CV884338

Overview
NameCV884338
Unique NameCV884338
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length862
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2338 contig Csv1_Contig2338:25..886. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884338 vs. ExPASy Swiss-Prot
Match: PME50_ARATH (Probable pectinesterase 50 OS=Arabidopsis thaliana GN=PME50 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.495e-26
Identity = 77/230 (33.48%), Postives = 111/230 (48.26%), Query Frame = -2
Query:  166 TFKSATIAVGGDGFIAQDLWIQNTAGPEKH----QAVALRVSADQSVINRCRIDAYQDTLYAHTNRQFYRDCDITGTVDFIFGNAAVVLQNCKIAARKPMSKQSNMVTAQGRTDPNQNTGTSIQKCEVIASSDLEPVKGSIRSYLGRPWKEYSRTVVMQSHIGDHIDPAGWSEWSGDFALKTLYYGEYLNRGPGAGTSKRVKWPGYHVITDPEEAKKFTVAELIGGGSWL 843
            T +SAT+ V  + F A  L I+NTA   K     QA+A+R++AD++    CR   +QDTL       F++DC I GT DFIFG  A +  N ++ A   +     ++TAQGR    +  G +   C+V  +            YLGR W  + + V   + +   ++P+GW E       KT++YGEY   GPG+   KRV    Y    D  E   F     I G +WL
Sbjct:  140 TVESATLIVWAEYFQAAHLTIKNTAPMPKPGSQGQALAMRINADKAAFYSCRFHGFQDTLCDDKGNHFFKDCYIEGTYDFIFGRGASLYLNTQLHA---VGDGLRVITAQGRQSATEQNGYTFVHCKVTGT--------GTGIYLGRSWMSHPKVVYAFTEMTSVVNPSGWRENLNRGYDKTVFYGEYKCFGPGSHLEKRVP---YTQDIDKNEVTPFLTLGYIKGSTWL 355          
BLAST of CV884338 vs. ExPASy Swiss-Prot
Match: PME68_ARATH (Probable pectinesterase 68 OS=Arabidopsis thaliana GN=PME68 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.107e-24
Identity = 68/232 (29.31%), Postives = 113/232 (48.71%), Query Frame = -2
Query:  166 TFKSATIAVGGDGFIAQDLWIQNTA-----GPEKHQAVALRVSADQSVINRCRIDAYQDTLYAHTNRQFYRDCDITGTVDFIFGNAAVVLQNCKIAARKPMSKQSNMVTAQGRTDPNQNTGTSIQKCEVIASSDLEPVKGSIRSYLGRPWKEYSRTVVMQSHIGDHIDPAGWSEWS-GDFALKTLYYGEYLNRGPGAGTSKRVKWPGYHVITDPEEAKKFTVAELIGGGSWL 843
            T+++A++ V  + F A+++   NTA     G +  QAVA R+S D++  + C     QDTL     R ++++C I G++DFIFGN   + ++C++ +   ++ +   + A GRT P + TG +   C V  +  L         Y+GR   +YSR V   ++    +   GW +W       KT ++G Y   GPGA  ++ V W       D E A  F     + G  W+
Sbjct:  141 TYQTASVTVYANYFTARNISFTNTAPAPLPGMQGWQAVAFRISGDKAFFSGCGFYGAQDTLCDDAGRHYFKECYIEGSIDFIFGNGRSMYKDCELHS---IASRFGSIAAHGRTCPEEKTGFAFVGCRVTGTGPL---------YVGRAMGQYSRIVYAYTYFDALVAHGGWDDWDHKSNKSKTAFFGVYNCYGPGAAATRGVSWAR---ALDYESAHPFIAKSFVNGRHWI 357          
BLAST of CV884338 vs. ExPASy Swiss-Prot
Match: PME67_ARATH (Probable pectinesterase 67 OS=Arabidopsis thaliana GN=PME67 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 9.373e-24
Identity = 70/229 (30.57%), Postives = 108/229 (47.16%), Query Frame = -2
Query:  166 SATIAVGGDGFIAQDLWIQNTAG-----PEKHQAVALRVSADQSVINRCRIDAYQDTLYAHTNRQFYRDCDITGTVDFIFGNAAVVLQNCKI-AARKPMSKQSNMVTAQGRTDPNQNTGTSIQKCEVIASSDLEPVKGSIRSYLGRPWKEYSRTVVMQSHIGDHIDPAGWSEWSGDFALKTLYYGEYLNRGPGAGTSKRVKWPGYHVITDPEEAKKFTVAELIGGGSWL 834
            SAT  V  + F+A  + I+N A        ++Q+VA  V+AD+     C   +  +TL+ +  R +Y +C I G++DFIFG A  +  NC+I        K    +TA  R    + TG    + +V    ++         YLGR    YSR +  ++++   + P GW+ WS   + + LY+GEY   GPGA   KR  W         +E + F   + I G SWL
Sbjct:  120 SATFKVEANHFVAFGISIRNDAPVGMAFTSENQSVAAFVAADKVAFYHCAFYSLHNTLFDNKGRHYYHECYIQGSIDFIFGRATSIFNNCEIFVISDKRVKPYGSITAHHRESAEEKTGYVFIRGKVYGIDEV---------YLGRAKGPYSRVIFAKTYLSKTVVPDGWTNWSYHGSTQNLYHGEYKCHGPGAERQKRSDWA---KDLTKQEVESFLSIDFIDGTSWL 336          
BLAST of CV884338 vs. ExPASy Swiss-Prot
Match: PME49_ARATH (Probable pectinesterase 49 OS=Arabidopsis thaliana GN=PME49 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.224e-23
Identity = 71/230 (30.87%), Postives = 109/230 (47.39%), Query Frame = -2
Query:  166 TFKSATIAVGGDGFIAQDLWIQNTAGPEKH----QAVALRVSADQSVINRCRIDAYQDTLYAHTNRQFYRDCDITGTVDFIFGNAAVVLQNCKIAARKPMSKQSNMVTAQGRTDPNQNTGTSIQKCEVIASSDLEPVKGSIRSYLGRPWKEYSRTVVMQSHIGDHIDPAGWSEWSGDFALKTLYYGEYLNRGPGAGTSKRVKWPGYHVITDPEEAKKFTVAELIGGGSWL 843
            T +SAT+ V    F+A +L I NT+   K     QA+A+R++ D++    CR   +QDTL       F+++C I GT DFIFG  A +    ++ A   +     ++ A  R    +  G S   C+V               YLGR W  + + V   + +   ++P+GW E       KT++YGEY+  GPG+  +KRV    +    D +EA +F     I G  WL
Sbjct:  140 TVESATLIVWATNFLAANLNIINTSPMPKPGTQGQALAMRINGDKAAFYNCRFYGFQDTLCDDRGNHFFKNCYIEGTYDFIFGRGASLYLTTQLHA---VGDGLRVIAAHNRQSTTEQNGYSFVHCKVTGV--------GTGIYLGRAWMSHPKVVYSYTEMSSVVNPSGWQENRVRAHDKTVFYGEYMCTGPGSHKAKRV---AHTQDIDNKEASQFLTLGYIKGSKWL 355          
BLAST of CV884338 vs. ExPASy Swiss-Prot
Match: PME10_ARATH (Putative pectinesterase 10 OS=Arabidopsis thaliana GN=PME10 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.088e-23
Identity = 69/216 (31.94%), Postives = 100/216 (46.30%), Query Frame = -2
Query:  145 IQNTAGPEKHQAVALRVSADQSVINRCRIDAYQDTLYAHTNRQFYRDCDITGTVDFIFGNAAVVLQNCKIAARK---PMSKQSNMVTAQGRTDPNQNTGTSIQKCEVIASSDLEPVKGSIRSYLGRPWKEYSRTVVMQSHIGDHIDPAGWSEWSGDFALKTLYYGEYLNRGPGAGTSKRVKWPGYHVITDPEEAKKFTVAELIGGGSWLKSTGVAY 783
            I +++ P K  AVA  +  D+  I     D +QDTLY    R +Y+ C I+G +DFIFG A  + + C +  R    P ++    +TAQGR  P    G   + C V+         GS ++ LGR WK YSR +  +S   D+I P GW  W        + + E+   G GA TSKRV W         ++  +FT    I    WL    + +
Sbjct:  137 IASSSSPTK-PAVAAMMLGDKYAIIDSSFDGFQDTLYDDYGRHYYKRCVISGGIDFIFGGAQSIFEGCTLKLRVGIYPPNEVYGTITAQGRDSPTDKGGFVFKDCTVM---------GSGKALLGRAWKSYSRVIFYRSMFSDNILPIGWDAWKAKGQEGHITFVEFGCTGVGADTSKRVPW---LTKASEKDVLQFTNLTFIDEEGWLSRLPIKF 339          
BLAST of CV884338 vs. ExPASy Swiss-Prot
Match: PME_ASPAC (Pectinesterase OS=Aspergillus aculeatus GN=pme1 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.354e-22
Identity = 73/197 (37.06%), Postives = 97/197 (49.24%), Query Frame = -2
Query:  271 DGSTTFKSATIAVGGDGFIAQDLWIQNTAGPEKHQAVALRVSADQSVINRCRIDAYQDTLYAHTNRQFYRDCDITGTVDFIFG-NAAVVLQNCKIAARKPMSKQSNMVTAQGRTDPNQNTGTSIQKCEVIASSDLEPVKGSIRSYLGRPWKEYSRTVVMQSHIGDHIDPAGWSEWSGDFA-LKTLYYGEYLNRGPGA 855
            D + TF++  +     G    +L I NT G   HQA+AL   ADQ     C    YQDTL A T  Q Y +  I G VDFIFG +A    QN  I  R      S  +TA GR+     +   I K  V A    +  +G+   YLGRPW EY+R V  Q+ + + I+  GW+EWS      + + +GEY N G G+
Sbjct:  110 DLTATFRNKAV-----GSQVYNLNIANTCGQACHQALALSAWADQQGYYGCNFTGYQDTLLAQTGNQLYINSYIEGAVDFIFGQHARAWFQNVDI--RVVEGPTSASITANGRSSETDTSYYVINKSTVAAKEGDDVAEGTY--YLGRPWSEYARVVFQQTSMTNVINSLGWTEWSTSTPNTEYVTFGEYANTGAGS 297          
BLAST of CV884338 vs. ExPASy Swiss-Prot
Match: PME63_ARATH (Putative pectinesterase 63 OS=Arabidopsis thaliana GN=PME63 PE=3 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 1.354e-22
Identity = 72/231 (31.17%), Postives = 111/231 (48.05%), Query Frame = -2
Query:  166 TFKSATIAVGGDGFIAQDLWIQNTA----GPEKH-QAVALRVSADQSVINRCRIDAYQDTLYAHTNRQFYRDCDITGTVDFIFGNAAVVLQNCKIAARKPMSKQSNMVTAQGRTDPNQNTGTSIQKCEVIASSDLEPVKGSIRSYLGRPWKEYSRTVVMQSHIGDHIDPAGWSEWSGDFALKTLYYGEYLNRGPGAGTSKRVKWPGYHVITDPEEAKKFTVAELIGGGSWL 843
            T  SAT+ V  D F+A ++ ++N+A    G  K  QA+++R+S +++    C+   YQDT+   T   F++DC I GT DFIFG+   +    ++     +     ++TA       + +G S   C+V  +            YLGR W  + + V   + +   ++P+GW E       KT++YGEY   G G+   KRVK   Y    D  EAK F     I G SWL
Sbjct:  116 TVDSATLIVLSDYFMAVNIILKNSAPMPDGKRKGAQALSMRISGNKAAFYNCKFYGYQDTICDDTGNHFFKDCYIEGTFDFIFGSGRSLYLGTQL---NVVGDGIRVITAHAGKSAAEKSGYSFVHCKVTGT--------GTGIYLGRSWMSHPKVVYAYTDMSSVVNPSGWQENREAGRDKTVFYGEYKCTGTGSHKEKRVK---YTQDIDDIEAKYFISLGYIQGSSWL 332          
BLAST of CV884338 vs. ExPASy Swiss-Prot
Match: PPME1_ARATH (Pectinesterase PPME1 OS=Arabidopsis thaliana GN=PPME1 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.954e-21
Identity = 67/231 (29.00%), Postives = 111/231 (48.05%), Query Frame = -2
Query:  166 TFKSATIAVGGDGFIAQDLWIQNTA----GPEKH-QAVALRVSADQSVINRCRIDAYQDTLYAHTNRQFYRDCDITGTVDFIFGNAAVVLQNCKIAARKPMSKQSNMVTAQGRTDPNQNTGTSIQKCEVIASSDLEPVKGSIRSYLGRPWKEYSRTVVMQSHIGDHIDPAGWSEWSGDFALKTLYYGEYLNRGPGAGTSKRVKWPGYHVITDPEEAKKFTVAELIGGGSWL 843
            T  SA++ +  D F+A ++ ++NTA    G  K  QA+++R+S + +    C+   +QDT+   T   F++DC + GT DFIFG+   +    ++     +     ++ A       + +G S   C+V  +       G I  YLGR W  + + V   + +   ++P GW E       KT++YGEY   GPG+  +KRV    +    D +EA +F     I G  WL
Sbjct:  139 TVDSASLIILSDYFMAVNIVVKNTAPAPDGKTKGAQALSMRISGNFAAFYNCKFYGFQDTICDDTGNHFFKDCYVEGTFDFIFGSGTSMYLGTQLHV---VGDGIRVIAAHAGKSAEEKSGYSFVHCKVTGTG------GGI--YLGRAWMSHPKVVYAYTEMTSVVNPTGWQENKTPAHDKTVFYGEYKCSGPGSHKAKRVP---FTQDIDDKEANRFLSLGYIQGSKWL 355          
BLAST of CV884338 vs. ExPASy Swiss-Prot
Match: PME55_ARATH (Probable pectinesterase 55 OS=Arabidopsis thaliana GN=PME55 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.427e-21
Identity = 58/170 (34.12%), Postives = 83/170 (48.82%), Query Frame = -2
Query:  247 AVALRVSADQSVINRCRIDAYQDTLYAHTNRQFYRDCDITGTVDFIFGNAAVVLQNC--KIAARKPMSKQSNMVTAQGRTDPNQNTGTSIQKCEVIASSDLEPVKGSIRSYLGRPWKEYSRTVVMQSHIGDHIDPAGWSEWSGDFALKTLYYGEYLNRGPGAGTSKRVKW 750
            AVA  +  D+S          QDTL+    R ++  C I G VDFI G+   + Q+C  ++   +     +  +TAQGRT+ N   G     C V          G  ++YLGR W+ YSR +   S++ D +DP GW EW+     K L Y E+   G G+ TS+R KW
Sbjct:  139 AVAAFIGGDKSAFYSVGFAGIQDTLWDSDGRHYFHRCTIQGAVDFILGSGQSIYQSCVIQVLGGQLGPGVTGYITAQGRTNANDANGFVFINCLV---------HGFGKAYLGRAWRPYSRVIFYNSNLTDVVDPLGWWEWNYQGYEKQLTYAEHGCFGSGSNTSRRAKW 299          
BLAST of CV884338 vs. ExPASy Swiss-Prot
Match: PME48_ARATH (Probable pectinesterase 48 OS=Arabidopsis thaliana GN=PME48 PE=2 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 7.427e-21
Identity = 67/231 (29.00%), Postives = 110/231 (47.62%), Query Frame = -2
Query:  166 TFKSATIAVGGDGFIAQDLWIQNTA----GPEKH-QAVALRVSADQSVINRCRIDAYQDTLYAHTNRQFYRDCDITGTVDFIFGNAAVVLQNCKIAARKPMSKQSNMVTAQGRTDPNQNTGTSIQKCEVIASSDLEPVKGSIRSYLGRPWKEYSRTVVMQSHIGDHIDPAGWSEWSGDFALKTLYYGEYLNRGPGAGTSKRVKWPGYHVITDPEEAKKFTVAELIGGGSWL 843
            T  SA++ +  D F+A ++ ++NTA    G  K  QA+++R+S + +    C+   +QDT+   T   F++DC + GT DFIFG+   +    ++     +     ++ A       + +G S   C+V  +       G I  YLGR W  + + V   + +   ++P GW E       KT++YGEY   GPG+  +KRV    +    D +EA  F     I G  WL
Sbjct:  139 TVDSASLIILSDYFMAVNIVVKNTAPAPDGKTKGAQALSMRISGNFAAFYNCKFYGFQDTICDDTGNHFFKDCYVEGTFDFIFGSGTSMYLGTQLHV---VGDGIRVIAAHAGKSAEEKSGYSFVHCKVTGTG------GGI--YLGRAWMSHPKVVYAYTEMTSVVNPTGWQENKTPAHDKTVFYGEYKCSGPGSHKAKRVP---FTQDIDDKEANCFLSLGYIQGSKWL 355          
The following BLAST results are available for this feature:
BLAST of CV884338 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
PME50_ARATH4.495e-2633.48Probable pectinesterase 50 OS=Arabidopsis thaliana... [more]
PME68_ARATH1.107e-2429.31Probable pectinesterase 68 OS=Arabidopsis thaliana... [more]
PME67_ARATH9.373e-2430.57Probable pectinesterase 67 OS=Arabidopsis thaliana... [more]
PME49_ARATH1.224e-2330.87Probable pectinesterase 49 OS=Arabidopsis thaliana... [more]
PME10_ARATH2.088e-2331.94Putative pectinesterase 10 OS=Arabidopsis thaliana... [more]
PME_ASPAC1.354e-2237.06Pectinesterase OS=Aspergillus aculeatus GN=pme1 PE... [more]
PME63_ARATH1.354e-2231.17Putative pectinesterase 63 OS=Arabidopsis thaliana... [more]
PPME1_ARATH1.954e-2129.00Pectinesterase PPME1 OS=Arabidopsis thaliana GN=PP... [more]
PME55_ARATH7.427e-2134.12Probable pectinesterase 55 OS=Arabidopsis thaliana... [more]
PME48_ARATH7.427e-2129.00Probable pectinesterase 48 OS=Arabidopsis thaliana... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_2_002G07_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_002_T3_G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884338 ID=CV884338; Name=CV884338; organism=Citrus sinensis; type=EST; length=862bp
CATAAGCATTATTGCATTAGCCTACAACATTTATGAAACTAGTACAGCAC
GTTACTCGGATTCATTCATTATTCAACTGATAGAAAGCAGTGGCAAATAC
AAGCTTAAAAGATATATGCTGAGCTGACATCACAGCCCCTCAGTATAAGC
AACTCCAGTTGATTTCAACCACGACCCTCCTCCGATAAGCTCAGCTACTG
TAAATTTTTTTGCTTCTTCTGGGTCTGTAATAACGTGATAGCCAGGCCAT
TTCACTCTTTTGCTAGTCCCAGCACCTGGCCCTCTATTCAGATACTCCCC
ATAATACAGTGTCTTCAGTGCAAAATCTCCACTCCATTCTGACCATCCAG
CTGGATCGATATGATCCCCGATGTGTGACTGCATTACAACTGTTCTCGAG
TATTCTTTCCAAGGCCGGCCCAAGTACGAACGGATCGAGCCCTTTACGGG
CTCCAGATCTGAGCTTGCTATGACTTCACATTTTTGGATCGAAGTCCCTG
TGTTTTGATTTGGGTCAGTCCGTCCTTGGGCTGTGACCATGTTGGATTGC
TTGCTCATGGGCTTTCTGGCCGCGATTTTGCAGTTCTGTAAGACAACCGC
TGCATTGCCAAATATGAAATCAACCGTGCCGGTGATGTCGCAATCTCTGT
AGAATTGGCGATTCGTGTGGGCGTAGAGCGTGTCTTGGTAGGCGTCAATG
CGGCAGCGGTTGATGACCGACTGATCAGCGCTGACCCGTAGTGCCACGGC
TTGATGTTTCTCTGGCCCGGCTGTGTTTTGGATCCACAAATCTTGGGCTA
TAAATCCATCACCACCAACAGCTATCGTTGCTGATTTGAAGGTTGTAGAT
CCGTCAACGACG
back to top