q                         S K G+                       GSTA   I+ D K LV+AN GDSR V+S+ G A  LS DH+P    E+  I   GGF+      V RV+G L +ARA GD   K++         ++++PDI    +  + EF++ A DG+W  + +QE
Sbjct:   28 KNIAHGYDFVKGKAGHPMEDYVVSEFKKVDGHDLGLFAIFDGHLGHDVAKYLQTNLFDNILKEKDFWT-DTKNAIRNAYISTDAVILEQ-------------------------SLKLGKG----------------------GSTAVTGILIDGKTLVIANVGDSRAVMSKNGVASQLSVDHEP--SKEQKEIESRGGFVSNIPGDVPRVDGQLAVARAFGDKSLKIH---------LSSDPDIRDENIDHETEFILFASDGVWKVMSNQE 240          
BLAST of CV884346 vs. ExPASy Swiss-Prot
Match: P2C62_ORYSJ (Probable protein phosphatase 2C 62 OS=Oryza sativa subsp. japonica GN=Os07g0507000 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 8.093e-15
Identity = 80/289 (27.68%), Postives = 122/289 (42.21%), Query Frame = 2
Query:   38 STPKTEKFSEDGQNENVRYGLSSMQGW-RATMEDAHAAY--PDLDSSTSFFGVYDGHGGKAVAKFCAKYLHQQVLKHEAYSAGDLVTSAQKAFLRMDEMMRGQRGWRELAILGDKMDKFSGMIEGFIWSPKGGEANDHFDDWTSEEGPHSDFHGPTSGSTACVAIIRDKQ----LVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFI-----QVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLFSQE 868
            S P+T K       + V++G   ++G     MED   A    + +     F ++DGH G  V  F   +L   +LK   +       S  +A +R    +   +     A LG                                            GSTA  AI+   +    LVVAN GDSR V+S+ G A  LS DH+P+   E+  I K GGF+      V RV+G L +ARA GD      +SL   K+ +++ PD+    + ++ +FL++A DG+W  + +QE
Sbjct:   21 SGPETGKGKTKLSGKRVKHGYHLVKGKSNHPMEDYLVAEYRQEGEHDLGLFAIFDGHLGHTVPDFLRSHLFDNILKQPEF------LSNPQAAIRNAYQLTDAKILESAAELG------------------------------------------RGGSTAVTAILISSENSVNLVVANVGDSRAVISKSGVAKQLSVDHEPN--KERHSIEKKGGFVSNLPGDVPRVDGQLAVARAFGD------RSL---KKHLSSEPDVVEEPIDENTDFLILASDGLWKVMSNQE 250          
BLAST of CV884346 vs. ExPASy Swiss-Prot
Match: P2C41_ORYSJ (Probable protein phosphatase 2C 41 OS=Oryza sativa subsp. japonica GN=Os04g0451900/Os04g0452000 PE=2 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 1.380e-14
Identity = 76/271 (28.04%), Postives = 113/271 (41.70%), Query Frame = 2
Query:   86 VRYGLSSMQGW-RATMEDAHAAY--PDLDSSTSFFGVYDGHGGKAVAKFCAKYLHQQVLKHEAYSAGDLVTSAQKAFLRMDEMMRGQRGWRELAILGDKMDKFSGMIEGFIWSPKGGEANDHFDDWTSEEGPHSDFHGPTSGSTACVAIIRD-KQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFI-----QVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLFSQEL 871
            V YG   ++G     MED H A    +  +    F ++DGH G  V  +  K L   +L  E +     +T   +A ++  E         + AIL    D   G                                    GSTA  AI+ + ++L VAN GDSR VL + G+ + +S DH P+  VE+  I   GGF+      V RV G L ++RA GD            K ++ + PDI   ++    E LV+A DG+W  + +QE+
Sbjct:   34 VSYGFYLVRGMTNHPMEDYHVAELAEEKGNELGLFAIFDGHLGDTVPAYLQKNLFANILNEEEF-----LTQPDRAIIKAYEKT-------DQAILSHTPDLGQG------------------------------------GSTAVTAILLNGRKLWVANVGDSRAVLLKGGRPIQMSTDHDPN--VERSAIENRGGFVSNMPGDVPRVCGQLAVSRAFGDRNL---------KSLLKSEPDIKVEDIDYTAELLVLASDGLWKVMNNQEV 245          
The following BLAST results are available for this feature:
BLAST of CV884346 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
P2C44_ORYSJ1.742e-1727.97Probable protein phosphatase 2C 44 OS=Oryza sativa... [more]
PPM1F_MOUSE2.275e-1726.39Protein phosphatase 1F OS=Mus musculus GN=Ppm1f PE... [more]
P2C17_ARATH2.972e-1728.98Probable protein phosphatase 2C 17 OS=Arabidopsis ... [more]
P2C58_ARATH8.647e-1730.15Probable protein phosphatase 2C 58 OS=Arabidopsis ... [more]
P2C39_ARATH8.647e-1744.62Probable protein phosphatase 2C 39 OS=Arabidopsis ... [more]
P2C09_ARATH3.286e-1629.26Probable protein phosphatase 2C 9 OS=Arabidopsis t... [more]
P2C28_ARATH9.560e-1637.78Probable protein phosphatase 2C 28 OS=Arabidopsis ... [more]
P2C20_ARATH1.631e-1527.94Probable protein phosphatase 2C 20 OS=Arabidopsis ... [more]
P2C62_ORYSJ8.093e-1527.68Probable protein phosphatase 2C 62 OS=Oryza sativa... [more]
P2C41_ORYSJ1.380e-1428.04Probable protein phosphatase 2C 41 OS=Oryza sativa... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_002G12_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_002_T3_G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884346 ID=CV884346; Name=CV884346; organism=Citrus sinensis; type=EST; length=871bp
CTCTCTGCTCAAAGTAAAGAAAATGGGGGTATATCTGAGCACCCCCAAGA
CTGAGAAGTTCTCGGAGGATGGTCAAAATGAGAATGTTCGATATGGATTG
TCGTCGATGCAGGGGTGGCGTGCGACCATGGAAGATGCTCATGCAGCTTA
TCCAGATTTGGACAGTTCTACATCTTTCTTTGGTGTTTATGATGGCCACG
GTGGTAAAGCAGTGGCCAAATTTTGTGCCAAGTATCTTCACCAGCAGGTG
CTCAAACATGAAGCTTATTCAGCTGGAGATTTAGTCACTTCAGCACAGAA
AGCTTTTCTCAGAATGGATGAGATGATGCGTGGACAAAGGGGATGGAGAG
AATTAGCTATACTGGGAGATAAAATGGACAAGTTTTCTGGCATGATTGAG
GGGTTCATATGGTCTCCTAAGGGTGGTGAAGCCAATGATCATTTTGACGA
TTGGACATCGGAGGAGGGTCCTCACTCAGATTTTCATGGACCAACTTCTG
GAAGTACAGCTTGCGTAGCAATCATTAGAGACAAGCAACTCGTGGTTGCA
AATGCTGGTGATTCTCGTTGTGTGTTATCGAGGAAGGGCCAGGCACTTAA
TCTATCTAAAGACCATAAGCCTGATCTTGAGGTTGAGAAAGATAGAATTC
TCAAAGCTGGTGGTTTTATACAAGTTGGACGTGTTAATGGAAGTTTAAAT
TTGGCGAGAGCTATTGGAGATGTGGAGTTCAAGCTAAACAAAAGTTTGCC
TGCTGAAAAACAGATTGTGACTGCCAATCCTGATATAAGTACTATTGAAC
TTTGTGATGACGATGAGTTTCTTGTCATAGCTTGTGATGGGATTTGGGAT
TGCCTTTTCAGTCAAGAACTT
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