CV884346

Overview
NameCV884346
Unique NameCV884346
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length871
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884346 vs. ExPASy Swiss-Prot
Match: PPM1L_BOVIN (Protein phosphatase 1L OS=Bos taurus GN=PPM1L PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 4.007e-22
Identity = 83/278 (29.86%), Postives = 130/278 (46.76%), Query Frame = 2
Query:   56 KFSEDGQNENVRYGLSSMQGWRATMEDAHAAYPDLDSST--SFFGVYDGHGGKAVAKFCAKYLHQQVLKHEAYSAGDLVTSAQKAFLRMDEMMRGQRGWRELAILGDKMDKFSGMIEGFIWSPKGGEANDHFDDWTSEEGPHSDFHGPTSGSTACVAIIRDKQLVVANAGDSRCVLSRK-GQALNLSKDHKPDLEVEKDRILKAGGFIQVG---RVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCD-DDEFLVIACDGIWDCLFSQE 868
            +FS+  + ++    + S+QG R  MED      DL + T  S FG++DGHGG+  A++    L + + +H      D     + + L    ++  Q     L+I  + ++K +   +                                +G+T  +A++ DK L VAN GDSR VL  K G A+ LS DHKP    E+ RI +AGGFI      RV G L ++R++GD   K          +V  +PDI T +L     EF+++A DG+WD   ++E
Sbjct:   81 EFSKTWEFKSHNVAVYSIQGRRDHMEDRFEVLMDLANKTHPSIFGIFDGHGGETAAEYVKSRLPEALKQH----LQDYEKDKENSVLSYQTILEQQI----LSIDREMLEKLTVSYD-------------------------------EAGTTCLIALLSDKDLTVANVGDSRGVLCDKDGNAIPLSHDHKPYQLKERKRIKRAGGFISFNGSWRVQGILAMSRSLGDYPLK-------NLNVVIPDPDILTFDLDKLQPEFMILASDGLWDAFSNEE 312          
BLAST of CV884346 vs. ExPASy Swiss-Prot
Match: PP2C1_SCHPO (Protein phosphatase 2C homolog 1 OS=Schizosaccharomyces pombe GN=ptc1 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 5.234e-22
Identity = 83/262 (31.68%), Postives = 112/262 (42.75%), Query Frame = 2
Query:  110 QGWRATMEDAHAAYPDL--DSSTSFFGVYDGHGGKAVAKFCAKYLHQQVLKHEAYSAGDLVTSAQKAFLRMDEMMRGQRGWRELAILGDKMDKFSGMIEGFIWSPKGGEANDHFDDWTSEEGPHSDFHGPTSGSTACVAIIRDKQ------LVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFIQVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCD-DDEFLVIACDGIWDCLFSQE 868
            Q WR +MED H    D   +    F  VYDGH G   + +C K LH+ +L+        LVT                          D MD      E F+      E N      T         H    G TA VA  R ++      L  ANAGD+R VL R G+A+ LS DHK     E  R+ + GG +   R+NG L + RA+GD            K++V+A+P  +   + +  DEF +IACDG+WD +  QE
Sbjct:   80 QRWRRSMEDTHICLYDFGGNQDDGFVAVYDGHAGIQASDYCQKNLHKVLLEKVRNEPDRLVT--------------------------DLMD------ETFV------EVNSKIAKAT---------HNDICGCTAAVAFFRYEKNRTRRVLYTANAGDARIVLCRDGKAIRLSYDHKGSDANESRRVTQLGGLMVQNRINGVLAVTRALGDTYL---------KELVSAHPFTTETRIWNGHDEFFIIACDGLWDVVSDQE 285          
BLAST of CV884346 vs. ExPASy Swiss-Prot
Match: P2C43_ARATH (Probable protein phosphatase 2C 43 OS=Arabidopsis thaliana GN=At3g17250 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 6.835e-22
Identity = 74/273 (27.11%), Postives = 120/273 (43.96%), Query Frame = 2
Query:   83 NVRYGLSSMQG-WRATMEDAHAAYPDLDSST-----------SFFGVYDGHGGKAVAKFCAKYLHQQVLKHEAYSAGDLVTSAQKAFLRMDEMMRGQRGWRELAILGDKMDKFSGMIEGFIWSPKGGEANDHFDDWTSEEGPHSDFHGPTSGSTACVAIIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFIQVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLFSQ 865
            N+  G  + +G +R  MED H    DL               +F+GV+DGHGG   +++  +       +   +     V  +    L + E+    R    LA L  + ++                                     + G+TA  A++  + L+VAN GD R VL RKG+A+++S DHK   E E+ R+   GG+ +   + G L + RA+GD   K    L      + ++PDI  + L ++DEFL++ CDG+WD + SQ
Sbjct:  115 NISSGSYADKGDYREYMEDEHICIDDLSDHLGSSFYRFPVPMAFYGVFDGHGGSDASQYIKENAMSLFFEDAVFRQSPSVVDS----LFLKELETSHREAYRLADLAMEDERIVSS---------------------------------SCGTTALTALVIGRHLMVANVGDCRAVLCRKGKAVDMSFDHKSTFEPERRRVEDLGGYFEGEYLYGDLAVTRALGDWSIKRFSPLGESLSPLISDPDIQQMILTEEDEFLIMGCDGVWDVMTSQ 350          
BLAST of CV884346 vs. ExPASy Swiss-Prot
Match: PPM1K_HUMAN (Protein phosphatase 1K, mitochondrial OS=Homo sapiens GN=PPM1K PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.523e-21
Identity = 89/271 (32.84%), Postives = 128/271 (47.23%), Query Frame = 2
Query:   80 ENVRYGLSSMQGWRATMEDAHAAYPDLDSSTSFFGVYDGHGGKAVAKFCAKYLHQQVLKHEAYSAGDLVTSAQKAFLRMDEMMRGQRGWRELAILGDKMDKFSGMIEGFIWSPKGGEANDHFDDWTSEEGPHSDFHGPTSGSTACVAIIRDK-QLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFI---QVGR--VNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCD-DDEFLVIACDGIWDCLFSQEL 871
            ENV  G +S  G R   ED    +  L     +F VYDGHGG A A FC  ++ + ++        +L T    AFL +D+                                           ++S     +D    TSG+TA VA++RD  +LVVA+ GDSR +L RKG+ + L+ DH P+ + EK+RI K GGF+    +G+  VNG L + R+IGD++ K +         V A P+   I+L   DD FLV+  DGI   + SQE+
Sbjct:   93 ENV--GCASQIGKRKENEDRFD-FAQLTDEVLYFAVYDGHGGPAAADFCHTHMEKCIMDLLPKEK-NLETLLTLAFLEIDKA------------------------------------------FSSHARLSADATLLTSGTTATVALLRDGIELVVASVGDSRAILCRKGKPMKLTIDHTPERKDEKERIKKCGGFVAWNSLGQPHVNGRLAMTRSIGDLDLKTSG--------VIAEPETKRIKLHHADDSFLVLTTDGINFMVNSQEI 309          
BLAST of CV884346 vs. ExPASy Swiss-Prot
Match: P2C53_ORYSJ (Probable protein phosphatase 2C 53 OS=Oryza sativa subsp. japonica GN=Os05g0592800 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.523e-21
Identity = 88/285 (30.88%), Postives = 125/285 (43.86%), Query Frame = 2
Query:   92 YGLSSMQGWRATMEDAHAAYP-----------------DLDSST-----SFFGVYDGHGGKAVAKFCAKYLHQQVLKHEAYSAGDLVTSAQKAFLRMDEMMRGQRGWRELAILGDKMDKFSGMIEGFIWSPKGGEANDHFDDWTSEEGPHSDFHGPTSGSTACVAIIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFI---QVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLFSQEL 871
            +GL S+ G R  MED +A  P                  LD ++      FF VYDGHGG  VA +C K +H  VL  E   A D    +  + L   ++      W +  +  D   +    + G   S     A D                  T GSTA VA++    ++VAN GDSR VL R  Q L LS DHKP+ E E  RI   GG +      RV G L ++R+IGD            K  +   P+++ +    DD+ L++A DG+WD + ++E+
Sbjct:  125 WGLESICGRRPEMEDDYAVVPRFFDLPLWMVAGDAAVDGLDRASFRLPAHFFAVYDGHGGVQVANYCRKRIHA-VLTEELRRAEDDACGSDLSGLESKKL------WEKAFV--DCFSRVDAEVGGNAASGAPPVAPD------------------TVGSTAVVAVVCSSHVIVANCGDSRAVLCRGKQPLPLSLDHKPNREDEYARIEALGGKVIQWNGYRVLGVLAMSRSIGDKYL---------KPYIIPVPEVTVVARAKDDDCLILASDGLWDVMSNEEV 373          
BLAST of CV884346 vs. ExPASy Swiss-Prot
Match: P2C56_ORYSJ (Probable protein phosphatase 2C 56 OS=Oryza sativa subsp. japonica GN=Os06g0526800/Os06g0526950 PE=2 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.989e-21
Identity = 84/274 (30.66%), Postives = 128/274 (46.72%), Query Frame = 2
Query:   62 SEDGQNENVRYGLSSMQGWRATMEDAHAAYPDL--DSSTSFFGVYDGHGGKAVAKFCAKYLHQQVLKHEAYSAGDLVTSAQKAFLRMDEMMRGQRGWRELAILGDKMDKFSGMIEGFIWSPKGGEANDHFDDWTSEEGPHSDFHGPTSGSTACVAIIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGG---FIQVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLFSQE 868
            SEDG+   + +  SS +G R +MED  +       + + S FGV+DGHGG   A++  ++L + ++ H      D   +  + FL+ D                D ++  S              +N   DD                GSTA  AI+    L V N GDSR V  + G+A+ LS+DHKP+ + E+ RI  AGG   F    RVNG L ++RA G      N++L   K  V A PDI    + +  E+L++A DG+WD + +++
Sbjct:   90 SEDGR---LSWDYSSFKGRRPSMEDRFSIKMTTINEQTVSLFGVFDGHGGSLAAEYLKEHLFENLVNHPELLR-DTKLAISQTFLKTD---------------ADFLESVS--------------SNPFRDD----------------GSTAVTAILVGNHLYVGNVGDSRVVALKAGKAVPLSEDHKPNRKDEQKRIEDAGGIVVFDDTWRVNGLLAMSRAFG------NRAL---KHYVKAEPDIQEKVVDESLEYLILATDGLWDVMRNED 305          
BLAST of CV884346 vs. ExPASy Swiss-Prot
Match: P2C50_ORYSJ (Probable protein phosphatase 2C 50 OS=Oryza sativa subsp. japonica GN=Os05g0537400 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.392e-21
Identity = 89/298 (29.87%), Postives = 132/298 (44.30%), Query Frame = 2
Query:   92 YGLSSMQGWRATMEDAHAAYP--------------DLDS----------STSFFGVYDGHGGKAVAKFCAKYLH---QQVLKHEAYSAGDLVTSAQK---------AFLRMDEMMRGQRGWRELAILGDKMDKFSGMIEGFIWSPKGGEANDHFDDWTSEEGPHSDFHGPTSGSTACVAIIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFI---QVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLFSQE 868
            +G +S +G  A MEDA AA P              DLD+              FGV+DGHGG  VA +C + +H    + LK    + G++     K          F R+D+ + G               + + ++ G      GGE     +  T+E            GSTA VA++    +VVAN GDSR VL R  + + LS DHKPD + E+ RI   GG +      RV+G L ++R+IGD            K  V   P++  +    DD+ L++A DG+WD + ++E
Sbjct:   61 WGCASTRGRSAEMEDASAAVPRFADVPVRLLASRRDLDALGLDADALRLPAHLFGVFDGHGGAEVANYCRERIHVVLSEELKRLGKNLGEMGEVDMKEHWDDVFTKCFQRVDDEVSG---------------RVTRVVNG------GGEVRS--EPVTAEN----------VGSTAVVALVCSSHVVVANCGDSRIVLCRGKEPVALSIDHKPDRKDERARIEAQGGKVIQWNGYRVSGILAMSRSIGDRYL---------KPFVIPKPEVMVVPRAKDDDCLILASDGLWDVVSNEE 316          
BLAST of CV884346 vs. ExPASy Swiss-Prot
Match: PPM1K_BOVIN (Protein phosphatase 1K, mitochondrial OS=Bos taurus GN=PPM1K PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.431e-21
Identity = 87/270 (32.22%), Postives = 125/270 (46.30%), Query Frame = 2
Query:   95 GLSSMQGWRATMEDAHAAYPDLDSSTSFFGVYDGHGGKAVAKFCAKYLHQQVL----KHEAYSAGDLVTSAQKAFLRMDEMMRGQRGWRELAILGDKMDKFSGMIEGFIWSPKGGEANDHFDDWTSEEGPHSDFHGPTSGSTACVAIIRDK-QLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFI---QVGR--VNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCD-DDEFLVIACDGIWDCLFSQEL 871
            G +S  G R   ED    +  L +   +F VYDGHGG A A FC  ++ + +L    K E     +L T    AFL +D+           A L                                           TSG+TA VA++RD  +LV+A+ GDSR +L RKG+ + L+ DH P+ + EK+RI K GGF+    +G+  VNG L + R++GD++ K +         V A P+   I+L   DD FLV+  DGI   + SQE+
Sbjct:   96 GSASQIGKRKENEDRFG-FAQLTNEVLYFAVYDGHGGPAAADFCHTHMEKCILDLLPKEE-----NLETVLTLAFLEIDKTFARHAHLSADATL------------------------------------------LTSGTTATVALLRDGIELVIASVGDSRAILCRKGKPMKLTIDHTPERKDEKERIKKCGGFVAWNSLGQPHVNGRLAMTRSLGDLDLKTSG--------VIAEPETKRIKLHHADDSFLVLTTDGINFMVNSQEI 309          
BLAST of CV884346 vs. ExPASy Swiss-Prot
Match: P2C06_ORYSJ (Probable protein phosphatase 2C 6 OS=Oryza sativa subsp. japonica GN=Os01g0583100 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.431e-21
Identity = 79/235 (33.62%), Postives = 112/235 (47.66%), Query Frame = 2
Query:  176 FFGVYDGHGGKAVAKFCAKYLHQQVLKHEAYSAGDLVTSAQKAFLRMDEMMRGQRGWRELAILGDKMDKFSGMIEGFIWSPKGGEANDHFDDWTSEEGPHSDFHGPTSGSTACVAIIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFI---QVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLFSQEL 871
            FFGVYDGHGG  VA +C + LH  +++  +   G  V+ A    +        ++ W +  +     D FS + E    +   GEA                    T GSTA VA+I    ++VAN GDSR VL R  Q + LS DHKP+ E E  RI   GG +      RV G L ++R+IGD            K  +   P+I+ +    DDE LV+A DG+WD + ++E+
Sbjct:  200 FFGVYDGHGGAQVANYCRERLHAALVEELSRIEGS-VSGANLGSVEF------KKKWEQAFV-----DCFSRVDEEVGGNASRGEA----------------VAPETVGSTAVVAVICSSHIIVANCGDSRAVLCRGKQPVPLSVDHKPNREDEYARIEAEGGKVIQWNGYRVFGVLAMSRSIGDRYL---------KPWIIPVPEITIVPRAKDDECLVLASDGLWDVMSNEEV 397          
BLAST of CV884346 vs. ExPASy Swiss-Prot
Match: P2C77_ARATH (Protein phosphatase 2C 77 OS=Arabidopsis thaliana GN=ABI2 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.786e-21
Identity = 83/282 (29.43%), Postives = 126/282 (44.68%), Query Frame = 2
Query:   92 YGLSSMQGWRATMEDAHAAYPD---------LDS----------STSFFGVYDGHGGKAVAKFCAKYLHQQVLKHEAYSAGDLVTSAQKAFLRMDEMMRGQRGWRELAILGDKMDKFSGMIEGFIWSPKGGEANDHFDDWTSEEGPHSDFHGPTSGSTACVAIIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFI---QVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIELCDDDEFLVIACDGIWDCLFSQEL 871
            YG++S+ G R  MED+ +  P          LD           S  FFGVYDGHGG  VA +C + +H  + +         +   +  F   D     Q  W++   L +   +    IE    +P+                        T GST+ VA++    + VAN GDSR VL R    L LS DHKPD + E  RI  AGG +      RV G L ++R+IGD   K +         V  +P+++++    +D+ L++A DG+WD + ++E+
Sbjct:  113 YGVTSICGRRPEMEDSVSTIPRFLQVSSSSLLDGRVTNGFNPHLSAHFFGVYDGHGGSQVANYCRERMHLALTEE--------IVKEKPEFCDGDTW---QEKWKKA--LFNSFMRVDSEIETVAHAPE------------------------TVGSTSVVAVVFPTHIFVANCGDSRAVLCRGKTPLALSVDHKPDRDDEAARIEAAGGKVIRWNGARVFGVLAMSRSIGDRYLKPS---------VIPDPEVTSVRRVKEDDCLILASDGLWDVMTNEEV 348          
The following BLAST results are available for this feature:
BLAST of CV884346 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
PPM1L_BOVIN4.007e-2229.86Protein phosphatase 1L OS=Bos taurus GN=PPM1L PE=2... [more]
PP2C1_SCHPO5.234e-2231.68Protein phosphatase 2C homolog 1 OS=Schizosaccharo... [more]
P2C43_ARATH6.835e-2227.11Probable protein phosphatase 2C 43 OS=Arabidopsis ... [more]
PPM1K_HUMAN1.523e-2132.84Protein phosphatase 1K, mitochondrial OS=Homo sapi... [more]
P2C53_ORYSJ1.523e-2130.88Probable protein phosphatase 2C 53 OS=Oryza sativa... [more]
P2C56_ORYSJ1.989e-2130.66Probable protein phosphatase 2C 56 OS=Oryza sativa... [more]
P2C50_ORYSJ3.392e-2129.87Probable protein phosphatase 2C 50 OS=Oryza sativa... [more]
PPM1K_BOVIN4.431e-2132.22Protein phosphatase 1K, mitochondrial OS=Bos tauru... [more]
P2C06_ORYSJ4.431e-2133.62Probable protein phosphatase 2C 6 OS=Oryza sativa ... [more]
P2C77_ARATH5.786e-2129.43Protein phosphatase 2C 77 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_002G12_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_002_T3_G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884346 ID=CV884346; Name=CV884346; organism=Citrus sinensis; type=EST; length=871bp
CTCTCTGCTCAAAGTAAAGAAAATGGGGGTATATCTGAGCACCCCCAAGA
CTGAGAAGTTCTCGGAGGATGGTCAAAATGAGAATGTTCGATATGGATTG
TCGTCGATGCAGGGGTGGCGTGCGACCATGGAAGATGCTCATGCAGCTTA
TCCAGATTTGGACAGTTCTACATCTTTCTTTGGTGTTTATGATGGCCACG
GTGGTAAAGCAGTGGCCAAATTTTGTGCCAAGTATCTTCACCAGCAGGTG
CTCAAACATGAAGCTTATTCAGCTGGAGATTTAGTCACTTCAGCACAGAA
AGCTTTTCTCAGAATGGATGAGATGATGCGTGGACAAAGGGGATGGAGAG
AATTAGCTATACTGGGAGATAAAATGGACAAGTTTTCTGGCATGATTGAG
GGGTTCATATGGTCTCCTAAGGGTGGTGAAGCCAATGATCATTTTGACGA
TTGGACATCGGAGGAGGGTCCTCACTCAGATTTTCATGGACCAACTTCTG
GAAGTACAGCTTGCGTAGCAATCATTAGAGACAAGCAACTCGTGGTTGCA
AATGCTGGTGATTCTCGTTGTGTGTTATCGAGGAAGGGCCAGGCACTTAA
TCTATCTAAAGACCATAAGCCTGATCTTGAGGTTGAGAAAGATAGAATTC
TCAAAGCTGGTGGTTTTATACAAGTTGGACGTGTTAATGGAAGTTTAAAT
TTGGCGAGAGCTATTGGAGATGTGGAGTTCAAGCTAAACAAAAGTTTGCC
TGCTGAAAAACAGATTGTGACTGCCAATCCTGATATAAGTACTATTGAAC
TTTGTGATGACGATGAGTTTCTTGTCATAGCTTGTGATGGGATTTGGGAT
TGCCTTTTCAGTCAAGAACTT
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