CV884337

Overview
NameCV884337
Unique NameCV884337
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length858
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11173 contig Csv1_Contig11173:729..1586. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884337 vs. ExPASy Swiss-Prot
Match: ODBB_DICDI (2-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Dictyostelium discoideum GN=bkdB PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.210e-17
Identity = 51/130 (39.23%), Postives = 79/130 (60.77%), Query Frame = -3
Query:  431 EVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKE-GISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAANLERMAVP 817
            EV    + +P+GKA+I +EGKD+TI  +   + + L+A  +  ++ GIS E+I+LR+I+P D  T+  SV+KT R+V   E     G  AEI A++ E  F +L+AP++R+ G D P P     E+  VP
Sbjct:  228 EVPIGDYEIPLGKARIVKEGKDITIIGWGAQMRVLLQAVNMAEEKLGISCELIDLRTIQPWDVETVVESVKKTGRVVISHEAPKTGGWAAEISATIQERCFLHLEAPIQRVCGYDTPFPLI--FEKFYVP 355          
BLAST of CV884337 vs. ExPASy Swiss-Prot
Match: DXS_DESAP (1-deoxy-D-xylulose-5-phosphate synthase OS=Desulforudis audaxviator (strain MP104C) GN=dxs PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.751e-14
Identity = 44/113 (38.94%), Postives = 68/113 (60.18%), Query Frame = -3
Query:  455 LPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAA 793
            LPIG+A++ REG D+T+ A   +V  ++KAAEILA+ GI A V+N R ++PLD   I    R+T RL+T+EE     G G+ +   ++ +  +  D  V+ I   DV + + A
Sbjct:  487 LPIGRAEVLREGDDITLIAIGNMVPTAVKAAEILAERGIEASVVNARFVKPLDEKCICHYARRTGRLITLEENVIAGGFGSAVQELLVAKGLT--DVRVQLIGLPDVFIEHGA 597          
BLAST of CV884337 vs. ExPASy Swiss-Prot
Match: ODBB_HUMAN (2-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Homo sapiens GN=BCKDHB PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.987e-14
Identity = 49/121 (40.50%), Postives = 72/121 (59.50%), Query Frame = -3
Query:  461 EVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKE--GISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPY 817
            EV    + +P+ +A++ +EG DVT+ A+   V +  + A  +AKE  G+S EVI+LR+I P D  TI  SV KT RL+   E     G  +EI ++V EE F  L+AP+ R+ G D P P+
Sbjct:  250 EVPIEPYNIPLSQAEVIQEGSDVTLVAWGTQVHVIREVAS-MAKEKLGVSCEVIDLRTIIPWDVDTICKSVIKTGRLLISHEAPLTGGFASEISSTVQEECFLNLEAPISRVCGYDTPFPH 369          
BLAST of CV884337 vs. ExPASy Swiss-Prot
Match: ODBB_BOVIN (2-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Bos taurus GN=BCKDHB PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 8.691e-14
Identity = 43/112 (38.39%), Postives = 68/112 (60.71%), Query Frame = -3
Query:  461 LPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKE-GISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPY 793
            +P+ +A++ +EG DVT+ A+   V +  + A +  ++ G+S EVI+LR+I P D  T+  SV KT RL+   E     G  +EI ++V EE F  L+AP+ R+ G D P P+
Sbjct:  258 IPLSQAEVIQEGSDVTLVAWGTQVHVIREVAAMAQEKLGVSCEVIDLRTILPWDVDTVCKSVIKTGRLLVSHEAPLTGGFASEISSTVQEECFLNLEAPISRVCGYDTPFPH 369          
BLAST of CV884337 vs. ExPASy Swiss-Prot
Match: ODBB_RAT (2-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Rattus norvegicus GN=Bckdhb PE=1 SV=3)

HSP 1 Score: 77.411 bits (189), Expect = 1.135e-13
Identity = 43/112 (38.39%), Postives = 68/112 (60.71%), Query Frame = -3
Query:  461 LPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKE-GISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPY 793
            +P+ +A++ +EG DVT+ A+   V +  + A +  ++ G+S EVI+LR+I P D  T+  SV KT RL+   E     G  +EI ++V EE F  L+AP+ R+ G D P P+
Sbjct:  256 IPLSQAEVIQEGSDVTLVAWGTQVHVIREVASMAQEKLGVSCEVIDLRTIVPWDVDTVCKSVIKTGRLLISHEAPLTGGFASEISSTVQEECFLNLEAPISRVCGYDTPFPH 367          
BLAST of CV884337 vs. ExPASy Swiss-Prot
Match: ODBB_MOUSE (2-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Mus musculus GN=Bckdhb PE=2 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 1.135e-13
Identity = 43/112 (38.39%), Postives = 68/112 (60.71%), Query Frame = -3
Query:  461 LPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKE-GISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPY 793
            +P+ +A++ +EG DVT+ A+   V +  + A +  ++ G+S EVI+LR+I P D  T+  SV KT RL+   E     G  +EI ++V EE F  L+AP+ R+ G D P P+
Sbjct:  256 IPLSQAEVIQEGSDVTLVAWGTQVHVIREVASMAQEKLGVSCEVIDLRTIVPWDVDTVCKSVIKTGRLLISHEAPLTGGFASEISSTVQEECFLNLEAPISRVCGYDTPFPH 367          
BLAST of CV884337 vs. ExPASy Swiss-Prot
Match: DXS_THERP (1-deoxy-D-xylulose-5-phosphate synthase OS=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) GN=dxs PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.482e-13
Identity = 57/147 (38.78%), Postives = 77/147 (52.38%), Query Frame = -3
Query:  416 LLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYA--ANLERMAVPQVEDI 850
            L Y     V   +L     LPIG+A++ REG DV I A    V  + +AA+ILA+ GI A VIN R ++PLDRS I  + R+   LVTVEE     G G+ +  ++ +     L  PV R+  AD    +A  A+L R A    E I
Sbjct:  464 LRYPRGSGVGVPMLGEPRVLPIGRAELLREGSDVAIVALGATVLPAERAADILAERGIRATVINARFVKPLDRSLILDAARECGCLVTVEEAQLAGGFGSAVLETLADAG---LLIPVLRLGLADRFFDHASQASLRRQAGIDAESI 607          
BLAST of CV884337 vs. ExPASy Swiss-Prot
Match: DXS_SYNS9 (1-deoxy-D-xylulose-5-phosphate synthase OS=Synechococcus sp. (strain CC9902) GN=dxs PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.529e-13
Identity = 42/112 (37.50%), Postives = 67/112 (59.82%), Query Frame = -3
Query:  458 LPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYA 793
            LPIG+ ++ REG D+ I A+  +V  +++ A +L   G+SA VIN R +RPLD++ I+   R+  R+VT+EEG    G GA +  S+ +     ++ PV RI   D  + +A
Sbjct:  493 LPIGRGELLREGNDLVIVAYGSMVAPAMETAALLEASGLSASVINARFLRPLDQALIHPLARRVPRVVTMEEGTLSGGFGAAVLESLNDHD---INVPVLRIGIPDQLVDHA 601          
BLAST of CV884337 vs. ExPASy Swiss-Prot
Match: DXS_SYNP2 (1-deoxy-D-xylulose-5-phosphate synthase OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=dxs PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.302e-13
Identity = 46/135 (34.07%), Postives = 73/135 (54.07%), Query Frame = -3
Query:  404 LPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAANLERMAV-----PQVEDIVRAA 793
            LPIGK +I R G D+ +  +  +V  +L+ AEIL++ GISA VIN R ++PLD   I    ++  ++ T EEG    G G+ +C ++ +     +  PV+R    DV + +A   E  A       Q+ + +RAA
Sbjct:  494 LPIGKGEILRNGDDILLIGYGAMVHSTLQVAEILSEHGISATVINARFVKPLDSELIAPLAKQIGKVATFEEGCLMGGFGSAVCEALQDHD---VLVPVKRFGIGDVLVDHATPAESKAAHGLTPAQMAESIRAA 625          
BLAST of CV884337 vs. ExPASy Swiss-Prot
Match: DXS_SYNJB (1-deoxy-D-xylulose-5-phosphate synthase OS=Synechococcus sp. GN=dxs PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.302e-13
Identity = 46/119 (38.66%), Postives = 69/119 (57.98%), Query Frame = -3
Query:  437 LPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAANLERMA 793
            LPIGKA++ R G +V I A+  +V  SL+AAEIL + GISA V+N R  +PLD   I     ++  +VTVEEG    G G+ +  ++++     L  P+ R+   DV + +A   E +A
Sbjct:  499 LPIGKAEVLRSGGEVLILAYGSMVHPSLQAAEILKEHGISATVVNARFAKPLDTELILPLAEQSRLVVTVEEGCLMGGFGSAVAEALLDAD---LAVPLLRLGVPDVWVEHATPEESLA 614          
The following BLAST results are available for this feature:
BLAST of CV884337 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
ODBB_DICDI2.210e-1739.232-oxoisovalerate dehydrogenase subunit beta, mitoc... [more]
DXS_DESAP1.751e-1438.941-deoxy-D-xylulose-5-phosphate synthase OS=Desulfo... [more]
ODBB_HUMAN2.987e-1440.502-oxoisovalerate dehydrogenase subunit beta, mitoc... [more]
ODBB_BOVIN8.691e-1438.392-oxoisovalerate dehydrogenase subunit beta, mitoc... [more]
ODBB_RAT1.135e-1338.392-oxoisovalerate dehydrogenase subunit beta, mitoc... [more]
ODBB_MOUSE1.135e-1338.392-oxoisovalerate dehydrogenase subunit beta, mitoc... [more]
DXS_THERP1.482e-1338.781-deoxy-D-xylulose-5-phosphate synthase OS=Thermom... [more]
DXS_SYNS92.529e-1337.501-deoxy-D-xylulose-5-phosphate synthase OS=Synecho... [more]
DXS_SYNP23.302e-1334.071-deoxy-D-xylulose-5-phosphate synthase OS=Synecho... [more]
DXS_SYNJB3.302e-1338.661-deoxy-D-xylulose-5-phosphate synthase OS=Synecho... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_002G06_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_002_T7_G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884337 ID=CV884337; Name=CV884337; organism=Citrus sinensis; type=EST; length=858bp
CATCAATTTATTATTTCTGTAATCCCACATCACCTTCTCTTTTCTCACAG
TGACAATACAATTATCAAAAATCCGAAGAAAGAATTCAAACGACTCAGAT
TCACGCACCATTTAATGAAATATCATGGAACTGACAAAACTTGTAGCAGT
ACATTGATAATCAAACAATAAAACTCTGGTTTCTTGTTGATTTTCCACAT
TAACAAGAGAAAACTGAGCCACAAAATTTCCTGCTGTCATCAACAATCTC
CAATTATTTCATGATCAATTCCCCCAAAAAAGTGTTGAGAATGGGAAAAA
TGTACAATCCCTCTATTGTTCCAGGATCTGACAAAGCTTCAGGGCAGAAT
CAGTTCTTTTATGCTGCAGCAGCCATTGGCACAGATCTGTAGCATGCTCT
CTTGGCAGCTCGGACAATATCTTCAACCTGTGGGACAGCCATTCTCTCAA
GATTGGCTGCATATGGCATTGGAACATCAGCTCCAGCAATTCTCTCAACT
GGTGCATCAAGATAACTGAAGCTTTCCTCAATAACGGATGCACAGATTTC
GGCACCAACTCCATGCTGAGGGAACCCTTCTTCAACTGTTACCAGTCTGT
TAGTTTTTCTGACAGAAGCATTGATTGTGGATCTATCTAGTGGCCTAATT
GACCGCAGATTGATAACCTCAGCACTTATTCCTTCCTTTGCAAGTATCTC
AGCCGCCTTGAGTGAAAGGCCCACAATTTTTGAGAAAGCTGTAATGGTTA
CATCCTTTCCTTCTCTCTCAATTTTAGCTTTCCCAATTGGAAGGCAAAAA
CTGGAATCAAGAACTTCAGCTGATACCGGGAATGACTCACCATATAACAA
CTCATTTT
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