CV884338

Overview
NameCV884338
Unique NameCV884338
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length862
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884338 vs. ExPASy Swiss-Prot
Match: PME_ASPTU (Pectinesterase OS=Aspergillus tubingensis GN=pme1 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.655e-20
Identity = 66/191 (34.55%), Postives = 95/191 (49.74%), Query Frame = -2
Query:  271 KSATIAVGGDGFIAQDLWIQNTAGPEKHQAVALRVSADQSVINRCRIDAYQDTLYAHTNRQFYRDCDITGTVDFIFG-NAAVVLQNCKIAARKPMSKQSNMVTAQGRTDPNQNTGTSIQKCEVIASSDLEPVKGSIRSYLGRPWKEYSRTVVMQSHIGDHIDPAGWSEWSGDFA-LKTLYYGEYLNRGPGA 837
            ++AT+    +G    +L I NT G   HQA+A+   A +     C+   YQDTL A T  Q Y    I G VDFIFG +A      C I   +  S  S  +TA GR+  + ++   I K  V A+   +   G+   YLGRPW +Y+R    ++ + D I+  GW+EWS      + + + EY N G GA
Sbjct:  110 ETATLRNYAEGSAIYNLNIANTCGQACHQALAVSAYASEQGYYACQFTGYQDTLLAETGYQVYAGTYIEGAVDFIFGQHARAWFHECDIRVLEGPSSAS--ITANGRSSESDDSYYVIHKSTVAAADGNDVSSGTY--YLGRPWSQYARVCFQKTSMTDVINHLGWTEWSTSTPNTENVTFVEYGNTGTGA 296          
BLAST of CV884338 vs. ExPASy Swiss-Prot
Match: PME57_ARATH (Putative pectinesterase 57 OS=Arabidopsis thaliana GN=PME57 PE=3 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 1.655e-20
Identity = 49/90 (54.44%), Postives = 59/90 (65.56%), Query Frame = -2
Query:  574 TFKSATIAVGGDGFIAQDLWIQNTAGPEKHQAVALRVSADQSVINRCRIDAYQDTLYAHTNRQFYRDCDITGTVDFIFGNAAVVLQNCKI 843
            TF +AT A  GDGFI  D+  +NT  P K   V LRV+ D S+I RCR++ YQD LY H NRQ YR+  +  TVDFI GNAA V Q C+I
Sbjct:  152 TFNTATFASNGDGFIRVDMCFRNTTWPVKGPVVTLRVNGDMSIIYRCRVEEYQDALYPHKNRQCYREYFLMDTVDFICGNAAAVFQFCQI 241          
BLAST of CV884338 vs. ExPASy Swiss-Prot
Match: PME29_ARATH (Probable pectinesterase 29 OS=Arabidopsis thaliana GN=PME29 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 4.075e-19
Identity = 56/170 (32.94%), Postives = 79/170 (46.47%), Query Frame = -2
Query:  247 AVALRVSADQSVINRCRIDAYQDTLYAHTNRQFYRDCDITGTVDFIFGNAAVVLQNCKIAARKPMSKQ--SNMVTAQGRTDPNQNTGTSIQKCEVIASSDLEPVKGSIRSYLGRPWKEYSRTVVMQSHIGDHIDPAGWSEWSGDFALKTLYYGEYLNRGPGAGTSKRVKW 750
            AVA  +  D+S          QDTL+    R ++  C I G VDFIFG    + Q+C I       +   +  +TAQGRT+P    G     C V          G+  ++LGRPW+ YSR +   S++ D + P GW  W+       L + E+   G GA   +RVKW
Sbjct:  144 AVAALIGGDKSAFYSVGFAGIQDTLWDFDGRHYFHRCTIQGAVDFIFGTGQSIYQSCVIQVLGGQLEPGLAGYITAQGRTNPYDANGFIFINCLVY---------GTGMAFLGRPWRGYSRVIFYNSNLTDVVVPEGWDAWNFVGHENQLVFAEHGCFGSGANIGRRVKW 304          
BLAST of CV884338 vs. ExPASy Swiss-Prot
Match: PMEA_ERWCH (Pectinesterase A OS=Erwinia chrysanthemi GN=pemA PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.004e-17
Identity = 85/269 (31.60%), Postives = 121/269 (44.98%), Query Frame = -2
Query:  181 DGST--TFKSATIAVGGDGFIAQDLWIQN--------------TAGPEKHQAVALRV--SADQSVINRCRIDAYQDTLYAHTNRQFYRDCDITGTVDFIFGNAAVVLQNCKIAARKPMSKQSNMVT---AQGRTDPNQNTGTSIQKCEVIASSDLEPVKGSIRSY-LGRPW--------------KEYSRTVVMQSHIGDHIDPAGWSEWSG-DFALKTLYYG-------EYLNRGPGAGTSKRVKWPGYHVITDPEEAKKFTVAELIG 855
            DGS   T  S+TI +    F AQ L I+N              ++  +  QAVAL V  S D++      +  YQDTLY    R F+ DC I+GTVDFIFG+   +  NC + +R     +S  V+       T+ NQ  G  I    VI  SD  P K    SY LGRPW                  +TV + + + +HI   GW + SG D    T+++        EY + G GA  SK         +TD  +A ++T ++++G
Sbjct:  103 DGSKWGTAGSSTITISAKDFSAQSLTIRNDFDFPANQAKSDSDSSKIKDTQAVALYVTKSGDRAYFKDVSLVGYQDTLYVSGGRSFFSDCRISGTVDFIFGDGTALFNNCDLVSRYRADVKSGNVSGYLTAPSTNINQKYGLVITNSRVIRESDSVPAK----SYGLGRPWHPTTTFSDGRYADPNAIGQTVFLNTSMDNHI--YGWDKMSGKDKNGNTIWFNPEDSRFFEYKSYGAGAAVSK-----DRRQLTD-AQAAEYTQSKVLG 359          
BLAST of CV884338 vs. ExPASy Swiss-Prot
Match: PMEA_DICD3 (Pectinesterase A OS=Dickeya dadantii (strain 3937) GN=pemA PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.712e-17
Identity = 85/269 (31.60%), Postives = 121/269 (44.98%), Query Frame = -2
Query:  181 DGST--TFKSATIAVGGDGFIAQDLWIQN--------------TAGPEKHQAVALRV--SADQSVINRCRIDAYQDTLYAHTNRQFYRDCDITGTVDFIFGNAAVVLQNCKIAARKPMSKQSNMVT---AQGRTDPNQNTGTSIQKCEVIASSDLEPVKGSIRSY-LGRPW--------------KEYSRTVVMQSHIGDHIDPAGWSEWSG-DFALKTLYYG-------EYLNRGPGAGTSKRVKWPGYHVITDPEEAKKFTVAELIG 855
            DGS   T  S+TI +    F AQ L I+N              ++  +  QAVAL V  S D++      +  YQDTLY    R F+ DC I+GTVDFIFG+   +  NC + +R     +S  V+       T+ NQ  G  I    VI  SD  P K    SY LGRPW                  +TV + + + +HI   GW + SG D    T+++        EY + G GA  SK         +TD  +A ++T ++++G
Sbjct:  103 DGSKWGTAGSSTITISAKDFSAQSLTIRNDFDFPANQAKSDSDSSKIKDTQAVALYVTKSGDRAYFKDVSLVGYQDTLYVSGGRSFFSDCRISGTVDFIFGDGTALFNNCDLVSRYRADVKSGNVSGYLTAPSTNINQKYGLVITNSRVIRESDSVPAK----SYGLGRPWHPTTTFSDGRYADPNAIGQTVFLNTSMDNHI--YGWDKMSGKDKNGNTIWFNPEDSRFFEYKSYGAGATVSK-----DRRQLTD-AQAAEYTQSKVLG 359          
BLAST of CV884338 vs. ExPASy Swiss-Prot
Match: PME52_ARATH (Putative pectinesterase 52 OS=Arabidopsis thaliana GN=PME52 PE=2 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 8.498e-17
Identity = 57/200 (28.50%), Postives = 93/200 (46.50%), Query Frame = -2
Query:  160 AVALRVSADQSVINRCRIDAYQDTLYAHTNRQFYRDCDITGTVDFIFGNAAVVLQNCKI--AARKPMSKQS-NMVTAQGRTDPNQNTGTSIQKCEVIASSDLEPVKGSIRSYLGRPWKEYSRTVVMQSHIGDHIDPAGWSEWSGDFALKTLYYGEYLNRGPGAGTSKRVKWPGYHVITDPEEAKKFTVAELIGGGSWLKS 750
            AVA+ V  D+S    C     QDT++ +  R  +++C I G +DFIFG+   V ++C I   A    SK S   +TAQGR+  +  +G    +           V GS   YLGR +  +SR + +Q+ +   + P GW  W       +  Y E   +G G+  S+RV W     +      ++F+++  I    W+ +
Sbjct:  101 AVAISVYGDKSAFYNCDFLGLQDTVWDNLGRHHFKNCYIEGAIDFIFGSGQSVYEDCHINATAGALASKVSFGYITAQGRSSDSDPSGFVFLR---------GSVSGSTSVYLGRAYGPFSRVIFIQTDLSSVVHPEGWYSWHYGGYEMSFTYAEVECKGAGSDMSRRVPW--IDKLHSFYTKQQFSISNFIDQDQWISN 289          
BLAST of CV884338 vs. ExPASy Swiss-Prot
Match: PME66_ARATH (Probable pectinesterase 66 OS=Arabidopsis thaliana GN=PME66 PE=2 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 1.227e-15
Identity = 60/212 (28.30%), Postives = 87/212 (41.04%), Query Frame = -2
Query:  247 DGSTTFKSATIAVGGDGFIAQDLWIQNTAG------PEKHQAVALRVSADQSVINRCRIDAYQDTLYAHTNRQFYRDCDITGTVDFIFGNAAVVLQNCKIAARKPMSKQSN---MVTAQGRTDPNQNTGTSIQKCEVIASSDLEPVKGSIRSYLGRPWKEYSRTVVMQSHIGDHIDPAGWSEWSGDFALKTLYYGEYLNRGPGAGTSKRVKW 855
            D   T  SAT     D  +   +  +NT         E   AVA R+  D+ V+        QDTL+    R +Y+ C I+G +DFIFG    + + C +     +    N    +TA  R  P+   G     C          V G  ++ LGR W   +R +  +S + D + P GW  W      + L + E    G GA TS+RV W
Sbjct:  101 DHQATDISATFTAFADDIVISGITFKNTYNIVPNNKREIVPAVAARMLGDRYVVTDSSFVGLQDTLFDGKGRHYYKRCIISGGIDFIFGYGQSLFKECTLNMTLGIYAPDNPYGTITAHQRPSPSDEGGFVFSDC---------TVTGVGKTLLGRAWGSNARVIFDRSRLSDVVLPIGWDAWRAKGNERDLTFVEAGCTGAGADTSQRVPW 303          
The following BLAST results are available for this feature:
BLAST of CV884338 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
PME_ASPTU1.655e-2034.55Pectinesterase OS=Aspergillus tubingensis GN=pme1 ... [more]
PME57_ARATH1.655e-2054.44Putative pectinesterase 57 OS=Arabidopsis thaliana... [more]
PME29_ARATH4.075e-1932.94Probable pectinesterase 29 OS=Arabidopsis thaliana... [more]
PMEA_ERWCH1.004e-1731.60Pectinesterase A OS=Erwinia chrysanthemi GN=pemA P... [more]
PMEA_DICD31.712e-1731.60Pectinesterase A OS=Dickeya dadantii (strain 3937)... [more]
PME52_ARATH8.498e-1728.50Putative pectinesterase 52 OS=Arabidopsis thaliana... [more]
PME66_ARATH1.227e-1528.30Probable pectinesterase 66 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_002G07_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_002_T3_G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884338 ID=CV884338; Name=CV884338; organism=Citrus sinensis; type=EST; length=862bp
CATAAGCATTATTGCATTAGCCTACAACATTTATGAAACTAGTACAGCAC
GTTACTCGGATTCATTCATTATTCAACTGATAGAAAGCAGTGGCAAATAC
AAGCTTAAAAGATATATGCTGAGCTGACATCACAGCCCCTCAGTATAAGC
AACTCCAGTTGATTTCAACCACGACCCTCCTCCGATAAGCTCAGCTACTG
TAAATTTTTTTGCTTCTTCTGGGTCTGTAATAACGTGATAGCCAGGCCAT
TTCACTCTTTTGCTAGTCCCAGCACCTGGCCCTCTATTCAGATACTCCCC
ATAATACAGTGTCTTCAGTGCAAAATCTCCACTCCATTCTGACCATCCAG
CTGGATCGATATGATCCCCGATGTGTGACTGCATTACAACTGTTCTCGAG
TATTCTTTCCAAGGCCGGCCCAAGTACGAACGGATCGAGCCCTTTACGGG
CTCCAGATCTGAGCTTGCTATGACTTCACATTTTTGGATCGAAGTCCCTG
TGTTTTGATTTGGGTCAGTCCGTCCTTGGGCTGTGACCATGTTGGATTGC
TTGCTCATGGGCTTTCTGGCCGCGATTTTGCAGTTCTGTAAGACAACCGC
TGCATTGCCAAATATGAAATCAACCGTGCCGGTGATGTCGCAATCTCTGT
AGAATTGGCGATTCGTGTGGGCGTAGAGCGTGTCTTGGTAGGCGTCAATG
CGGCAGCGGTTGATGACCGACTGATCAGCGCTGACCCGTAGTGCCACGGC
TTGATGTTTCTCTGGCCCGGCTGTGTTTTGGATCCACAAATCTTGGGCTA
TAAATCCATCACCACCAACAGCTATCGTTGCTGATTTGAAGGTTGTAGAT
CCGTCAACGACG
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