CV884337

Overview
NameCV884337
Unique NameCV884337
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length858
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11173 contig Csv1_Contig11173:729..1586. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884337 vs. ExPASy Swiss-Prot
Match: ODPB_LEIXX (Pyruvate dehydrogenase E1 component subunit beta OS=Leifsonia xyli subsp. xyli GN=pdhB PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.295e-21
Identity = 57/133 (42.86%), Postives = 86/133 (64.66%), Query Frame = -3
Query:  395 LPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKRA 793
            LP+  ++I R G D TI A++ +V ++L+AAEI A+EG S EV++LRS+ P+D + +  SV+KT RLV  +E      VG+E+ A V E++F  L+APV R+AG D P P  A LE + +P  + I+    R+
Sbjct:  203 LPLHASRIVRSGTDATIVAWAGMVPVALRAAEIAAEEGRSLEVVDLRSLAPIDYAPVLRSVQKTGRLVVAQEAPGIVSVGSEVAAVVGEKAFYSLEAPVLRVAGFDTPFP-PAKLESLYLPDADRILEVVDRS 334          
BLAST of CV884337 vs. ExPASy Swiss-Prot
Match: ODPB_ZYGCR (Pyruvate dehydrogenase E1 component subunit beta OS=Zygnema circumcarinatum GN=pdhB PE=3 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 5.620e-21
Identity = 49/147 (33.33%), Postives = 90/147 (61.22%), Query Frame = -3
Query:  392 FPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKRAC 832
            + +  ++ +  + + + KA++ R G D+TI  +S++    L+A + L  +G   E+I++ S++P D  TI ASV KT++++ VEE     G+GA + A+++E  F YLDAP+  ++  DVP PY++ LE + V Q   I++  ++ C
Sbjct:  177 YNLKEDLAEEEYLVCLEKAEVVRPGNDITILTYSRMRHNVLQATKSLVYKGYDPEIIDIVSLKPFDLGTIGASVCKTHKVLIVEECMRTGGIGATLRAAIMEHFFDYLDAPILCLSSQDVPTPYSSPLEELTVIQPNQIIQVVEQLC 323          
BLAST of CV884337 vs. ExPASy Swiss-Prot
Match: ODPB_CHAVU (Pyruvate dehydrogenase E1 component subunit beta OS=Chara vulgaris GN=pdhB PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.340e-21
Identity = 48/145 (33.10%), Postives = 88/145 (60.69%), Query Frame = -3
Query:  398 FPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKR 832
            + +   +    + +P+ KA++ R G  +TI  +S++    L+AA+ L ++G   E+I++ S++PLD  TI+ S+RKT++++ VEE     G+G  + ++++E  F +LD P+  ++  DVP PY   LE + V Q   IV AA++
Sbjct:  177 YNIKENIPQKEYLVPLEKAELVRSGNQITILTYSRMRYHVLQAAKTLIEKGYDPEIIDIISLKPLDMGTISTSLRKTHKVLIVEECMKTGGIGTTLKSAILESLFDFLDTPIMSLSSQDVPTPYNGFLEDLTVIQPSQIVEAAEK 321          
BLAST of CV884337 vs. ExPASy Swiss-Prot
Match: ODBB_THET2 (2-oxoisovalerate dehydrogenase subunit beta OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=TT_C1756 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.340e-21
Identity = 57/144 (39.58%), Postives = 85/144 (59.03%), Query Frame = -3
Query:  395 VSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKRA 826
            V  EV +  + L IGKA + REGKD+T+  +  ++   L+AA  LAK G+SAEV++LR++ P D   +  SV KT R+V V +        +E+ A++ E+    L AP  R+ G D P PYA   +++ +P V  I+ AAKRA
Sbjct:  180 VKEEVPEEDYTLSIGKAALRREGKDLTLIGYGTVMPEVLQAAAELAKAGVSAEVLDLRTLMPWDYEAVMNSVAKTGRVVLVSDAPRHASFVSEVAATIAEDLLDMLLAPPIRVTGFDTPYPYAQ--DKLYLPTVTRILNAAKRA 321          
BLAST of CV884337 vs. ExPASy Swiss-Prot
Match: ODPB_CYACA (Pyruvate dehydrogenase E1 component subunit beta OS=Cyanidium caldarium GN=pdhB PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.758e-20
Identity = 52/134 (38.81%), Postives = 81/134 (60.45%), Query Frame = -3
Query:  413 VLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAANLERMAVPQVEDIV 814
            V D  + LP+ KA++ R G DVTI  +S++    L A E L   G   E+I+L S++PLD  TI+ S++KT+++V VEE     G+ AE+ + +    +  LD+P  R++  DVP+PY  NLE+  + Q + IV
Sbjct:  183 VPDEEYYLPLDKAEVVRSGSDVTIVTYSRMRYHVLAAVEKLVLNGQDPEIIDLISLKPLDLHTISKSIKKTHKIVIVEECAQTGGIAAELISLINTYLYDELDSPAVRLSSKDVPIPYNGNLEKSTLIQPDQIV 316          
BLAST of CV884337 vs. ExPASy Swiss-Prot
Match: ODPB_MESVI (Pyruvate dehydrogenase E1 component subunit beta OS=Mesostigma viride GN=pdhB PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 4.028e-19
Identity = 46/145 (31.72%), Postives = 89/145 (61.38%), Query Frame = -3
Query:  398 FPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKR 832
            + + AEV D+ + LP+ KA+I R+G D+TI  +S++    ++A ++L ++G   E+I+L S++P D  TI  S++KT++++ VEE     G+   + + ++E  F  LD     ++  +VP PY+  LE +++ Q  DI+ + ++
Sbjct:  177 YNLKAEVPDNDYVLPLEKAEIVRQGNDITILTYSRMRYNVIQAVKVLVEKGYDPEIIDLISLKPFDIETIGKSIQKTHKVLIVEESMMTGGISNVLQSLILENFFDDLDNRPMCLSSPNVPTPYSGPLEEVSIVQTADIIESVEQ 321          
BLAST of CV884337 vs. ExPASy Swiss-Prot
Match: ODPB_ACHLA (Pyruvate dehydrogenase E1 component subunit beta OS=Acholeplasma laidlawii GN=pdhB PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.260e-19
Identity = 53/134 (39.55%), Postives = 79/134 (58.96%), Query Frame = -3
Query:  416 EVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAANLERMAVPQVEDI 817
            EV    + +PIGKAK+ ++G D+T+ A+  IV    KA +++  EGIS E+I+LR+I P+D  TI  SV+KT + + V E    +G  AE+   V E++F +L+A   R  G D+ +P A   E    PQ E I
Sbjct:  183 EVPAEMYEIPIGKAKVVKQGTDMTVVAWGSIVREVEKAVKLVEAEGISVEIIDLRTISPIDEETILNSVKKTGKFMVVTEAVKSYGPAAELITMVNEKAFFHLEAAPVRFTGFDITVPLARG-EHYHFPQPEKI 315          
BLAST of CV884337 vs. ExPASy Swiss-Prot
Match: ODPB_CHLAT (Pyruvate dehydrogenase E1 component subunit beta OS=Chlorokybus atmophyticus GN=pdhB PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.531e-18
Identity = 48/142 (33.80%), Postives = 83/142 (58.45%), Query Frame = -3
Query:  407 FPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRA 832
            + +  EV D+ + LP+ KA++ REG D+T+  +S+     ++A ++L +EG   EVI+L S++P D  TI  S++KT++++ VEE     G+   + + +I+  F  LDA    ++  +VP PY   LE   V Q  DI+ +
Sbjct:  177 YNLKGEVPDNDYLLPLEKAELVREGSDITVLTYSRQRYNVIQAVKVLVEEGYDPEVIDLISLKPFDMETIGKSIQKTHKVLIVEECMMTGGISNVLQSLIIDNFFDALDAAPLILSSPNVPTPYTGPLEEATVVQTIDIIES 318          
BLAST of CV884337 vs. ExPASy Swiss-Prot
Match: ODBB_PSEPU (2-oxoisovalerate dehydrogenase subunit beta OS=Pseudomonas putida GN=bkdA2 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.531e-18
Identity = 52/119 (43.70%), Postives = 72/119 (60.50%), Query Frame = -3
Query:  458 VLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYA 814
            V D  + +P+ KA I R G DV++  +   V ++  AAE   + G+ AEVI+LRS+ PLD  TI  SV+KT R V V E     G GAE+ + V E  F +L+AP+ER+ G D P P+A
Sbjct:  202 VPDGYYTVPLDKAAITRPGNDVSVLTYGTTVYVAQVAAE---ESGVDAEVIDLRSLWPLDLDTIVESVKKTGRCVVVHEATRTCGFGAELVSLVQEHCFHHLEAPIERVTGWDTPYPHA 317          
BLAST of CV884337 vs. ExPASy Swiss-Prot
Match: ODBB_PSEAE (2-oxoisovalerate dehydrogenase subunit beta OS=Pseudomonas aeruginosa GN=bkdA2 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.210e-17
Identity = 49/122 (40.16%), Postives = 75/122 (61.48%), Query Frame = -3
Query:  458 SAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYA 823
            +++V D  + +P+ KA I R G  +T+  +  +V ++  AA+   + G+ AE+I+LRS+ PLD  TI ASV+KT R V   E     G GAE+ + V E  F +L+AP+ER+ G D P P+A
Sbjct:  210 ASQVPDGYYKVPLDKAAIVRPGAALTVLTYGTMVYVAQAAAD---ETGLDAEIIDLRSLWPLDLETIVASVKKTGRCVIAHEATRTCGFGAELMSLVQEHCFHHLEAPIERVTGWDTPYPHA 328          
The following BLAST results are available for this feature:
BLAST of CV884337 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
ODPB_LEIXX3.295e-2142.86Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_ZYGCR5.620e-2133.33Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_CHAVU7.340e-2133.10Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODBB_THET27.340e-2139.582-oxoisovalerate dehydrogenase subunit beta OS=The... [more]
ODPB_CYACA4.758e-2038.81Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_MESVI4.028e-1931.72Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_ACHLA5.260e-1939.55Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_CHLAT1.531e-1833.80Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODBB_PSEPU1.531e-1843.702-oxoisovalerate dehydrogenase subunit beta OS=Pse... [more]
ODBB_PSEAE2.210e-1740.162-oxoisovalerate dehydrogenase subunit beta OS=Pse... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_002G06_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_002_T7_G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884337 ID=CV884337; Name=CV884337; organism=Citrus sinensis; type=EST; length=858bp
CATCAATTTATTATTTCTGTAATCCCACATCACCTTCTCTTTTCTCACAG
TGACAATACAATTATCAAAAATCCGAAGAAAGAATTCAAACGACTCAGAT
TCACGCACCATTTAATGAAATATCATGGAACTGACAAAACTTGTAGCAGT
ACATTGATAATCAAACAATAAAACTCTGGTTTCTTGTTGATTTTCCACAT
TAACAAGAGAAAACTGAGCCACAAAATTTCCTGCTGTCATCAACAATCTC
CAATTATTTCATGATCAATTCCCCCAAAAAAGTGTTGAGAATGGGAAAAA
TGTACAATCCCTCTATTGTTCCAGGATCTGACAAAGCTTCAGGGCAGAAT
CAGTTCTTTTATGCTGCAGCAGCCATTGGCACAGATCTGTAGCATGCTCT
CTTGGCAGCTCGGACAATATCTTCAACCTGTGGGACAGCCATTCTCTCAA
GATTGGCTGCATATGGCATTGGAACATCAGCTCCAGCAATTCTCTCAACT
GGTGCATCAAGATAACTGAAGCTTTCCTCAATAACGGATGCACAGATTTC
GGCACCAACTCCATGCTGAGGGAACCCTTCTTCAACTGTTACCAGTCTGT
TAGTTTTTCTGACAGAAGCATTGATTGTGGATCTATCTAGTGGCCTAATT
GACCGCAGATTGATAACCTCAGCACTTATTCCTTCCTTTGCAAGTATCTC
AGCCGCCTTGAGTGAAAGGCCCACAATTTTTGAGAAAGCTGTAATGGTTA
CATCCTTTCCTTCTCTCTCAATTTTAGCTTTCCCAATTGGAAGGCAAAAA
CTGGAATCAAGAACTTCAGCTGATACCGGGAATGACTCACCATATAACAA
CTCATTTT
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