CV884346

Overview
NameCV884346
Unique NameCV884346
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length871
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884346 vs. ExPASy Swiss-Prot
Match: P2C03_ORYSJ (Probable protein phosphatase 2C 3 OS=Oryza sativa subsp. japonica GN=Os01g0513100 PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.429e-11
Identity = 69/245 (28.16%), Postives = 105/245 (42.86%), Query Frame = 2
Query:  179 FGVYDGHGGKAVAKFCAKYLHQQVLKHEAYSAGDLVTSAQKAFLRMDEMMRGQRGWRELAILGDKMDKFSGMIEGFIWSPKGGEANDHFDDWTSEEGPHSDFHGPTSGSTACVAIIRDKQLVVANAGDSRCVLSRKGQALN-LSKDHKPDLEV-EKDRILKAGGFIQVGRVN--------------GSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLFSQ 865
            F V DGH G A A     Y    +L H        V SA    L  +E +                     ++ GF+               T +E  H    G TSG+TA   II    + VA+ GDSRC+L  +G A++ L+ DH+ +  V E++R+  +GG  +VGR++              G L L+R+IGD++           + +   P +  ++L +    L+IA DGIWD L S+
Sbjct:  125 FAVLDGHNGNAAAI----YTRDNLLNH--------VLSAMPRGLSREEWLHALP---------------RALVAGFVK--------------TDKEFQHK---GQTSGTTATFVIIDGWTITVASVGDSRCILDAQGGAVSLLTVDHRLEENVEERERVTASGG--EVGRLSVVGGAEIGPLRCWPGGLCLSRSIGDIDV---------GEFIVPVPYVKQVKLSNAGGRLIIASDGIWDALSSE 314          
BLAST of CV884346 vs. ExPASy Swiss-Prot
Match: CYAA_YEAST (Adenylate cyclase OS=Saccharomyces cerevisiae GN=CYR1 PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.429e-11
Identity = 41/119 (34.45%), Postives = 67/119 (56.30%), Query Frame = 2
Query:  497 SGSTACVAIIRDKQLVVANAGDSRCVLSRK-GQALNLSKDHKPDLEVEKDRILKAGGFIQVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWD 850
            SG+ + V  IR K+L  AN GD   +LS+  G    L+K H P    E +RI  +GG++  G+++G ++++RA+G  +      LP     + A+PDIS + L   DE L++A   +W+
Sbjct: 1470 SGACSTVIYIRGKKLFAANLGDCMAILSKNNGDYQTLTKQHLPTKREEYERIRISGGYVNNGKLDGVVDVSRAVGFFDL-----LPH----IHASPDISVVTLTKADEMLIVATHKLWE 1579          
BLAST of CV884346 vs. ExPASy Swiss-Prot
Match: P2C52_ARATH (Probable protein phosphatase 2C 52 OS=Arabidopsis thaliana GN=At4g03415 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.437e-11
Identity = 78/278 (28.06%), Postives = 113/278 (40.65%), Query Frame = 2
Query:  104 SMQGWRATMEDAHAAYPD-LDSSTSFFGVYDGHG--GKAVAKFCAKYLHQQVLKHEAYSAGDLVTSAQKAFLRMDEMMRGQRGWRELAILGDKMDKFSGMI-EGFIWSPKGGEANDHFDDWTSEEGPHSDFHGPTSGSTACVAIIRDKQLVVANAGDSRCVLSRKGQ-----ALNLSKDHKPDLEVEKDRILKAGGFI-------QVGRV------NGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLFSQEL 871
            + QG +   +DA   + D +    +F GV+DGHG  G  VA+     L  ++             S    F R       Q   +E    G   DK  G+  E F+ S         F     E   H +     SGST    + +   L + N GDSR +L  K       A  L+ D KPDL  E +RI +  G +       +V RV         L +ARA GD   K        +  V + P+ +   L D D+F+V+A DG+WD L ++E+
Sbjct:   72 TQQGRKGINQDAMIVWEDFMSEDVTFCGVFDGHGPYGHLVARKVRDTLPVKLQFFFQTLQSKQNCSKGTRFRRNSSKSAVQEAVKE----GSDEDKLKGLWGEAFLKS---------FKAMDKELRSHPNLDCFCSGSTGVTILKQGSNLFMGNIGDSRAILGSKDSNDSMVATQLTVDLKPDLPREAERIKRCKGRVFAMEDEPEVPRVWLPYDDAPGLAMARAFGDFCLK--------EYGVISVPEFTHRVLTDRDQFIVLASDGVWDVLSNEEV 328          
BLAST of CV884346 vs. ExPASy Swiss-Prot
Match: P2C41_ARATH (Probable protein phosphatase 2C 41 OS=Arabidopsis thaliana GN=At3g16800 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.090e-11
Identity = 53/143 (37.06%), Postives = 78/143 (54.55%), Query Frame = 2
Query:  497 SGSTACVAIIRDKQLVVANAGDSRCVL---SRKGQAL---NLSKDHKPDLEVEKDRILKAGGFI----------QVGRVN-GSLNLA--RAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLFSQE 868
            SG TA  A+++   LV+ANAGDSR V+   S  G  L    LS D KP++  E +RI ++ G +          +VG  N GSL LA  RA GD   K +  L +E       P+++  ++ D D+FL++A DG+WD + + E
Sbjct:  169 SGCTALTAVLQGDHLVIANAGDSRAVIATTSDDGNGLVPVQLSVDFKPNIPEEAERIKQSDGRLFCLDDEPGVYRVGMPNGGSLGLAVSRAFGDYCLK-DFGLVSE-------PEVTYRKITDKDQFLILATDGMWDVMTNNE 303          
BLAST of CV884346 vs. ExPASy Swiss-Prot
Match: YR307_MIMIV (PP2C-like domain-containing protein R307 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R307 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.260e-11
Identity = 41/121 (33.88%), Postives = 61/121 (50.41%), Query Frame = 2
Query:  533 KQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFIQVGRVN---------GSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLFSQE 868
            + + V N GD R VL + G A+ L+KDHKP    EK RI +     +              G L+++R+ GD++             VT  PD+   +L  DDEF+++ACDG+WD L + E
Sbjct:    7 ENIQVINIGDCRAVLCKNGLAIPLNKDHKPIWPDEKRRIDRVNEKYETNEKIHFDAGDWRIGDLSVSRSFGDLD---------NTPYVTHVPDLFDYQLQSDDEFIIMACDGVWDVLENHE 118          
The following BLAST results are available for this feature:
BLAST of CV884346 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
P2C03_ORYSJ1.429e-1128.16Probable protein phosphatase 2C 3 OS=Oryza sativa ... [more]
CYAA_YEAST1.429e-1134.45Adenylate cyclase OS=Saccharomyces cerevisiae GN=C... [more]
P2C52_ARATH2.437e-1128.06Probable protein phosphatase 2C 52 OS=Arabidopsis ... [more]
P2C41_ARATH7.090e-1137.06Probable protein phosphatase 2C 41 OS=Arabidopsis ... [more]
YR307_MIMIV9.260e-1133.88PP2C-like domain-containing protein R307 OS=Acanth... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_002G12_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_002_T3_G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884346 ID=CV884346; Name=CV884346; organism=Citrus sinensis; type=EST; length=871bp
CTCTCTGCTCAAAGTAAAGAAAATGGGGGTATATCTGAGCACCCCCAAGA
CTGAGAAGTTCTCGGAGGATGGTCAAAATGAGAATGTTCGATATGGATTG
TCGTCGATGCAGGGGTGGCGTGCGACCATGGAAGATGCTCATGCAGCTTA
TCCAGATTTGGACAGTTCTACATCTTTCTTTGGTGTTTATGATGGCCACG
GTGGTAAAGCAGTGGCCAAATTTTGTGCCAAGTATCTTCACCAGCAGGTG
CTCAAACATGAAGCTTATTCAGCTGGAGATTTAGTCACTTCAGCACAGAA
AGCTTTTCTCAGAATGGATGAGATGATGCGTGGACAAAGGGGATGGAGAG
AATTAGCTATACTGGGAGATAAAATGGACAAGTTTTCTGGCATGATTGAG
GGGTTCATATGGTCTCCTAAGGGTGGTGAAGCCAATGATCATTTTGACGA
TTGGACATCGGAGGAGGGTCCTCACTCAGATTTTCATGGACCAACTTCTG
GAAGTACAGCTTGCGTAGCAATCATTAGAGACAAGCAACTCGTGGTTGCA
AATGCTGGTGATTCTCGTTGTGTGTTATCGAGGAAGGGCCAGGCACTTAA
TCTATCTAAAGACCATAAGCCTGATCTTGAGGTTGAGAAAGATAGAATTC
TCAAAGCTGGTGGTTTTATACAAGTTGGACGTGTTAATGGAAGTTTAAAT
TTGGCGAGAGCTATTGGAGATGTGGAGTTCAAGCTAAACAAAAGTTTGCC
TGCTGAAAAACAGATTGTGACTGCCAATCCTGATATAAGTACTATTGAAC
TTTGTGATGACGATGAGTTTCTTGTCATAGCTTGTGATGGGATTTGGGAT
TGCCTTTTCAGTCAAGAACTT
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