CV884337

Overview
NameCV884337
Unique NameCV884337
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length858
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11173 contig Csv1_Contig11173:729..1586. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884337 vs. ExPASy Swiss-Prot
Match: DXS_PELTS (1-deoxy-D-xylulose-5-phosphate synthase OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=dxs PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.313e-13
Identity = 40/100 (40.00%), Postives = 60/100 (60.00%), Query Frame = -3
Query:  545 YGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEI 844
            Y  S      + DS   +P+G+A++ R+G +VT+ A   +V L++KAAEILA  GI A VIN R ++PLD+  I    R+T  + T+EE   Q G G+ +
Sbjct:  471 YPRSAGTGCRMDDSFKIIPLGRAEVLRDGTEVTLLAVGSMVCLAVKAAEILAGHGIDAAVINARFVKPLDKECILRYARRTREVFTLEENVLQGGFGSAV 570          
BLAST of CV884337 vs. ExPASy Swiss-Prot
Match: DXS_SYNPX (1-deoxy-D-xylulose-5-phosphate synthase OS=Synechococcus sp. (strain WH8102) GN=dxs PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.633e-13
Identity = 48/134 (35.82%), Postives = 72/134 (53.73%), Query Frame = -3
Query:  410 LPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGAD------VPMPYAANLERMAVPQVEDIVR 793
            LPIG+ ++ REG D+ I A+  +V  +L  A +L + G+S  VIN R +RPLD++ I+   R+  R+VT+EEG    G GA +  S+ ++  S    P+ RI   D       P     +LE + V   E I R
Sbjct:  493 LPIGRGELLREGDDLLIVAYGSMVHPALDTATLLEEAGLSTTVINARFLRPLDQALIHPLARRIRRVVTMEEGALAGGFGAAVLESLSDQDIS---IPLLRIGIPDKMVDHATPQQSKESLEMIPVQMAERIRR 623          
BLAST of CV884337 vs. ExPASy Swiss-Prot
Match: DXS_HELMI (1-deoxy-D-xylulose-5-phosphate synthase OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=dxs PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.633e-13
Identity = 37/83 (44.58%), Postives = 55/83 (66.27%), Query Frame = -3
Query:  545 LPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEI 793
            +PIG+ ++ R+G DVTI A   +VG++ +AA++L  EGI A V+N R ++PLD+  I    R+T R+VTVEE     G G+ I
Sbjct:  489 VPIGRGELLRQGSDVTIVAIGAMVGIAEEAADLLEAEGIRAAVVNARFVKPLDKELIIKQARETGRIVTVEEHVLAGGFGSAI 571          
BLAST of CV884337 vs. ExPASy Swiss-Prot
Match: DXS_ANAVT (1-deoxy-D-xylulose-5-phosphate synthase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=dxs PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.633e-13
Identity = 46/119 (38.66%), Postives = 68/119 (57.14%), Query Frame = -3
Query:  437 LPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAANLERMA 793
            L IGK +I R G DV I  +  +V  S++AAEIL++ GI A VIN R ++PLD   I    +K  R+VT+EEG    G G+ +  ++++     +  PV+RI   DV + +A   E  A
Sbjct:  494 LEIGKGEILRNGDDVLIIGYGTMVYPSMQAAEILSEHGIEATVINARFVKPLDTELIVPLAQKIGRVVTLEEGCVMGGFGSAVAEALLDAD---VVVPVKRIGIPDVLVEHATPDESKA 609          
BLAST of CV884337 vs. ExPASy Swiss-Prot
Match: DXS_ANASP (1-deoxy-D-xylulose-5-phosphate synthase OS=Anabaena sp. (strain PCC 7120) GN=dxs PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.633e-13
Identity = 46/119 (38.66%), Postives = 68/119 (57.14%), Query Frame = -3
Query:  437 LPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAANLERMA 793
            L IGK +I R G DV I  +  +V  S++AAEIL++ GI A VIN R ++PLD   I    +K  R+VT+EEG    G G+ +  ++++     +  PV+RI   DV + +A   E  A
Sbjct:  494 LEIGKGEILRNGDDVLIIGYGTMVYPSMQAAEILSEHGIEATVINARFVKPLDTELIVPLAQKIGRVVTLEEGCVMGGFGSAVAEALLDAD---VVVPVKRIGIPDVLVEHATPDESKA 609          
BLAST of CV884337 vs. ExPASy Swiss-Prot
Match: DXS_DESHY (1-deoxy-D-xylulose-5-phosphate synthase OS=Desulfitobacterium hafniense (strain Y51) GN=dxs PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.357e-13
Identity = 46/121 (38.02%), Postives = 66/121 (54.55%), Query Frame = -3
Query:  488 LLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERI 850
            L Y  S     E+ +    LP+GKA+I +EGKD+T+     +V   L AA  L   G+ A VINLR I PLDR +I    R T R++TVE+     G+G+ +   + +E  +  D  VER+
Sbjct:  469 LRYPRSVGQGVELTEELRELPVGKAEILQEGKDITLIGVGPMVYTCLAAAVELRHRGVEATVINLRYINPLDRESILRYARMTKRIITVEDHMLAGGMGSAVMEVLGDEGLT--DVVVERL 587          
BLAST of CV884337 vs. ExPASy Swiss-Prot
Match: DXS_DESHD (1-deoxy-D-xylulose-5-phosphate synthase OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=dxs PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.357e-13
Identity = 46/121 (38.02%), Postives = 66/121 (54.55%), Query Frame = -3
Query:  488 LLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERI 850
            L Y  S     E+ +    LP+GKA+I +EGKD+T+     +V   L AA  L   G+ A VINLR I PLDR +I    R T R++TVE+     G+G+ +   + +E  +  D  VER+
Sbjct:  469 LRYPRSVGQGVELTEELRELPVGKAEILQEGKDITLIGVGPMVYTCLAAAVELRHRGVEATVINLRYINPLDRESILRYARMTKRIITVEDHMLAGGMGSAVMEVLGDEGLT--DVVVERL 587          
BLAST of CV884337 vs. ExPASy Swiss-Prot
Match: ODPB_MYCGE (Pyruvate dehydrogenase E1 component subunit beta OS=Mycoplasma genitalium GN=pdhB PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.255e-12
Identity = 44/122 (36.07%), Postives = 70/122 (57.38%), Query Frame = -3
Query:  458 EVLDSSFCLPIGKAKIEREGKDVTITAFSKIVG--LSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYA 817
            E+    + +PIG+A +  EG ++TI ++   +   ++L  +  L  +GI  E+I+LR+I P D+ T+  SV+KT RL+ V E        AEI  SV EE F+YL    +R+ G D+ +P A
Sbjct:  185 EIPSDYYTVPIGEANLISEGSELTIVSYGPTMFDLINLVYSGELKDKGI--ELIDLRTISPWDKQTVFNSVKKTGRLLVVTEAVKSFTTSAEIITSVTEELFTYLKKAPQRVTGFDIVVPLA 304          
BLAST of CV884337 vs. ExPASy Swiss-Prot
Match: DXS_SYNSC (1-deoxy-D-xylulose-5-phosphate synthase OS=Synechococcus sp. (strain CC9605) GN=dxs PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.255e-12
Identity = 40/109 (36.70%), Postives = 65/109 (59.63%), Query Frame = -3
Query:  515 GESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFS 841
            GE  P+  E  ++   LPIG+ ++ REG D+ I A+  +V  +L  A +L + G+S  VIN R +RPLD++ I+   R+  R+VT+EEG    G GA +  S+ ++  +
Sbjct:  480 GEGVPLMEEGWET---LPIGRGELLREGDDLMIVAYGSMVAPALATATLLEEAGLSTTVINARFLRPLDQALIHPLARRIPRVVTMEEGALPGGFGAAVLESLTDQDIN 585          
BLAST of CV884337 vs. ExPASy Swiss-Prot
Match: DXS_NOSP7 (1-deoxy-D-xylulose-5-phosphate synthase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=dxs PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.639e-12
Identity = 43/112 (38.39%), Postives = 66/112 (58.93%), Query Frame = -3
Query:  458 LPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYA 793
            L IGK++I R G DV I A+  +V   ++AAEIL++ GI A VIN R ++PLD   I    +K  R++T+EEG    G G+ I  ++++     +  PV+R    DV + +A
Sbjct:  494 LEIGKSEILRTGDDVLIVAYGTMVYPGMQAAEILSEHGIEATVINARFVKPLDTELILPLAKKIGRVITLEEGCIMGGFGSAIAEALMDAD---ILVPVKRFGVPDVLVDHA 602          
The following BLAST results are available for this feature:
BLAST of CV884337 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
DXS_PELTS4.313e-1340.001-deoxy-D-xylulose-5-phosphate synthase OS=Pelotom... [more]
DXS_SYNPX5.633e-1335.821-deoxy-D-xylulose-5-phosphate synthase OS=Synecho... [more]
DXS_HELMI5.633e-1344.581-deoxy-D-xylulose-5-phosphate synthase OS=Helioba... [more]
DXS_ANAVT5.633e-1338.661-deoxy-D-xylulose-5-phosphate synthase OS=Anabaen... [more]
DXS_ANASP5.633e-1338.661-deoxy-D-xylulose-5-phosphate synthase OS=Anabaen... [more]
DXS_DESHY7.357e-1338.021-deoxy-D-xylulose-5-phosphate synthase OS=Desulfi... [more]
DXS_DESHD7.357e-1338.021-deoxy-D-xylulose-5-phosphate synthase OS=Desulfi... [more]
ODPB_MYCGE1.255e-1236.07Pyruvate dehydrogenase E1 component subunit beta O... [more]
DXS_SYNSC1.255e-1236.701-deoxy-D-xylulose-5-phosphate synthase OS=Synecho... [more]
DXS_NOSP71.639e-1238.391-deoxy-D-xylulose-5-phosphate synthase OS=Nostoc ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_002G06_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_002_T7_G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884337 ID=CV884337; Name=CV884337; organism=Citrus sinensis; type=EST; length=858bp
CATCAATTTATTATTTCTGTAATCCCACATCACCTTCTCTTTTCTCACAG
TGACAATACAATTATCAAAAATCCGAAGAAAGAATTCAAACGACTCAGAT
TCACGCACCATTTAATGAAATATCATGGAACTGACAAAACTTGTAGCAGT
ACATTGATAATCAAACAATAAAACTCTGGTTTCTTGTTGATTTTCCACAT
TAACAAGAGAAAACTGAGCCACAAAATTTCCTGCTGTCATCAACAATCTC
CAATTATTTCATGATCAATTCCCCCAAAAAAGTGTTGAGAATGGGAAAAA
TGTACAATCCCTCTATTGTTCCAGGATCTGACAAAGCTTCAGGGCAGAAT
CAGTTCTTTTATGCTGCAGCAGCCATTGGCACAGATCTGTAGCATGCTCT
CTTGGCAGCTCGGACAATATCTTCAACCTGTGGGACAGCCATTCTCTCAA
GATTGGCTGCATATGGCATTGGAACATCAGCTCCAGCAATTCTCTCAACT
GGTGCATCAAGATAACTGAAGCTTTCCTCAATAACGGATGCACAGATTTC
GGCACCAACTCCATGCTGAGGGAACCCTTCTTCAACTGTTACCAGTCTGT
TAGTTTTTCTGACAGAAGCATTGATTGTGGATCTATCTAGTGGCCTAATT
GACCGCAGATTGATAACCTCAGCACTTATTCCTTCCTTTGCAAGTATCTC
AGCCGCCTTGAGTGAAAGGCCCACAATTTTTGAGAAAGCTGTAATGGTTA
CATCCTTTCCTTCTCTCTCAATTTTAGCTTTCCCAATTGGAAGGCAAAAA
CTGGAATCAAGAACTTCAGCTGATACCGGGAATGACTCACCATATAACAA
CTCATTTT
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