CV884346

Overview
NameCV884346
Unique NameCV884346
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length871
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9283 contig Csv1_Contig9283:28..898. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884346 vs. ExPASy Swiss-Prot
Match: ILKAP_HUMAN (Integrin-linked kinase-associated serine/threonine phosphatase 2C OS=Homo sapiens GN=ILKAP PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.775e-23
Identity = 84/273 (30.77%), Postives = 128/273 (46.89%), Query Frame = 2
Query:   98 LSSMQGWRATMEDAHAAYPDLDSS----------TSFFGVYDGHGGKAVAKFCAKYLHQQVLKHEAYSAGDLVTSAQKAFLRMDEMMRGQRGWRELAILGDKMDKFSGMIEGFIWSPKGGEANDHFDDWTSEEGPHSDFHGPTSGSTACVAIIRDKQLVVANAGDSRCVL------SRKGQALNLSKDHKPDLEVEKDRILKAGGFIQVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLFSQE 868
            ++  +G R  M+DAH    D+              S+F V+DGHGG   +KF A+ LHQ +++   +  GD++ S +K   R                    +D F    E F+      +A+     W               GSTA   +  D  L +AN GDSR +L      S+K  AL+LSK+H P    E+ RI KAGG ++ GRV G L ++R+IGD ++K        +  VT+ PDI   +L  +D F+++ACDG++     +E
Sbjct:  111 VAERKGEREEMQDAHVILNDITEECRPPSSLITRVSYFAVFDGHGGIRASKFAAQNLHQNLIRK--FPKGDVI-SVEKTVKRC------------------LLDTFKHTDEEFL-----KQASSQKPAWKD-------------GSTATCVLAVDNILYIANLGDSRAILCRYNEESQKHAALSLSKEHNPTQYEERMRIQKAGGNVRDGRVLGVLEVSRSIGDGQYK--------RCGVTSVPDIRRCQLTPNDRFILLACDGLFKVFTPEE 336          
BLAST of CV884346 vs. ExPASy Swiss-Prot
Match: ILKAP_BOVIN (Integrin-linked kinase-associated serine/threonine phosphatase 2C OS=Bos taurus GN=ILKAP PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.734e-23
Identity = 83/273 (30.40%), Postives = 124/273 (45.42%), Query Frame = 2
Query:   98 LSSMQGWRATMEDAHAAYPDLDSS----------TSFFGVYDGHGGKAVAKFCAKYLHQQVLKHEAYSAGDLVTSAQKAFLRMDEMMRGQRGWRELAILGDKMDKFSGMIEGFIWSPKGGEANDHFDDWTSEEGPHSDFHGPTSGSTACVAIIRDKQLVVANAGDSRCVL------SRKGQALNLSKDHKPDLEVEKDRILKAGGFIQVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLFSQE 868
            ++  +G R  M+DAH    D+ +            S+F V+DGHGG   +KF A+ LHQ +++      G  V    K  L                     +D F    E F+      +A+     W               GSTA   +  D  L +AN GDSR +L      S+K  AL+LSK+H P    E+ RI KAGG ++ GRV G L ++R+IGD ++K        +  VT+ PDI   +L  +D F+++ACDG++     +E
Sbjct:   89 VAERKGEREEMQDAHVILNDITAECQPPSALVTRVSYFAVFDGHGGIRASKFAAQNLHQNLIRKFPKGDGISVEKTVKRCL---------------------LDTFKHTDEEFL-----KQASSQKPAWKD-------------GSTATCVLAVDNTLYIANLGDSRAILCRYNEESQKHAALSLSKEHNPTQYEERMRIQKAGGNVRDGRVLGVLEVSRSIGDGQYK--------RCGVTSVPDIRRCQLTPNDRFILLACDGLFKVFTPEE 314          
BLAST of CV884346 vs. ExPASy Swiss-Prot
Match: PPM1L_HUMAN (Protein phosphatase 1L OS=Homo sapiens GN=PPM1L PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 8.074e-23
Identity = 84/278 (30.22%), Postives = 130/278 (46.76%), Query Frame = 2
Query:   56 KFSEDGQNENVRYGLSSMQGWRATMEDAHAAYPDLDSST--SFFGVYDGHGGKAVAKFCAKYLHQQVLKHEAYSAGDLVTSAQKAFLRMDEMMRGQRGWRELAILGDKMDKFSGMIEGFIWSPKGGEANDHFDDWTSEEGPHSDFHGPTSGSTACVAIIRDKQLVVANAGDSRCVLSRK-GQALNLSKDHKPDLEVEKDRILKAGGFIQVG---RVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCD-DDEFLVIACDGIWDCLFSQE 868
            +FS+  + +N    + S+QG R  MED      DL + T  S FG++DGHGG+  A++    L + + +H      D     + + L    ++  Q     L+I  + ++K +   +                                +G+T  +A++ DK L VAN GDSR VL  K G A+ LS DHKP    E+ RI +AGGFI      RV G L ++R++GD   K          +V  +PDI T +L     EF+++A DG+WD   ++E
Sbjct:   81 EFSKTWEFKNHNVAVYSIQGRRDHMEDRFEVLTDLANKTHPSIFGIFDGHGGETAAEYVKSRLPEALKQH----LQDYEKDKENSVLSYQTILEQQI----LSIDREMLEKLTVSYD-------------------------------EAGTTCLIALLSDKDLTVANVGDSRGVLCDKDGNAIPLSHDHKPYQLKERKRIKRAGGFISFNGSWRVQGILAMSRSLGDYPLK-------NLNVVIPDPDILTFDLDKLQPEFMILASDGLWDAFSNEE 312          
BLAST of CV884346 vs. ExPASy Swiss-Prot
Match: P2C55_ORYSJ (Probable protein phosphatase 2C 55 OS=Oryza sativa subsp. japonica GN=Os06g0526700 PE=2 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 8.074e-23
Identity = 85/284 (29.93%), Postives = 134/284 (47.18%), Query Frame = 2
Query:   44 PKTEKFSEDG----QNENVRYGLSSMQGWRATMEDAHAAYPDL--DSSTSFFGVYDGHGGKAVAKFCAKYLHQQVLKHEAYSAGDLVTSAQKAFLRMDEMMRGQRGWRELAILGDKMDKFSGMIEGFIWSPKGGEANDHFDDWTSEEGPHSDFHGPTSGSTACVAIIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFI---QVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLFSQE 868
            P   +F  DG    ++  + +G SS QG R +MED  +         + S FGV+DGHGG   A++  K+L + ++KH  +   D   +  + FL+ D                D +   S               +D + D                GSTA  AI+   +L VAN GDSR V  + G+A+ LS+DHKP+ + E+ RI  AGG +    + RV+G L ++RA G      N+ +   K+ V A P+I    + +  E+LV+A DG+WD + +++
Sbjct:  103 PPRSRFDGDGVGCSKDGKLSWGYSSFQGRRPSMEDRLSIKSTTVNGETVSLFGVFDGHGGPRAAEYLKKHLFKNLVKHPKFLK-DTKLAINQTFLKTD---------------ADFLQSIS---------------SDRYRD---------------DGSTAVAAILIGNRLYVANVGDSRAVALKAGKAVPLSEDHKPNKKDERKRIEDAGGIVVSDDIWRVDGILAVSRAFG------NRLM---KRYVKAEPNIQEKVVDEGLEYLVLATDGLWDVMRNED 331          
BLAST of CV884346 vs. ExPASy Swiss-Prot
Match: P2C13_ORYSJ (Probable protein phosphatase 2C 13 OS=Oryza sativa subsp. japonica GN=Os02g0255100 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 8.074e-23
Identity = 89/273 (32.60%), Postives = 131/273 (47.99%), Query Frame = 2
Query:   65 EDGQNENVRYGLSSMQGWRATMEDAH-AAYPDLDS-STSFFGVYDGHGGKAVAKFCAKYLHQQVLKHEAYSAGDLVTSAQKAFLRMDEMMRGQRGWRELAILGDKMDKFSGMIEGFIWSPKGGEANDHFDDWTSEEGPHSDFHGPTSGSTACVAIIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFI---QVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLFSQE 868
            EDG+   ++ G SS +G RATMED +     ++D  + S FGV+DGHGG   A++  + L + +LKH  +   D   +  + + + D                            F+ S    E+N   DD                GSTA  A++    L VAN GDSR V+S+ G+A+ LS+DHKP+   E+ RI  AGG +      RV G L ++RA G      N+ L   K  V A P+I    + +D E LV+A DG+WD + ++E
Sbjct:  106 EDGK---LKCGYSSFRGKRATMEDFYDVKLTEIDGQAVSLFGVFDGHGGPRAAEYLKENLFENLLKHPEFLT-DTKLAISETYQKTDT--------------------------DFLES----ESNAFRDD----------------GSTASTAVLVGGHLYVANVGDSRAVVSKAGKAMALSEDHKPNRSDERKRIENAGGVVIWAGTWRVGGVLAMSRAFG------NRLL---KPFVVAEPEIQEELVNEDLECLVLASDGLWDVVENEE 319          
BLAST of CV884346 vs. ExPASy Swiss-Prot
Match: PP2C1_YEAST (Protein phosphatase 2C homolog 1 OS=Saccharomyces cerevisiae GN=PTC1 PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.055e-22
Identity = 75/257 (29.18%), Postives = 120/257 (46.69%), Query Frame = 2
Query:  116 WRATMEDAHAAYPDLDSSTS--FFGVYDGHGGKAVAKFCAKYLH----QQVLKHEAYSAGDLVTSAQKAFLRMDEMMRGQRGWRELAILGDKMDKFSGMIEGFIWSPKGGEANDHFDDWTSEEGPHSDFHGPTSGSTACVAIIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFIQVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLFSQE 868
            +R TMED H    +  S     +F V+DGH G   +K+C K+LH    Q +L  E     D++  +   FL +DE +  +       ++G+     +  +    W     E  D   D + +   H                   ++L  AN GDSR VL R G ++ L+ DHK    +E  R+ +AGG I   RVNG L + R++GD  F           +V  +P  +++E+  +D+FL++ACDG+WD +  Q+
Sbjct:   31 FRRTMEDVHTYVKNFASRLDWGYFAVFDGHAGIQASKWCGKHLHTIIEQNILADETRDVRDVLNDS---FLAIDEEINTK-------LVGNS--GCTAAVCVLRW-----ELPDSVSDDSMDLAQHQ------------------RKLYTANVGDSRIVLFRNGNSIRLTYDHKASDTLEMQRVEQAGGLIMKSRVNGMLAVTRSLGDKFF---------DSLVVGSPFTTSVEITSEDKFLILACDGLWDVIDDQD 243          
BLAST of CV884346 vs. ExPASy Swiss-Prot
Match: P2C76_ARATH (Probable protein phosphatase 2C 76 OS=Arabidopsis thaliana GN=At5g53140 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.377e-22
Identity = 82/267 (30.71%), Postives = 125/267 (46.82%), Query Frame = 2
Query:   95 GLSSMQGWRATMEDAHAAYPDLDSST------SFFGVYDGHGGKAVAKFCAKYLHQQVLKHEAYSAGDLVTSAQKAFLRMDEMMRGQRGWRELAILGDKMDKFSGMIEGFIWSPKGGEANDHFDDWTSEEGPHSDFHGPTSGSTACVAIIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFIQ---VGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLFSQE 868
            G  S +G R+TMED +    D+ +ST        FG++DGHGG   A++  ++L   ++KH  +   D   +  + + + D           +A L  + D +                    DD                GSTA  A++    L VAN GDSR ++S+ G+A+ LS DHKP+   E+ RI  AGG I      RV G L ++RA G      N+ L   KQ V A P+I  +E+  + E LV+A DG+WD + +++
Sbjct:  103 GYCSFRGKRSTMEDFY----DIKASTIEGQAVCMFGIFDGHGGSRAAEYLKEHLFNNLMKHPQFLT-DTKLALNETYKQTD-----------VAFLESEKDTYR-------------------DD----------------GSTASAAVLVGNHLYVANVGDSRTIVSKAGKAIALSDDHKPNRSDERKRIESAGGVIMWAGTWRVGGVLAMSRAFG------NRML---KQFVVAEPEIQDLEIDHEAELLVLASDGLWDVVPNED 309          
BLAST of CV884346 vs. ExPASy Swiss-Prot
Match: PPM1K_MOUSE (Protein phosphatase 1K, mitochondrial OS=Mus musculus GN=Ppm1k PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.799e-22
Identity = 91/271 (33.58%), Postives = 129/271 (47.60%), Query Frame = 2
Query:   80 ENVRYGLSSMQGWRATMEDAHAAYPDLDSSTSFFGVYDGHGGKAVAKFCAKYLHQQVLKHEAYSAGDLVTSAQKAFLRMDEMMRGQRGWRELAILGDKMDKFSGMIEGFIWSPKGGEANDHFDDWTSEEGPHSDFHGPTSGSTACVAIIRDK-QLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFI---QVGR--VNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCD-DDEFLVIACDGIWDCLFSQEL 871
            ENV  G +S+ G R   ED    +  L     +F VYDGHGG A A FC  ++ + V+        DL T    AFL +D+                                           + S     +D    TSG+TA VA++RD  +LVVA+ GDSR +L RKG+ + L+ DH P+ + EK+RI K GGF+    +G+  VNG L + R+IGD++ K +         V A P+ + I+L   DD FLV+  DGI   + SQE+
Sbjct:   93 ENV--GCASLIGKRKENEDRFG-FAQLTEEVLYFAVYDGHGGPAAADFCHTHMEKCVMDLLPREK-DLETVLTLAFLEIDKA------------------------------------------FASYAHLSADASLLTSGTTATVALLRDGVELVVASVGDSRALLCRKGKPMKLTTDHTPERKDEKERIKKFGGFVAWNSLGQPHVNGRLAMTRSIGDLDLKASG--------VIAEPETTRIKLYHADDSFLVLTTDGINFMVNSQEI 309          
BLAST of CV884346 vs. ExPASy Swiss-Prot
Match: P2C25_ARATH (Probable protein phosphatase 2C 25 OS=Arabidopsis thaliana GN=At2g30020 PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.799e-22
Identity = 88/283 (31.10%), Postives = 130/283 (45.94%), Query Frame = 2
Query:   38 STPKTEKFSEDGQNENVRYGLSSMQGWRATMEDAHAAYPDL--DSSTSFFGVYDGHGGKAVAKFCAKYLHQQVLKHEAYSAGDLVTSAQKAFLRMDEMMRGQRGWRELAILGDKMDKFSGMIEGFIWSPKGGEANDHFDDWTSEEGPHSDFHGPTSGSTACVAIIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFIQ----VGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLFSQE 868
            +TP+ E    + + E   Y +   +G R  MED  +A  +L  D   + FGVYDGHGG   A+F AK L + ++                      E + G+R   E+A           +  G++       A D    +  EE    D  G   GS    A++ +  LVV+NAGD R V+S  G A  LS DH+P  + E+ RI   GG++     V R+ GSL ++R IGD +          K+ V A P+     +  D EFL++A DG+WD + +QE
Sbjct:  124 ATPREE--CREVEREGDGYSVYCKRGRREAMEDRFSAITNLHGDRKQAIFGVYDGHGGVKAAEFAAKNLDKNIV----------------------EEVVGKRDESEIA---------EAVKHGYL-------ATDA--SFLKEE----DVKG---GSCCVTALVNEGNLVVSNAGDCRAVMSVGGVAKALSSDHRPSRDDERKRIETTGGYVDTFHGVWRIQGSLAVSRGIGDAQL---------KKWVIAEPETKISRIEHDHEFLILASDGLWDKVSNQE 348          
BLAST of CV884346 vs. ExPASy Swiss-Prot
Match: PPM1L_MOUSE (Protein phosphatase 1L OS=Mus musculus GN=Ppm1l PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.068e-22
Identity = 83/278 (29.86%), Postives = 130/278 (46.76%), Query Frame = 2
Query:   56 KFSEDGQNENVRYGLSSMQGWRATMEDAHAAYPDLDSST--SFFGVYDGHGGKAVAKFCAKYLHQQVLKHEAYSAGDLVTSAQKAFLRMDEMMRGQRGWRELAILGDKMDKFSGMIEGFIWSPKGGEANDHFDDWTSEEGPHSDFHGPTSGSTACVAIIRDKQLVVANAGDSRCVLSRK-GQALNLSKDHKPDLEVEKDRILKAGGFIQVG---RVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCD-DDEFLVIACDGIWDCLFSQE 868
            +FS+  + ++    + S+QG R  MED      DL + T  S FG++DGHGG+  A++    L + + +H      D     + + L    ++  Q     L+I  + ++K +   +                                +G+T  +A++ DK L VAN GDSR VL  K G A+ LS DHKP    E+ RI +AGGFI      RV G L ++R++GD   K          +V  +PDI T +L     EF+++A DG+WD   ++E
Sbjct:   81 EFSKTWEFKSHNVAVYSIQGRRDHMEDRFEVLTDLANKTHPSIFGIFDGHGGETAAEYVKSRLPEALKQH----LQDYEKDKENSVLTYQTILEQQI----LSIDREMLEKLTVSYD-------------------------------EAGTTCLIALLSDKDLTVANVGDSRGVLCDKDGNAIPLSHDHKPYQLKERKRIKRAGGFISFNGSWRVQGILAMSRSLGDYPLK-------NLNVVIPDPDILTFDLDKLQPEFMILASDGLWDAFSNEE 312          
The following BLAST results are available for this feature:
BLAST of CV884346 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
ILKAP_HUMAN2.775e-2330.77Integrin-linked kinase-associated serine/threonine... [more]
ILKAP_BOVIN4.734e-2330.40Integrin-linked kinase-associated serine/threonine... [more]
PPM1L_HUMAN8.074e-2330.22Protein phosphatase 1L OS=Homo sapiens GN=PPM1L PE... [more]
P2C55_ORYSJ8.074e-2329.93Probable protein phosphatase 2C 55 OS=Oryza sativa... [more]
P2C13_ORYSJ8.074e-2332.60Probable protein phosphatase 2C 13 OS=Oryza sativa... [more]
PP2C1_YEAST1.055e-2229.18Protein phosphatase 2C homolog 1 OS=Saccharomyces ... [more]
P2C76_ARATH1.377e-2230.71Probable protein phosphatase 2C 76 OS=Arabidopsis ... [more]
PPM1K_MOUSE1.799e-2233.58Protein phosphatase 1K, mitochondrial OS=Mus muscu... [more]
P2C25_ARATH1.799e-2231.10Probable protein phosphatase 2C 25 OS=Arabidopsis ... [more]
PPM1L_MOUSE3.068e-2229.86Protein phosphatase 1L OS=Mus musculus GN=Ppm1l PE... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_002G12_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_002_T3_G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884346 ID=CV884346; Name=CV884346; organism=Citrus sinensis; type=EST; length=871bp
CTCTCTGCTCAAAGTAAAGAAAATGGGGGTATATCTGAGCACCCCCAAGA
CTGAGAAGTTCTCGGAGGATGGTCAAAATGAGAATGTTCGATATGGATTG
TCGTCGATGCAGGGGTGGCGTGCGACCATGGAAGATGCTCATGCAGCTTA
TCCAGATTTGGACAGTTCTACATCTTTCTTTGGTGTTTATGATGGCCACG
GTGGTAAAGCAGTGGCCAAATTTTGTGCCAAGTATCTTCACCAGCAGGTG
CTCAAACATGAAGCTTATTCAGCTGGAGATTTAGTCACTTCAGCACAGAA
AGCTTTTCTCAGAATGGATGAGATGATGCGTGGACAAAGGGGATGGAGAG
AATTAGCTATACTGGGAGATAAAATGGACAAGTTTTCTGGCATGATTGAG
GGGTTCATATGGTCTCCTAAGGGTGGTGAAGCCAATGATCATTTTGACGA
TTGGACATCGGAGGAGGGTCCTCACTCAGATTTTCATGGACCAACTTCTG
GAAGTACAGCTTGCGTAGCAATCATTAGAGACAAGCAACTCGTGGTTGCA
AATGCTGGTGATTCTCGTTGTGTGTTATCGAGGAAGGGCCAGGCACTTAA
TCTATCTAAAGACCATAAGCCTGATCTTGAGGTTGAGAAAGATAGAATTC
TCAAAGCTGGTGGTTTTATACAAGTTGGACGTGTTAATGGAAGTTTAAAT
TTGGCGAGAGCTATTGGAGATGTGGAGTTCAAGCTAAACAAAAGTTTGCC
TGCTGAAAAACAGATTGTGACTGCCAATCCTGATATAAGTACTATTGAAC
TTTGTGATGACGATGAGTTTCTTGTCATAGCTTGTGATGGGATTTGGGAT
TGCCTTTTCAGTCAAGAACTT
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