CV884337

Overview
NameCV884337
Unique NameCV884337
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length858
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11173 contig Csv1_Contig11173:729..1586. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884337 vs. ExPASy Swiss-Prot
Match: ODPB_RHIME (Pyruvate dehydrogenase E1 component subunit beta OS=Rhizobium meliloti GN=pdhB PE=3 SV=2)

HSP 1 Score: 168.703 bits (426), Expect = 3.744e-41
Identity = 86/157 (54.78%), Postives = 113/157 (71.97%), Query Frame = -3
Query:  386 NELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKRACYR 856
            NE+LYG+SF V    LD  F LPIGKA+I R GKD T+ +F   +  ++KAA  L  +GI  E+I+LR+IRP+D  T+  SV+KT RLVTVEEG+PQ  VG EI   V++++F YLDAP+  IAG DVPMPYAANLE++A+P V ++V A K  CY+
Sbjct:  307 NEILYGQSFEVPK--LDD-FVLPIGKARIHRTGKDATLVSFGIGMTYAIKAAAELEAQGIDVEIIDLRTIRPMDLPTVIESVKKTGRLVTVEEGYPQSSVGTEIATRVMQQAFDYLDAPILTIAGKDVPMPYAANLEKLALPNVAEVVDAVKAVCYK 460          
BLAST of CV884337 vs. ExPASy Swiss-Prot
Match: ODPB_ASCSU (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Ascaris suum PE=1 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 5.406e-40
Identity = 87/154 (56.49%), Postives = 105/154 (68.18%), Query Frame = -3
Query:  398 NELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIE-ESFSYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKR 856
            NE+LYG  FPVS E     F LP G+AKI+R GKD+TI + S  V +SL AA+ LAK GI  EVINLR +RPLD  T+  SV KT  LVTVE G+P  GVGAEI A V E ++F YLD P+ R+ G DVPMPYA  LE  A+PQ  D+V+  K+
Sbjct:  203 NEILYGMKFPVSPEAQSPDFVLPFGQAKIQRPGKDITIVSLSIGVDVSLHAADELAKSGIDCEVINLRCVRPLDFQTVKDSVIKTKHLVTVESGWPNCGVGAEISARVTESDAFGYLDGPILRVTGVDVPMPYAQPLETAALPQPADVVKMVKK 356          
BLAST of CV884337 vs. ExPASy Swiss-Prot
Match: ODPB_CAEEL (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Caenorhabditis elegans GN=C04C3.3 PE=1 SV=2)

HSP 1 Score: 162.925 bits (411), Expect = 2.054e-39
Identity = 85/155 (54.84%), Postives = 110/155 (70.97%), Query Frame = -3
Query:  395 NELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIE-ESFSYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKRA 856
            NE+LYG+SFPV  EVL   F +PIGKAKIER G  VTI ++S+ V  SL+AA+ L   G+SAEVINLRS+RP D  +I  SV KT+ LV+VE G+P  G+G+EI A V+E + F  LDAP+ R+ G DVPMPY   LE  A+P  E +V+A K++
Sbjct:  194 NEILYGQSFPVGDEVLSDDFVVPIGKAKIERAGDHVTIVSYSRGVEFSLEAAKQLEAIGVSAEVINLRSLRPFDFESIRQSVHKTHHLVSVETGWPFAGIGSEIAAQVMESDVFDQLDAPLLRVTGVDVPMPYTQTLEAAALPTAEHVVKAVKKS 348          
BLAST of CV884337 vs. ExPASy Swiss-Prot
Match: ODPB_ZYMMO (Pyruvate dehydrogenase E1 component subunit beta OS=Zymomonas mobilis GN=pdhB PE=3 SV=2)

HSP 1 Score: 160.999 bits (406), Expect = 7.806e-39
Identity = 85/156 (54.49%), Postives = 108/156 (69.23%), Query Frame = -3
Query:  386 ELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKRACYR 853
            ELLYG++F V        F LPIGKA+I REGKDVTI ++S  V  +L AAE LAKEGI AEVI+LR++RPLD+ TI  S+ KTNR+VTVE+G+P   + +EI A  +EE F  LDAPV R+  AD P PYA NLE+  +   E I+ A ++ CYR
Sbjct:  309 ELLYGKTFDVPKM---DDFVLPIGKARIIREGKDVTIVSYSIGVSFALTAAEALAKEGIDAEVIDLRTLRPLDKETILQSLAKTNRIVTVEDGWPVCSISSEIAAIAMEEGFDNLDAPVLRVTNADTPTPYAENLEKKGLVNPEAIIEAVRKVCYR 461          
BLAST of CV884337 vs. ExPASy Swiss-Prot
Match: ODPB_RICFE (Pyruvate dehydrogenase E1 component subunit beta OS=Rickettsia felis GN=pdhB PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.332e-38
Identity = 83/159 (52.20%), Postives = 110/159 (69.18%), Query Frame = -3
Query:  380 NELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKRACYRSV 856
            NE+LYG SF V   +      +P G+AKI REG  VTI  FS  V L+L AA +L  + I  EVI+LR+I+PLD  TI  SV+KTNRLV VEEG+   GVGA I + V++E+F YLDAP+E ++G DVP+P+A NLE++A+P   D++ A K+ CY SV
Sbjct:  172 NEILYGHSFDVPETIEP----IPFGQAKILREGSSVTIVTFSIQVKLALDAANVLQNDNIDCEVIDLRTIKPLDTDTIIESVKKTNRLVIVEEGWFFAGVGASIASIVMKEAFDYLDAPIEIVSGKDVPLPFAVNLEKLALPSESDVIEAVKKVCYYSV 326          
BLAST of CV884337 vs. ExPASy Swiss-Prot
Match: ODPB_RICBR (Pyruvate dehydrogenase E1 component subunit beta OS=Rickettsia bellii (strain RML369-C) GN=pdhB PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.966e-38
Identity = 82/156 (52.56%), Postives = 109/156 (69.87%), Query Frame = -3
Query:  389 NELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKRACY 856
            NE+LYG SF +S  V      +P GKAK+ +EG  VTI  FS  V L+L AA IL  + I+ EVI+LR+I+PLD  TI  SV+KT RLV +EEG+   G+GA I A V++E+F YLDAPVE ++G DVP+PYA NLE++A+P   D++ A K+ CY
Sbjct:  172 NEILYGHSFDISENVEP----IPFGKAKVLKEGDSVTIVTFSIQVKLALDAANILQSDNINCEVIDLRTIKPLDIDTIIESVKKTGRLVVIEEGWFFAGIGATIAAIVMKEAFDYLDAPVEIVSGKDVPLPYAVNLEKLALPSEYDVINAVKKVCY 323          
BLAST of CV884337 vs. ExPASy Swiss-Prot
Match: ODPB_RICCN (Pyruvate dehydrogenase E1 component subunit beta OS=Rickettsia conorii GN=pdhB PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 1.127e-37
Identity = 81/159 (50.94%), Postives = 108/159 (67.92%), Query Frame = -3
Query:  380 NELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKRACYRSV 856
            NE+LYG SF V   +      +P G+AKI REG  VTI  FS  V L+L AA  +  + I  EVI+LR+I+PLD  TI  SV+KTNRLV VEEG+   GVGA I + V++E+F YLDAP+E ++G D+P+PYA NLE +A+P   D++ A K+ CY S+
Sbjct:  172 NEILYGHSFDVPKTIEP----IPFGQAKILREGSSVTIVTFSIQVKLALDAANFVQNDNIDCEVIDLRTIKPLDTETIIESVKKTNRLVVVEEGWFFAGVGASIASIVMKEAFDYLDAPIEIVSGKDLPLPYAVNLETLALPSESDVIEAVKKVCYYSI 326          
BLAST of CV884337 vs. ExPASy Swiss-Prot
Match: ODPB_RICPR (Pyruvate dehydrogenase E1 component subunit beta OS=Rickettsia prowazekii GN=pdhB PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 5.594e-37
Identity = 79/159 (49.69%), Postives = 111/159 (69.81%), Query Frame = -3
Query:  380 NELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKRACYRSV 856
            NE+LYG SF V  ++++    +P  KAKI +EG +VTI  FS  V L+L    IL  + I  E+I+LR+I+PLD  +I  SV+KTNRLV VEEG+   GVGA I + V++E+F YLDAP+E ++G DVP+PYA NLE++A+P   D++ A K+ CY S+
Sbjct:  172 NEILYGHSFDVP-DIIEP---IPFSKAKILKEGSNVTIVTFSIQVKLALDVVNILQNDNIDCELIDLRTIKPLDTDSIIESVKKTNRLVIVEEGWFFAGVGASIASIVMKEAFDYLDAPIEIVSGKDVPLPYAVNLEKLAMPSANDLIEAVKKVCYYSI 326          
BLAST of CV884337 vs. ExPASy Swiss-Prot
Match: ODPB_RICTY (Pyruvate dehydrogenase E1 component subunit beta OS=Rickettsia typhi GN=pdhB PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.628e-36
Identity = 78/159 (49.06%), Postives = 111/159 (69.81%), Query Frame = -3
Query:  380 NELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKRACYRSV 856
            NE+LYG SF V  ++++    +P  KAKI +EG +VTI  FS  V L+L    IL  + I  E+I+LR+I+PLD + I  SV+KTNRLV VEEG+   GVGA I + V++E+F YLDAP+E ++G DVP+PYA NLE++A+P   D++ A K+ CY ++
Sbjct:  172 NEILYGHSFDVP-DIIEP---IPFSKAKILKEGSNVTIVTFSIQVKLALDVVNILQNDNIDCELIDLRTIKPLDTNMIIESVKKTNRLVIVEEGWFFAGVGASIASIVMKEAFDYLDAPIEIVSGKDVPLPYAVNLEKLAMPSANDLIEAVKKVCYYTI 326          
BLAST of CV884337 vs. ExPASy Swiss-Prot
Match: ODPB_BACST (Pyruvate dehydrogenase E1 component subunit beta OS=Bacillus stearothermophilus GN=pdhB PE=1 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 8.952e-27
Identity = 64/140 (45.71%), Postives = 91/140 (65.00%), Query Frame = -3
Query:  398 EVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKR 817
            EV +  + +PIGKA I+REGKD+TI A+  +V  SLKAA  L KEGISAEV++LR+++PLD  TI  SV KT R + V+E   Q G+ A + A + E +   L+APV R+A  D   P+ A  E + +P  +D++  AK+
Sbjct:  183 EVPEGEYTIPIGKADIKREGKDITIIAYGAMVHESLKAAAELEKEGISAEVVDLRTVQPLDIETIIGSVEKTGRAIVVQEAQRQAGIAANVVAEINERAILSLEAPVLRVAAPDTVYPF-AQAESVWLPNFKDVIETAKK 321          
The following BLAST results are available for this feature:
BLAST of CV884337 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
ODPB_RHIME3.744e-4154.78Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_ASCSU5.406e-4056.49Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_CAEEL2.054e-3954.84Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_ZYMMO7.806e-3954.49Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_RICFE1.332e-3852.20Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_RICBR2.966e-3852.56Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_RICCN1.127e-3750.94Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_RICPR5.594e-3749.69Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_RICTY1.628e-3649.06Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_BACST8.952e-2745.71Pyruvate dehydrogenase E1 component subunit beta O... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_002G06_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_002_T7_G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884337 ID=CV884337; Name=CV884337; organism=Citrus sinensis; type=EST; length=858bp
CATCAATTTATTATTTCTGTAATCCCACATCACCTTCTCTTTTCTCACAG
TGACAATACAATTATCAAAAATCCGAAGAAAGAATTCAAACGACTCAGAT
TCACGCACCATTTAATGAAATATCATGGAACTGACAAAACTTGTAGCAGT
ACATTGATAATCAAACAATAAAACTCTGGTTTCTTGTTGATTTTCCACAT
TAACAAGAGAAAACTGAGCCACAAAATTTCCTGCTGTCATCAACAATCTC
CAATTATTTCATGATCAATTCCCCCAAAAAAGTGTTGAGAATGGGAAAAA
TGTACAATCCCTCTATTGTTCCAGGATCTGACAAAGCTTCAGGGCAGAAT
CAGTTCTTTTATGCTGCAGCAGCCATTGGCACAGATCTGTAGCATGCTCT
CTTGGCAGCTCGGACAATATCTTCAACCTGTGGGACAGCCATTCTCTCAA
GATTGGCTGCATATGGCATTGGAACATCAGCTCCAGCAATTCTCTCAACT
GGTGCATCAAGATAACTGAAGCTTTCCTCAATAACGGATGCACAGATTTC
GGCACCAACTCCATGCTGAGGGAACCCTTCTTCAACTGTTACCAGTCTGT
TAGTTTTTCTGACAGAAGCATTGATTGTGGATCTATCTAGTGGCCTAATT
GACCGCAGATTGATAACCTCAGCACTTATTCCTTCCTTTGCAAGTATCTC
AGCCGCCTTGAGTGAAAGGCCCACAATTTTTGAGAAAGCTGTAATGGTTA
CATCCTTTCCTTCTCTCTCAATTTTAGCTTTCCCAATTGGAAGGCAAAAA
CTGGAATCAAGAACTTCAGCTGATACCGGGAATGACTCACCATATAACAA
CTCATTTT
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