CV884337
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CV884337 vs. ExPASy Swiss-Prot
Match: ODBB_DICDI (2-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Dictyostelium discoideum GN=bkdB PE=3 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 2.210e-17 Identity = 51/130 (39.23%), Postives = 79/130 (60.77%), Query Frame = -3 Query: 431 EVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKE-GISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAANLERMAVP 817 EV + +P+GKA+I +EGKD+TI + + + L+A + ++ GIS E+I+LR+I+P D T+ SV+KT R+V E G AEI A++ E F +L+AP++R+ G D P P E+ VP Sbjct: 228 EVPIGDYEIPLGKARIVKEGKDITIIGWGAQMRVLLQAVNMAEEKLGISCELIDLRTIQPWDVETVVESVKKTGRVVISHEAPKTGGWAAEISATIQERCFLHLEAPIQRVCGYDTPFPLI--FEKFYVP 355
BLAST of CV884337 vs. ExPASy Swiss-Prot
Match: DXS_DESAP (1-deoxy-D-xylulose-5-phosphate synthase OS=Desulforudis audaxviator (strain MP104C) GN=dxs PE=3 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.751e-14 Identity = 44/113 (38.94%), Postives = 68/113 (60.18%), Query Frame = -3 Query: 455 LPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAA 793 LPIG+A++ REG D+T+ A +V ++KAAEILA+ GI A V+N R ++PLD I R+T RL+T+EE G G+ + ++ + + D V+ I DV + + A Sbjct: 487 LPIGRAEVLREGDDITLIAIGNMVPTAVKAAEILAERGIEASVVNARFVKPLDEKCICHYARRTGRLITLEENVIAGGFGSAVQELLVAKGLT--DVRVQLIGLPDVFIEHGA 597
BLAST of CV884337 vs. ExPASy Swiss-Prot
Match: ODBB_HUMAN (2-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Homo sapiens GN=BCKDHB PE=1 SV=2) HSP 1 Score: 79.337 bits (194), Expect = 2.987e-14 Identity = 49/121 (40.50%), Postives = 72/121 (59.50%), Query Frame = -3 Query: 461 EVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKE--GISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPY 817 EV + +P+ +A++ +EG DVT+ A+ V + + A +AKE G+S EVI+LR+I P D TI SV KT RL+ E G +EI ++V EE F L+AP+ R+ G D P P+ Sbjct: 250 EVPIEPYNIPLSQAEVIQEGSDVTLVAWGTQVHVIREVAS-MAKEKLGVSCEVIDLRTIIPWDVDTICKSVIKTGRLLISHEAPLTGGFASEISSTVQEECFLNLEAPISRVCGYDTPFPH 369
BLAST of CV884337 vs. ExPASy Swiss-Prot
Match: ODBB_BOVIN (2-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Bos taurus GN=BCKDHB PE=1 SV=2) HSP 1 Score: 77.7962 bits (190), Expect = 8.691e-14 Identity = 43/112 (38.39%), Postives = 68/112 (60.71%), Query Frame = -3 Query: 461 LPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKE-GISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPY 793 +P+ +A++ +EG DVT+ A+ V + + A + ++ G+S EVI+LR+I P D T+ SV KT RL+ E G +EI ++V EE F L+AP+ R+ G D P P+ Sbjct: 258 IPLSQAEVIQEGSDVTLVAWGTQVHVIREVAAMAQEKLGVSCEVIDLRTILPWDVDTVCKSVIKTGRLLVSHEAPLTGGFASEISSTVQEECFLNLEAPISRVCGYDTPFPH 369
BLAST of CV884337 vs. ExPASy Swiss-Prot
Match: ODBB_RAT (2-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Rattus norvegicus GN=Bckdhb PE=1 SV=3) HSP 1 Score: 77.411 bits (189), Expect = 1.135e-13 Identity = 43/112 (38.39%), Postives = 68/112 (60.71%), Query Frame = -3 Query: 461 LPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKE-GISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPY 793 +P+ +A++ +EG DVT+ A+ V + + A + ++ G+S EVI+LR+I P D T+ SV KT RL+ E G +EI ++V EE F L+AP+ R+ G D P P+ Sbjct: 256 IPLSQAEVIQEGSDVTLVAWGTQVHVIREVASMAQEKLGVSCEVIDLRTIVPWDVDTVCKSVIKTGRLLISHEAPLTGGFASEISSTVQEECFLNLEAPISRVCGYDTPFPH 367
BLAST of CV884337 vs. ExPASy Swiss-Prot
Match: ODBB_MOUSE (2-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Mus musculus GN=Bckdhb PE=2 SV=2) HSP 1 Score: 77.411 bits (189), Expect = 1.135e-13 Identity = 43/112 (38.39%), Postives = 68/112 (60.71%), Query Frame = -3 Query: 461 LPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKE-GISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPY 793 +P+ +A++ +EG DVT+ A+ V + + A + ++ G+S EVI+LR+I P D T+ SV KT RL+ E G +EI ++V EE F L+AP+ R+ G D P P+ Sbjct: 256 IPLSQAEVIQEGSDVTLVAWGTQVHVIREVASMAQEKLGVSCEVIDLRTIVPWDVDTVCKSVIKTGRLLISHEAPLTGGFASEISSTVQEECFLNLEAPISRVCGYDTPFPH 367
BLAST of CV884337 vs. ExPASy Swiss-Prot
Match: DXS_THERP (1-deoxy-D-xylulose-5-phosphate synthase OS=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) GN=dxs PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.482e-13 Identity = 57/147 (38.78%), Postives = 77/147 (52.38%), Query Frame = -3 Query: 416 LLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYA--ANLERMAVPQVEDI 850 L Y V +L LPIG+A++ REG DV I A V + +AA+ILA+ GI A VIN R ++PLDRS I + R+ LVTVEE G G+ + ++ + L PV R+ AD +A A+L R A E I Sbjct: 464 LRYPRGSGVGVPMLGEPRVLPIGRAELLREGSDVAIVALGATVLPAERAADILAERGIRATVINARFVKPLDRSLILDAARECGCLVTVEEAQLAGGFGSAVLETLADAG---LLIPVLRLGLADRFFDHASQASLRRQAGIDAESI 607
BLAST of CV884337 vs. ExPASy Swiss-Prot
Match: DXS_SYNS9 (1-deoxy-D-xylulose-5-phosphate synthase OS=Synechococcus sp. (strain CC9902) GN=dxs PE=3 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 2.529e-13 Identity = 42/112 (37.50%), Postives = 67/112 (59.82%), Query Frame = -3 Query: 458 LPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYA 793 LPIG+ ++ REG D+ I A+ +V +++ A +L G+SA VIN R +RPLD++ I+ R+ R+VT+EEG G GA + S+ + ++ PV RI D + +A Sbjct: 493 LPIGRGELLREGNDLVIVAYGSMVAPAMETAALLEASGLSASVINARFLRPLDQALIHPLARRVPRVVTMEEGTLSGGFGAAVLESLNDHD---INVPVLRIGIPDQLVDHA 601
BLAST of CV884337 vs. ExPASy Swiss-Prot
Match: DXS_SYNP2 (1-deoxy-D-xylulose-5-phosphate synthase OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=dxs PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 3.302e-13 Identity = 46/135 (34.07%), Postives = 73/135 (54.07%), Query Frame = -3 Query: 404 LPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAANLERMAV-----PQVEDIVRAA 793 LPIGK +I R G D+ + + +V +L+ AEIL++ GISA VIN R ++PLD I ++ ++ T EEG G G+ +C ++ + + PV+R DV + +A E A Q+ + +RAA Sbjct: 494 LPIGKGEILRNGDDILLIGYGAMVHSTLQVAEILSEHGISATVINARFVKPLDSELIAPLAKQIGKVATFEEGCLMGGFGSAVCEALQDHD---VLVPVKRFGIGDVLVDHATPAESKAAHGLTPAQMAESIRAA 625
BLAST of CV884337 vs. ExPASy Swiss-Prot
Match: DXS_SYNJB (1-deoxy-D-xylulose-5-phosphate synthase OS=Synechococcus sp. GN=dxs PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 3.302e-13 Identity = 46/119 (38.66%), Postives = 69/119 (57.98%), Query Frame = -3 Query: 437 LPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAANLERMA 793 LPIGKA++ R G +V I A+ +V SL+AAEIL + GISA V+N R +PLD I ++ +VTVEEG G G+ + ++++ L P+ R+ DV + +A E +A Sbjct: 499 LPIGKAEVLRSGGEVLILAYGSMVHPSLQAAEILKEHGISATVVNARFAKPLDTELILPLAEQSRLVVTVEEGCLMGGFGSAVAEALLDAD---LAVPLLRLGVPDVWVEHATPEESLA 614 The following BLAST results are available for this feature:
BLAST of CV884337 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 83
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Sequences
The
following sequences are available for this feature:
EST sequence >CV884337 ID=CV884337; Name=CV884337; organism=Citrus sinensis; type=EST; length=858bpback to top |