CV884342

Overview
NameCV884342
Unique NameCV884342
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length895
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884342 vs. ExPASy Swiss-Prot
Match: DNJB6_CHICK (DnaJ homolog subfamily B member 6 OS=Gallus gallus GN=DNAJB6 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.437e-16
Identity = 41/85 (48.24%), Postives = 60/85 (70.59%), Query Frame = 1
Query:   55 YYEILGVSKNASQDDLKKAYRKAAIKNHPDKGGD-----PEKFKELAQAYEVLSDPEKREIYDQYGEDALKEXXXXXXXAHDPFD 294
            YYE+LGV K+AS +D+KKAYRK A+K HPDK  +      ++FK++A+AYEVLSD +KR+IYD++G++ L           +PF+
Sbjct:    4 YYEVLGVQKHASAEDIKKAYRKLALKWHPDKNPENKEEAEQQFKQVAEAYEVLSDAKKRDIYDRFGKEGLINGGGGGSHHDNPFE 88          
BLAST of CV884342 vs. ExPASy Swiss-Prot
Match: DNJB2_HUMAN (DnaJ homolog subfamily B member 2 OS=Homo sapiens GN=DNAJB2 PE=2 SV=3)

HSP 1 Score: 85.5001 bits (210), Expect = 4.489e-16
Identity = 42/70 (60.00%), Postives = 53/70 (75.71%), Query Frame = 1
Query:   55 YYEILGVSKNASQDDLKKAYRKAAIKNHPDKGGD-----PEKFKELAQAYEVLSDPEKREIYDQYGEDAL 249
            YYEIL V ++AS DD+KKAYR+ A++ HPDK  D      +KFKE+A+AYEVLSD  KREIYD+YG + L
Sbjct:    4 YYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREIYDRYGREGL 73          
BLAST of CV884342 vs. ExPASy Swiss-Prot
Match: DNAJ_CHLPN (Chaperone protein dnaJ OS=Chlamydia pneumoniae GN=dnaJ PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.489e-16
Identity = 40/67 (59.70%), Postives = 55/67 (82.09%), Query Frame = 1
Query:   55 YYEILGVSKNASQDDLKKAYRKAAIKNHPDKG-GD---PEKFKELAQAYEVLSDPEKREIYDQYGED 243
            YY ILG+SK AS +++KKAYRK A+K HPDK  GD    ++FKE+++AYEVLSDP+KR+ YD++G+D
Sbjct:    3 YYSILGISKTASAEEIKKAYRKLAVKYHPDKNPGDAAAEKRFKEVSEAYEVLSDPQKRDSYDRFGKD 69          
BLAST of CV884342 vs. ExPASy Swiss-Prot
Match: DJB12_MOUSE (DnaJ homolog subfamily B member 12 OS=Mus musculus GN=Dnajb12 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.489e-16
Identity = 42/66 (63.64%), Postives = 51/66 (77.27%), Query Frame = 1
Query:   55 YYEILGVSKNASQDDLKKAYRKAAIKNHPDKG---GDPEKFKELAQAYEVLSDPEKREIYDQYGED 243
            YYEILGVS++AS +DLKKAYRK A+K HPDK    G  E FK +  AY VLS+PEKR+ YDQ+G+D
Sbjct:  112 YYEILGVSRSASDEDLKKAYRKLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQYDQFGDD 177          
BLAST of CV884342 vs. ExPASy Swiss-Prot
Match: DNAJ_BORPE (Chaperone protein dnaJ OS=Bordetella pertussis GN=dnaJ PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.862e-16
Identity = 41/65 (63.08%), Postives = 49/65 (75.38%), Query Frame = 1
Query:   55 YYEILGVSKNASQDDLKKAYRKAAIKNHPDKGGD----PEKFKELAQAYEVLSDPEKREIYDQYG 237
            YYE+LGV+KNAS +DLKKAYRK A+K HPD+  D     EKFKE  +AYEVL D +KR  YD+YG
Sbjct:    6 YYEVLGVAKNASDEDLKKAYRKLAMKYHPDRNPDSKEAEEKFKEAKEAYEVLGDEQKRAAYDRYG 70          
BLAST of CV884342 vs. ExPASy Swiss-Prot
Match: DNAJ_BORPA (Chaperone protein dnaJ OS=Bordetella parapertussis GN=dnaJ PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.862e-16
Identity = 41/65 (63.08%), Postives = 49/65 (75.38%), Query Frame = 1
Query:   55 YYEILGVSKNASQDDLKKAYRKAAIKNHPDKGGD----PEKFKELAQAYEVLSDPEKREIYDQYG 237
            YYE+LGV+KNAS +DLKKAYRK A+K HPD+  D     EKFKE  +AYEVL D +KR  YD+YG
Sbjct:    6 YYEVLGVAKNASDEDLKKAYRKLAMKYHPDRNPDSKEAEEKFKEAKEAYEVLGDEQKRAAYDRYG 70          
BLAST of CV884342 vs. ExPASy Swiss-Prot
Match: DJB12_BOVIN (DnaJ homolog subfamily B member 12 OS=Bos taurus GN=DNAJB12 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.862e-16
Identity = 42/66 (63.64%), Postives = 50/66 (75.76%), Query Frame = 1
Query:   55 YYEILGVSKNASQDDLKKAYRKAAIKNHPDKG---GDPEKFKELAQAYEVLSDPEKREIYDQYGED 243
            YYEILGVS+ AS +DLKKAYRK A+K HPDK    G  E FK +  AY VLS+PEKR+ YDQ+G+D
Sbjct:  111 YYEILGVSRGASDEDLKKAYRKLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQYDQFGDD 176          
BLAST of CV884342 vs. ExPASy Swiss-Prot
Match: DNAJ_RALPJ (Chaperone protein dnaJ OS=Ralstonia pickettii (strain 12J) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.656e-16
Identity = 40/65 (61.54%), Postives = 49/65 (75.38%), Query Frame = 1
Query:   55 YYEILGVSKNASQDDLKKAYRKAAIKNHPDKGGD----PEKFKELAQAYEVLSDPEKREIYDQYG 237
            YYE+LGV KNAS D++KKAYRK A+K HPD+  D     +KFKE  +AYE+LSD EK+  YDQYG
Sbjct:    6 YYEVLGVGKNASDDEIKKAYRKLAMKYHPDRNPDSKEAEDKFKEAKEAYEMLSDAEKKAAYDQYG 70          
BLAST of CV884342 vs. ExPASy Swiss-Prot
Match: DNAJ_LISMF (Chaperone protein dnaJ OS=Listeria monocytogenes serotype 4b (strain F2365) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.656e-16
Identity = 40/64 (62.50%), Postives = 51/64 (79.69%), Query Frame = 1
Query:   55 YYEILGVSKNASQDDLKKAYRKAAIKNHPD---KGGDPEKFKELAQAYEVLSDPEKREIYDQYG 237
            YYE+LGVSK+AS D++KKAYRK + + HPD   + G  EKFKE+++AYE LSDP+KR  YDQYG
Sbjct:    6 YYEVLGVSKSASADEIKKAYRKLSKQYHPDINKEAGADEKFKEISEAYEALSDPQKRAQYDQYG 69          
BLAST of CV884342 vs. ExPASy Swiss-Prot
Match: DNAJ_LISMC (Chaperone protein dnaJ OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.656e-16
Identity = 40/64 (62.50%), Postives = 51/64 (79.69%), Query Frame = 1
Query:   55 YYEILGVSKNASQDDLKKAYRKAAIKNHPD---KGGDPEKFKELAQAYEVLSDPEKREIYDQYG 237
            YYE+LGVSK+AS D++KKAYRK + + HPD   + G  EKFKE+++AYE LSDP+KR  YDQYG
Sbjct:    6 YYEVLGVSKSASADEIKKAYRKLSKQYHPDINKEAGADEKFKEISEAYEALSDPQKRAQYDQYG 69          
The following BLAST results are available for this feature:
BLAST of CV884342 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNJB6_CHICK3.437e-1648.24DnaJ homolog subfamily B member 6 OS=Gallus gallus... [more]
DNJB2_HUMAN4.489e-1660.00DnaJ homolog subfamily B member 2 OS=Homo sapiens ... [more]
DNAJ_CHLPN4.489e-1659.70Chaperone protein dnaJ OS=Chlamydia pneumoniae GN=... [more]
DJB12_MOUSE4.489e-1663.64DnaJ homolog subfamily B member 12 OS=Mus musculus... [more]
DNAJ_BORPE5.862e-1663.08Chaperone protein dnaJ OS=Bordetella pertussis GN=... [more]
DNAJ_BORPA5.862e-1663.08Chaperone protein dnaJ OS=Bordetella parapertussis... [more]
DJB12_BOVIN5.862e-1663.64DnaJ homolog subfamily B member 12 OS=Bos taurus G... [more]
DNAJ_RALPJ7.656e-1661.54Chaperone protein dnaJ OS=Ralstonia pickettii (str... [more]
DNAJ_LISMF7.656e-1662.50Chaperone protein dnaJ OS=Listeria monocytogenes s... [more]
DNAJ_LISMC7.656e-1662.50Chaperone protein dnaJ OS=Listeria monocytogenes s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_002G09_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_002_T3_G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884342 ID=CV884342; Name=CV884342; organism=Citrus sinensis; type=EST; length=895bp
ATTTTTTAGTACAAGATGTTCGGAAGAGCGCCAAAGAAAAGCGATAACAC
AAAGTACTATGAGATTCTCGGAGTCTCAAAAAACGCTTCGCAAGATGATC
TGAAGAAGGCTTATAGGAAAGCCGCCATCAAAAACCATCCTGACAAGGGC
GGTGATCCTGAGAAGTTTAAAGAGTTGGCACAAGCGTATGAGGTTCTGAG
TGACCCAGAGAAGCGTGAAATATATGATCAATACGGCGAGGATGCGCTTA
AAGAGGGAATGGGTGGTGGTGGTGGTGCCCATGACCCATTCGACATATTC
CAATCCTTCTTCGGTGGCAGCCCATTTGGTGGTGGGAGCAGCAGAGGAAG
AAGGCAAAGGAGGGGAGAGGATGTAATCCATCCCCTCAAGGTTTCTTTGG
AGGATCTCTACAATGGGACATCTAAGAAGCTCTCGCTCTCCCGCAATGTA
ATCTGCACCAAGTGCAAAGGGAAGGGGTCTAAGTCAGGTGCATCAATGAA
ATGTTCTGGCTGCCAGGGATCTGGAATGAAAGTTTCAATAAGACACCTTG
GCCCCTCTATGATTCAACAAATGCAGCATCCTTGCAATGAGTGCAAGGGT
ACTGGAGAAACAATCAATGACAAGGATCGCTGCCCACAATGTAAGGGTGA
GAAGGTCATTCAGGAGAAAAAAGTCTTGGAGGTTATTGTTGAGAAGGGGA
TGCAAAATGGACAGAAGATTACGTTCCCTGGAGAAGCTGATGAAGCGCCC
GACACTGTCACAGGTGACATTGTATTTGTTCTACAACAGAAAGAGCACCC
GAAATTTAAGCGAAAGGGTGATGACCTATTTGTTGAGCACACCCTGTCAC
TGACAGAAGCTCTCTGTGGCTTTCAATTTGTAATAACTCATTTGG
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