CV884337

Overview
NameCV884337
Unique NameCV884337
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length858
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11173 contig Csv1_Contig11173:729..1586. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884337 vs. ExPASy Swiss-Prot
Match: ODPB_STAAM (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=pdhB PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 9.264e-24
Identity = 59/139 (42.45%), Postives = 87/139 (62.59%), Query Frame = -3
Query:  401 EVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAK 817
            EV +  + + IGKA +++EG D++I  +  +V  S+KAAE L K+G S EVI+LR+++P+D  TI ASV KT R V V+E   Q GVGA + A + E +   L+AP+ R+A AD   P+    E + +P   DI+  AK
Sbjct:  183 EVPEEEYTIDIGKANVKKEGNDISIITYGAMVQESMKAAEELEKDGYSVEVIDLRTVQPIDVDTIVASVEKTGRAVVVQEAQRQAGVGAAVVAELSERAILSLEAPIGRVAAADTIYPF-TQAENVWLPNKNDIIEKAK 320          
BLAST of CV884337 vs. ExPASy Swiss-Prot
Match: ODPB_STAAC (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus aureus (strain COL) GN=pdhB PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 9.264e-24
Identity = 59/139 (42.45%), Postives = 87/139 (62.59%), Query Frame = -3
Query:  401 EVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAK 817
            EV +  + + IGKA +++EG D++I  +  +V  S+KAAE L K+G S EVI+LR+++P+D  TI ASV KT R V V+E   Q GVGA + A + E +   L+AP+ R+A AD   P+    E + +P   DI+  AK
Sbjct:  183 EVPEEEYTIDIGKANVKKEGNDISIITYGAMVQESMKAAEELEKDGYSVEVIDLRTVQPIDVDTIVASVEKTGRAVVVQEAQRQAGVGAAVVAELSERAILSLEAPIGRVAAADTIYPF-TQAENVWLPNKNDIIEKAK 320          
BLAST of CV884337 vs. ExPASy Swiss-Prot
Match: ODPB_PORPU (Pyruvate dehydrogenase E1 component subunit beta OS=Porphyra purpurea GN=pdhB PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.580e-23
Identity = 54/144 (37.50%), Postives = 90/144 (62.50%), Query Frame = -3
Query:  401 FPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAK 832
            + +  E+ +  + +P+ KA++ R+GKD+TI  +S++     +A  +L  +G   EV++L S++PLD  +I+ SV+KT+R++ VEE     G+GAE+ A + E  F  LDAPV R++  D+P PY  +LE+  V Q   I+ A K
Sbjct:  177 YNLQEEIPEDEYLIPLDKAEVVRKGKDITILTYSRMRHHVTEALPLLLNDGYDPEVLDLISLKPLDIDSISVSVKKTHRVLIVEECMKTAGIGAELIAQINEHLFDELDAPVVRLSSQDIPTPYNGSLEQATVIQPHQIIDAVK 320          
BLAST of CV884337 vs. ExPASy Swiss-Prot
Match: ODPB_PORYE (Pyruvate dehydrogenase E1 component subunit beta OS=Porphyra yezoensis GN=pdhB PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 6.005e-23
Identity = 56/144 (38.89%), Postives = 88/144 (61.11%), Query Frame = -3
Query:  401 FPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAK 832
            + +  E+    + LP+ K +  R+GKD+TI  +S++    ++A   L KEG   EVI+L S++PLD  +I+ SV+KT++++ VEE     G+GAE+ A + E  F  LDAPV R++  D+P PY  +LE+  V Q   IV + K
Sbjct:  177 YNLQEEIPQEEYFLPLNKVEFVRKGKDITILTYSRMRHHVIQALPALLKEGYDPEVIDLISLKPLDIDSISISVKKTHKVLIVEECMKTAGIGAELIAQINEYLFDELDAPVVRLSSQDIPTPYNGSLEQATVIQPSQIVDSVK 320          
BLAST of CV884337 vs. ExPASy Swiss-Prot
Match: ODPB_CYAME (Pyruvate dehydrogenase E1 component subunit beta OS=Cyanidioschyzon merolae GN=pdhB PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 7.842e-23
Identity = 53/144 (36.81%), Postives = 87/144 (60.42%), Query Frame = -3
Query:  401 FPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAK 832
            + +  E+    + LP+ KA++ REG DVTI  +S+++   ++A + L  +G++ EVI+L S++P+D  T+  SV KT++ + VEE     G+ AE+ A +   +F  LDAP+ R++  DVP PY   LE+  + Q   IV A K
Sbjct:  178 YNLKQEIPKQEYVLPLDKAQVVREGSDVTIITYSRMLHHVMQAVKQLVAQGMNPEVIDLISLKPIDLETLVTSVSKTHKAIIVEECMQTGGIAAEVMAQIYSHAFDELDAPIRRLSSKDVPTPYNGYLEQACLVQPTQIVEAVK 321          
BLAST of CV884337 vs. ExPASy Swiss-Prot
Match: ODPB_BACSU (Pyruvate dehydrogenase E1 component subunit beta OS=Bacillus subtilis GN=pdhB PE=3 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 1.338e-22
Identity = 55/140 (39.29%), Postives = 89/140 (63.57%), Query Frame = -3
Query:  398 EVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKR 817
            EV +  + + +GKA ++REG D++I  +  +V  SLKAA+ L K+GISAEV++LR++ PLD  TI ASV KT R + V+E   Q G+ A + A + + +   L+APV R+A  D   P+ +  E + +P  +D++  A++
Sbjct:  183 EVPEEEYTIELGKADVKREGTDLSIITYGAMVHESLKAADELEKDGISAEVVDLRTVSPLDIDTIIASVEKTGRAIVVQEAQKQAGIAANVVAEINDRAILSLEAPVLRVAAPDTVFPF-SQAESVWLPNHKDVLETARK 321          
BLAST of CV884337 vs. ExPASy Swiss-Prot
Match: ODBB_BACSU (2-oxoisovalerate dehydrogenase subunit beta OS=Bacillus subtilis GN=bfmBAB PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.980e-22
Identity = 57/144 (39.58%), Postives = 88/144 (61.11%), Query Frame = -3
Query:  398 VSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVP-MPYAANLERMAVPQVEDIVRAAKR 826
            +  EV    + LPIGKA ++REG D+T+  +   V  +L+AAE L K+GISA V++LR++ PLD+  I  +  KT +++ V E   +  + +E+ A + E     LDAP++R+AG D+P MPYA  +E+  +    D V AA R
Sbjct:  180 IKGEVPADDYVLPIGKADVKREGDDITVITYGLCVHFALQAAERLEKDGISAHVVDLRTVYPLDKEAIIEAASKTGKVLLVTEDTKEGSIMSEVAAIISEHCLFDLDAPIKRLAGPDIPAMPYAPTMEKYFMVN-PDKVEAAMR 322          
BLAST of CV884337 vs. ExPASy Swiss-Prot
Match: ODPB_GRATL (Pyruvate dehydrogenase E1 component subunit beta OS=Gracilaria tenuistipitata var. liui GN=pdhB PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 5.083e-22
Identity = 53/139 (38.13%), Postives = 87/139 (62.59%), Query Frame = -3
Query:  401 EVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAK 817
            E+ +  + LP+ KA++ R+G DVTI  +S++    ++A   L  +G + EVI+L S++PLD ++I  S+ KT++L+ VEE     G+GAEI A + +  F +LDAP+ R++  D+P PY   LE+  V   + I+ A K
Sbjct:  182 ELPNDEYFLPLDKAELVRDGLDVTILTYSRMRHHVMQAVVDLVNDGYNPEVIDLISLKPLDITSIAQSLMKTHKLIIVEECMKTGGIGAEIIAQINDNYFDFLDAPIVRLSSQDIPTPYNGKLEKATVIYPQQIIEAVK 320          
BLAST of CV884337 vs. ExPASy Swiss-Prot
Match: ODBB_THET8 (2-oxoisovalerate dehydrogenase subunit beta OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=TTHA0230 PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 8.671e-22
Identity = 58/144 (40.28%), Postives = 86/144 (59.72%), Query Frame = -3
Query:  395 VSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKRA 826
            V  EV +  + LPIGKA + REGKD+T+  +  ++   L+AA  LAK G+SAEV++LR++ P D   +  SV KT R+V V +        +E+ A++ E+    L AP  R+ G D P PYA   +++ +P V  I+ AAKRA
Sbjct:  180 VKEEVPEEDYTLPIGKAALRREGKDLTLIGYGTVMPEVLQAAAELAKAGVSAEVLDLRTLMPWDYEAVMNSVAKTGRVVLVSDAPRHASFVSEVAATIAEDLLDMLLAPPIRVTGFDTPYPYAQ--DKLYLPTVTRILNAAKRA 321          
BLAST of CV884337 vs. ExPASy Swiss-Prot
Match: ODPB_STAPU (Pyruvate dehydrogenase E1 component subunit beta OS=Staurastrum punctulatum GN=pdhB PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.479e-21
Identity = 50/139 (35.97%), Postives = 89/139 (64.03%), Query Frame = -3
Query:  392 DSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKRAC 808
            D+ + + + KA+I R G D+TI  +S++    L+A + L  +G   E+I++ S++P+D  TI+ S++KT++++ VEE     G+GA + A+++E  F +LDAP+  ++  DVP PY+  LE + V Q   IV+A ++ C
Sbjct:  185 DNEYLVCLEKAEIVRPGTDITILTYSRMRHHVLQATKSLVYKGYDPEIIDIVSLKPVDLGTISTSIKKTHKVLIVEECMRTGGIGASLRATIMEHLFDFLDAPIMCLSSQDVPTPYSGPLEELTVIQPAQIVQAVEQLC 323          
The following BLAST results are available for this feature:
BLAST of CV884337 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
ODPB_STAAM9.264e-2442.45Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_STAAC9.264e-2442.45Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_PORPU1.580e-2337.50Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_PORYE6.005e-2338.89Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_CYAME7.842e-2336.81Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_BACSU1.338e-2239.29Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODBB_BACSU2.980e-2239.582-oxoisovalerate dehydrogenase subunit beta OS=Bac... [more]
ODPB_GRATL5.083e-2238.13Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODBB_THET88.671e-2240.282-oxoisovalerate dehydrogenase subunit beta OS=The... [more]
ODPB_STAPU1.479e-2135.97Pyruvate dehydrogenase E1 component subunit beta O... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_002G06_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_002_T7_G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884337 ID=CV884337; Name=CV884337; organism=Citrus sinensis; type=EST; length=858bp
CATCAATTTATTATTTCTGTAATCCCACATCACCTTCTCTTTTCTCACAG
TGACAATACAATTATCAAAAATCCGAAGAAAGAATTCAAACGACTCAGAT
TCACGCACCATTTAATGAAATATCATGGAACTGACAAAACTTGTAGCAGT
ACATTGATAATCAAACAATAAAACTCTGGTTTCTTGTTGATTTTCCACAT
TAACAAGAGAAAACTGAGCCACAAAATTTCCTGCTGTCATCAACAATCTC
CAATTATTTCATGATCAATTCCCCCAAAAAAGTGTTGAGAATGGGAAAAA
TGTACAATCCCTCTATTGTTCCAGGATCTGACAAAGCTTCAGGGCAGAAT
CAGTTCTTTTATGCTGCAGCAGCCATTGGCACAGATCTGTAGCATGCTCT
CTTGGCAGCTCGGACAATATCTTCAACCTGTGGGACAGCCATTCTCTCAA
GATTGGCTGCATATGGCATTGGAACATCAGCTCCAGCAATTCTCTCAACT
GGTGCATCAAGATAACTGAAGCTTTCCTCAATAACGGATGCACAGATTTC
GGCACCAACTCCATGCTGAGGGAACCCTTCTTCAACTGTTACCAGTCTGT
TAGTTTTTCTGACAGAAGCATTGATTGTGGATCTATCTAGTGGCCTAATT
GACCGCAGATTGATAACCTCAGCACTTATTCCTTCCTTTGCAAGTATCTC
AGCCGCCTTGAGTGAAAGGCCCACAATTTTTGAGAAAGCTGTAATGGTTA
CATCCTTTCCTTCTCTCTCAATTTTAGCTTTCCCAATTGGAAGGCAAAAA
CTGGAATCAAGAACTTCAGCTGATACCGGGAATGACTCACCATATAACAA
CTCATTTT
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