CV884337

Overview
NameCV884337
Unique NameCV884337
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length858
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11173 contig Csv1_Contig11173:729..1586. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884337 vs. ExPASy Swiss-Prot
Match: ODPB_CHAGL (Pyruvate dehydrogenase E1 component subunit beta OS=Chaetosphaeridium globosum GN=pdhB PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.880e-25
Identity = 53/147 (36.05%), Postives = 96/147 (65.31%), Query Frame = -3
Query:  392 FPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKRAC 832
            + ++  +++  + L + KA++ R G D+TI  +S++    L+AA++L  +G   E+I++ S++PLD  TI+ SVRKT++++ VEE     G+GA + A+++E+ F YLDAP++ ++  DVP PY+  LE + V Q   I++A +  C
Sbjct:  177 YNLNENLIEQEYLLCLEKAEVVRPGNDITILTYSRMRHHVLQAAKVLVNKGYDPEIIDILSLKPLDMGTISLSVRKTHKVLIVEECMRTGGIGASLRAAILEDLFDYLDAPIQCLSSQDVPTPYSGPLEELTVIQPNQIIQAVEEMC 323          
BLAST of CV884337 vs. ExPASy Swiss-Prot
Match: ACOB_RALEH (Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit beta OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=acoB PE=1 SV=3)

HSP 1 Score: 113.62 bits (283), Expect = 1.429e-24
Identity = 57/150 (38.00%), Postives = 91/150 (60.67%), Query Frame = -3
Query:  398 LYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKR 847
            LYG    +  EV + ++ +P G+A I R+GKDV+I  +  +V  +L+AA  LAKEGI AE+++LR++ PLD  T+  SV  T RLV V+E  P+  +  +I A V +++F  L A +E +     P+P++  LE + +P    I  AA++
Sbjct:  186 LYG----LEGEVPEGAYAIPFGEANIVRDGKDVSIVTYGLMVHRALEAAATLAKEGIEAEIVDLRTLSPLDMDTVLESVENTGRLVVVDEASPRCNIATDISAQVAQQAFGALKAGIEMVCPPHTPVPFSPTLEDLYIPSAAQIAAAARK 331          
BLAST of CV884337 vs. ExPASy Swiss-Prot
Match: ACOB_BACSU (Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit beta OS=Bacillus subtilis GN=acoB PE=3 SV=3)

HSP 1 Score: 113.235 bits (282), Expect = 1.867e-24
Identity = 57/141 (40.43%), Postives = 88/141 (62.41%), Query Frame = -3
Query:  413 SFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAANLERMAVPQVEDIV 835
            S+ +  EV +  + +P+GKA I+REG DVT+ A  K V  +L+AA  L++ GI AEV++ RS+ PLD   I  S+ KTNRL+ ++E  P+  +  +I A V ++ F  LDAP++RI     P+P++  LE   +P  + IV
Sbjct:  189 SYNMKGEVPEDYYTIPLGKADIKREGNDVTLFAVGKQVNTALEAAAQLSERGIEAEVLDPRSLSPLDEDAIFTSLEKTNRLIIIDEANPRCSIATDIAALVADKGFDLLDAPIKRITAPHTPVPFSPVLEDQYLPTPDKIV 329          
BLAST of CV884337 vs. ExPASy Swiss-Prot
Match: ODPB_STAES (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus epidermidis (strain ATCC 12228) GN=pdhB PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.438e-24
Identity = 58/139 (41.73%), Postives = 90/139 (64.75%), Query Frame = -3
Query:  401 EVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAK 817
            EV +  + + IGKA +++EG D+T+ ++  +V  SLKAAE L K+G S EVI+LR+++P+D  T+ ASV KT R V V+E   Q GVGA++ A + E +   L+AP+ R+A +D   P+    E + +P  +DI+  AK
Sbjct:  183 EVPEEEYKIDIGKANVKKEGNDITLISYGAMVQESLKAAEELEKDGYSVEVIDLRTVQPIDIDTLVASVEKTGRAVVVQEAQRQAGVGAQVAAELAERAILSLEAPIARVAASDTIYPF-TQAENVWLPNKKDIIEQAK 320          
BLAST of CV884337 vs. ExPASy Swiss-Prot
Match: ODPB_STAEQ (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=pdhB PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.438e-24
Identity = 58/139 (41.73%), Postives = 90/139 (64.75%), Query Frame = -3
Query:  401 EVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAK 817
            EV +  + + IGKA +++EG D+T+ ++  +V  SLKAAE L K+G S EVI+LR+++P+D  T+ ASV KT R V V+E   Q GVGA++ A + E +   L+AP+ R+A +D   P+    E + +P  +DI+  AK
Sbjct:  183 EVPEEEYKIDIGKANVKKEGNDITLISYGAMVQESLKAAEELEKDGYSVEVIDLRTVQPIDIDTLVASVEKTGRAVVVQEAQRQAGVGAQVAAELAERAILSLEAPIARVAASDTIYPF-TQAENVWLPNKKDIIEQAK 320          
BLAST of CV884337 vs. ExPASy Swiss-Prot
Match: ODPB_STAAW (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus aureus (strain MW2) GN=pdhB PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 9.264e-24
Identity = 59/139 (42.45%), Postives = 87/139 (62.59%), Query Frame = -3
Query:  401 EVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAK 817
            EV +  + + IGKA +++EG D++I  +  +V  S+KAAE L K+G S EVI+LR+++P+D  TI ASV KT R V V+E   Q GVGA + A + E +   L+AP+ R+A AD   P+    E + +P   DI+  AK
Sbjct:  183 EVPEEEYTIDIGKANVKKEGNDISIITYGAMVQESMKAAEELEKDGYSVEVIDLRTVQPIDVDTIVASVEKTGRAVVVQEAQRQAGVGAAVVAELSERAILSLEAPIGRVAAADTIYPF-TQAENVWLPNKNDIIEKAK 320          
BLAST of CV884337 vs. ExPASy Swiss-Prot
Match: ODPB_STAAU (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus aureus GN=pdhB PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 9.264e-24
Identity = 59/139 (42.45%), Postives = 87/139 (62.59%), Query Frame = -3
Query:  401 EVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAK 817
            EV +  + + IGKA +++EG D++I  +  +V  S+KAAE L K+G S EVI+LR+++P+D  TI ASV KT R V V+E   Q GVGA + A + E +   L+AP+ R+A AD   P+    E + +P   DI+  AK
Sbjct:  183 EVPEEEYTIDIGKANVKKEGNDISIITYGAMVQESMKAAEELEKDGYSVEVIDLRTVQPIDVDTIVASVEKTGRAVVVQEAQRQAGVGAAVVAELSERAILSLEAPIGRVAAADTIYPF-TQAENVWLPNKNDIIEKAK 320          
BLAST of CV884337 vs. ExPASy Swiss-Prot
Match: ODPB_STAAS (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus aureus (strain MSSA476) GN=pdhB PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 9.264e-24
Identity = 59/139 (42.45%), Postives = 87/139 (62.59%), Query Frame = -3
Query:  401 EVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAK 817
            EV +  + + IGKA +++EG D++I  +  +V  S+KAAE L K+G S EVI+LR+++P+D  TI ASV KT R V V+E   Q GVGA + A + E +   L+AP+ R+A AD   P+    E + +P   DI+  AK
Sbjct:  183 EVPEEEYTIDIGKANVKKEGNDISIITYGAMVQESMKAAEELEKDGYSVEVIDLRTVQPIDVDTIVASVEKTGRAVVVQEAQRQAGVGAAVVAELSERAILSLEAPIGRVAAADTIYPF-TQAENVWLPNKNDIIEKAK 320          
BLAST of CV884337 vs. ExPASy Swiss-Prot
Match: ODPB_STAAR (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus aureus (strain MRSA252) GN=pdhB PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 9.264e-24
Identity = 59/139 (42.45%), Postives = 87/139 (62.59%), Query Frame = -3
Query:  401 EVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAK 817
            EV +  + + IGKA +++EG D++I  +  +V  S+KAAE L K+G S EVI+LR+++P+D  TI ASV KT R V V+E   Q GVGA + A + E +   L+AP+ R+A AD   P+    E + +P   DI+  AK
Sbjct:  183 EVPEEEYTIDIGKANVKKEGNDISIITYGAMVQESMKAAEELEKDGYSVEVIDLRTVQPIDVDTIVASVEKTGRAVVVQEAQRQAGVGAAVVAELSERAILSLEAPIGRVAAADTIYPF-TQAENVWLPNKNDIIEKAK 320          
BLAST of CV884337 vs. ExPASy Swiss-Prot
Match: ODPB_STAAN (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus aureus (strain N315) GN=pdhB PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 9.264e-24
Identity = 59/139 (42.45%), Postives = 87/139 (62.59%), Query Frame = -3
Query:  401 EVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAK 817
            EV +  + + IGKA +++EG D++I  +  +V  S+KAAE L K+G S EVI+LR+++P+D  TI ASV KT R V V+E   Q GVGA + A + E +   L+AP+ R+A AD   P+    E + +P   DI+  AK
Sbjct:  183 EVPEEEYTIDIGKANVKKEGNDISIITYGAMVQESMKAAEELEKDGYSVEVIDLRTVQPIDVDTIVASVEKTGRAVVVQEAQRQAGVGAAVVAELSERAILSLEAPIGRVAAADTIYPF-TQAENVWLPNKNDIIEKAK 320          
The following BLAST results are available for this feature:
BLAST of CV884337 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
ODPB_CHAGL2.880e-2536.05Pyruvate dehydrogenase E1 component subunit beta O... [more]
ACOB_RALEH1.429e-2438.00Acetoin:2,6-dichlorophenolindophenol oxidoreductas... [more]
ACOB_BACSU1.867e-2440.43Acetoin:2,6-dichlorophenolindophenol oxidoreductas... [more]
ODPB_STAES2.438e-2441.73Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_STAEQ2.438e-2441.73Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_STAAW9.264e-2442.45Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_STAAU9.264e-2442.45Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_STAAS9.264e-2442.45Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_STAAR9.264e-2442.45Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_STAAN9.264e-2442.45Pyruvate dehydrogenase E1 component subunit beta O... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_002G06_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_002_T7_G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884337 ID=CV884337; Name=CV884337; organism=Citrus sinensis; type=EST; length=858bp
CATCAATTTATTATTTCTGTAATCCCACATCACCTTCTCTTTTCTCACAG
TGACAATACAATTATCAAAAATCCGAAGAAAGAATTCAAACGACTCAGAT
TCACGCACCATTTAATGAAATATCATGGAACTGACAAAACTTGTAGCAGT
ACATTGATAATCAAACAATAAAACTCTGGTTTCTTGTTGATTTTCCACAT
TAACAAGAGAAAACTGAGCCACAAAATTTCCTGCTGTCATCAACAATCTC
CAATTATTTCATGATCAATTCCCCCAAAAAAGTGTTGAGAATGGGAAAAA
TGTACAATCCCTCTATTGTTCCAGGATCTGACAAAGCTTCAGGGCAGAAT
CAGTTCTTTTATGCTGCAGCAGCCATTGGCACAGATCTGTAGCATGCTCT
CTTGGCAGCTCGGACAATATCTTCAACCTGTGGGACAGCCATTCTCTCAA
GATTGGCTGCATATGGCATTGGAACATCAGCTCCAGCAATTCTCTCAACT
GGTGCATCAAGATAACTGAAGCTTTCCTCAATAACGGATGCACAGATTTC
GGCACCAACTCCATGCTGAGGGAACCCTTCTTCAACTGTTACCAGTCTGT
TAGTTTTTCTGACAGAAGCATTGATTGTGGATCTATCTAGTGGCCTAATT
GACCGCAGATTGATAACCTCAGCACTTATTCCTTCCTTTGCAAGTATCTC
AGCCGCCTTGAGTGAAAGGCCCACAATTTTTGAGAAAGCTGTAATGGTTA
CATCCTTTCCTTCTCTCTCAATTTTAGCTTTCCCAATTGGAAGGCAAAAA
CTGGAATCAAGAACTTCAGCTGATACCGGGAATGACTCACCATATAACAA
CTCATTTT
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