CV884337

Overview
NameCV884337
Unique NameCV884337
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length858
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11173 contig Csv1_Contig11173:729..1586. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884337 vs. ExPASy Swiss-Prot
Match: DXS_CYAP4 (1-deoxy-D-xylulose-5-phosphate synthase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=dxs PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.639e-12
Identity = 43/112 (38.39%), Postives = 67/112 (59.82%), Query Frame = -3
Query:  458 LPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYA 793
            LPIGKA++ R+G D+ + A+  +V  +L+AAEIL + GI+A V+N R  +PLD   I     K  R+VTVEEG    G G+ +  ++ ++    +  PV RI   D+ + +A
Sbjct:  492 LPIGKAEVLRQGDDLLMLAYGSMVYPTLQAAEILREHGIAATVVNARFAKPLDTELILPLAEKLGRVVTVEEGCLIGGFGSAVLEALQDQE---ILVPVTRIGIPDILVEHA 600          
BLAST of CV884337 vs. ExPASy Swiss-Prot
Match: ODPB_MYCPN (Pyruvate dehydrogenase E1 component subunit beta OS=Mycoplasma pneumoniae GN=pdhB PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.651e-12
Identity = 44/122 (36.07%), Postives = 70/122 (57.38%), Query Frame = -3
Query:  458 EVLDSSFCLPIGKAKIEREGKDVTITAFSKIVG--LSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYA 817
            E+    + +PIG+A +  +G ++TI ++   +   +++     L  +GI  E+I+LR+I P D+ T+  SV+KT RL+ V E         EI ASV EE FSYL A  +R+ G D+ +P A
Sbjct:  186 EIPADYYTVPIGQANLISQGNNLTIVSYGPTMFDLINMVYGGELKDKGI--ELIDLRTISPWDKETVFNSVKKTGRLLVVTEAAKTFTTSGEIIASVTEELFSYLKAAPQRVTGWDIVVPLA 305          
BLAST of CV884337 vs. ExPASy Swiss-Prot
Match: DXS_SYNJA (1-deoxy-D-xylulose-5-phosphate synthase OS=Synechococcus sp. (strain JA-3-3Ab) GN=dxs PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.769e-12
Identity = 43/119 (36.13%), Postives = 69/119 (57.98%), Query Frame = -3
Query:  437 LPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAANLERMA 793
            +PIGKA++ R G +V I A+  +V  SL+AAEIL + GIS  V+N R  +PLD   I    +++  +VTVEEG    G G+ +  ++++     +  P+ R+   DV + +A   E +A
Sbjct:  499 IPIGKAEVLRSGGEVLILAYGSMVHPSLQAAEILKEHGISTTVVNARFAKPLDTELILPLAQQSRLVVTVEEGCLMGGFGSAVGEALLDAD---IRVPLLRLGVPDVWVEHATPEESLA 614          
BLAST of CV884337 vs. ExPASy Swiss-Prot
Match: DXS_MICAN (1-deoxy-D-xylulose-5-phosphate synthase OS=Microcystis aeruginosa (strain NIES-843) GN=dxs PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.228e-12
Identity = 45/135 (33.33%), Postives = 72/135 (53.33%), Query Frame = -3
Query:  404 LPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAANLERMA-----VPQVEDIVRAA 793
            LPIGK +I R G D+ +  +  +V  SL+ AEIL++ GI A V+N R ++PLD   I    ++  ++VT+EEG    G G+ +  ++ + +   +  PV+R    D  + +A   E  A      PQ+   V AA
Sbjct:  494 LPIGKGEILRSGDDILLLGYGTMVNTSLQVAEILSEHGIEATVVNARFVKPLDTELIFPLAQRLGKVVTLEEGCLMGGFGSAVLEALQDAN---ILVPVKRFGVPDKLVDHATPEESFADLGLTSPQIAQQVLAA 625          
BLAST of CV884337 vs. ExPASy Swiss-Prot
Match: DXS_GLOVI (1-deoxy-D-xylulose-5-phosphate synthase OS=Gloeobacter violaceus GN=dxs PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.134e-12
Identity = 40/105 (38.10%), Postives = 61/105 (58.10%), Query Frame = -3
Query:  527 GESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIE 841
            G   P+ AE  D    +PIGKA++ R G D+ I A   +V  SL+AA +L++ GI A V+N R  +PLD   +    R+  R+VTVEEG    G G+ +  ++++
Sbjct:  483 GSGAPLMAEGWDP---VPIGKAEVLRSGDDLLIVAIGTMVHPSLQAAALLSEHGIDATVVNARFAKPLDTELLLPLARRIGRVVTVEEGCRMGGFGSAVLEALMD 584          
BLAST of CV884337 vs. ExPASy Swiss-Prot
Match: DXS_CYAP7 (1-deoxy-D-xylulose-5-phosphate synthase OS=Cyanothece sp. (strain PCC 7424) GN=dxs PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.134e-12
Identity = 39/119 (32.77%), Postives = 67/119 (56.30%), Query Frame = -3
Query:  437 LPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAANLERMA 793
            LPIGK +I R G D+ +  +  +V  +++ AEIL + GI A V+N R ++PLD   I    ++T ++VT+EEG    G G+ +  ++++ +   +  PV+R    D  + +A   E  A
Sbjct:  493 LPIGKGEILRNGDDLLLLGYGTMVNTAMQVAEILGEHGIEATVVNARFVKPLDTDLIVPLAKQTGKVVTLEEGCLMGGFGSAVAEALLDHN---VLVPVKRFGVPDQLVDHAKPDESFA 608          
BLAST of CV884337 vs. ExPASy Swiss-Prot
Match: DXS_LYSSC (1-deoxy-D-xylulose-5-phosphate synthase OS=Lysinibacillus sphaericus (strain C3-41) GN=dxs PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.062e-11
Identity = 38/125 (30.40%), Postives = 68/125 (54.40%), Query Frame = -3
Query:  476 LLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGAD 850
            L Y     +   + D    LPIG  ++ REGKD +I  F   + ++++AA++LA++GI  EV+N R I+P+D+  ++  +     ++T+EE   + G G+ +          YL+A V+R+   D
Sbjct:  471 LRYPRGNGIGVPLDDELVALPIGSWEVLREGKDASILTFGTTIPMAMQAADMLAQQGIDIEVVNARFIKPMDKDMLHRILSNHKPILTIEEAVLKGGFGSGVLE--FAHDHGYLNAIVDRMGIPD 593          
BLAST of CV884337 vs. ExPASy Swiss-Prot
Match: DXS1_GEOMG (1-deoxy-D-xylulose-5-phosphate synthase 1 OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=dxs1 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.388e-11
Identity = 40/93 (43.01%), Postives = 52/93 (55.91%), Query Frame = -3
Query:  515 LPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFS 793
            LPIGK +I REG D  + A    V  + +AAE LA EGI   V+N R ++PLDR  I +  R T RL+ VEE   Q G G  +   + EE  +
Sbjct:  490 LPIGKGEILREGLDGALLAIGSTVYPAREAAEALAAEGIDLAVVNARFVKPLDRDLILSLARTTGRLIIVEENVIQGGFGTAVLELLEEEGIN 582          
BLAST of CV884337 vs. ExPASy Swiss-Prot
Match: DXS_SYNS3 (1-deoxy-D-xylulose-5-phosphate synthase OS=Synechococcus sp. (strain CC9311) GN=dxs PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.367e-11
Identity = 43/122 (35.25%), Postives = 67/122 (54.92%), Query Frame = -3
Query:  476 GESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGAD 841
            GE  P+  E  ++   LPIG  ++ REG DV I A+  +V  ++  A+ LA  G+   VIN R +RPLD + I+   ++  ++VT+EEG    G G+ +  S+ E+    L  P+ RI   D
Sbjct:  480 GEGVPLMEEGWEA---LPIGCGEVVREGNDVLIVAYGAMVPKAMATAKCLAAVGVEVAVINARYLRPLDEALIHPMAKQIGKIVTMEEGALAGGFGSAVLESLQEKG---LAIPMLRIGIPD 595          
BLAST of CV884337 vs. ExPASy Swiss-Prot
Match: DXS_PROMP (1-deoxy-D-xylulose-5-phosphate synthase OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=dxs PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.037e-11
Identity = 43/113 (38.05%), Postives = 64/113 (56.64%), Query Frame = -3
Query:  455 LPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAA 793
            L IG+ +I  EG DV I A+  +V  + + A +L   GISA +IN R +RPLD+  I   VRK  ++VT+EEG    G G+ I   + +     ++ PV RI   DV + +A+
Sbjct:  493 LKIGEGEILEEGDDVLIIAYGSMVQSATETANLLKNRGISACIINARFVRPLDQDLIIPLVRKLKKVVTMEEGTLVGGFGSAIVEMLNDND---INIPVLRIGIPDVLVDHAS 602          
The following BLAST results are available for this feature:
BLAST of CV884337 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
DXS_CYAP41.639e-1238.391-deoxy-D-xylulose-5-phosphate synthase OS=Cyanoth... [more]
ODPB_MYCPN3.651e-1236.07Pyruvate dehydrogenase E1 component subunit beta O... [more]
DXS_SYNJA4.769e-1236.131-deoxy-D-xylulose-5-phosphate synthase OS=Synecho... [more]
DXS_MICAN6.228e-1233.331-deoxy-D-xylulose-5-phosphate synthase OS=Microcy... [more]
DXS_GLOVI8.134e-1238.101-deoxy-D-xylulose-5-phosphate synthase OS=Gloeoba... [more]
DXS_CYAP78.134e-1232.771-deoxy-D-xylulose-5-phosphate synthase OS=Cyanoth... [more]
DXS_LYSSC1.062e-1130.401-deoxy-D-xylulose-5-phosphate synthase OS=Lysinib... [more]
DXS1_GEOMG1.388e-1143.011-deoxy-D-xylulose-5-phosphate synthase 1 OS=Geoba... [more]
DXS_SYNS32.367e-1135.251-deoxy-D-xylulose-5-phosphate synthase OS=Synecho... [more]
DXS_PROMP4.037e-1138.051-deoxy-D-xylulose-5-phosphate synthase OS=Prochlo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_002G06_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_002_T7_G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884337 ID=CV884337; Name=CV884337; organism=Citrus sinensis; type=EST; length=858bp
CATCAATTTATTATTTCTGTAATCCCACATCACCTTCTCTTTTCTCACAG
TGACAATACAATTATCAAAAATCCGAAGAAAGAATTCAAACGACTCAGAT
TCACGCACCATTTAATGAAATATCATGGAACTGACAAAACTTGTAGCAGT
ACATTGATAATCAAACAATAAAACTCTGGTTTCTTGTTGATTTTCCACAT
TAACAAGAGAAAACTGAGCCACAAAATTTCCTGCTGTCATCAACAATCTC
CAATTATTTCATGATCAATTCCCCCAAAAAAGTGTTGAGAATGGGAAAAA
TGTACAATCCCTCTATTGTTCCAGGATCTGACAAAGCTTCAGGGCAGAAT
CAGTTCTTTTATGCTGCAGCAGCCATTGGCACAGATCTGTAGCATGCTCT
CTTGGCAGCTCGGACAATATCTTCAACCTGTGGGACAGCCATTCTCTCAA
GATTGGCTGCATATGGCATTGGAACATCAGCTCCAGCAATTCTCTCAACT
GGTGCATCAAGATAACTGAAGCTTTCCTCAATAACGGATGCACAGATTTC
GGCACCAACTCCATGCTGAGGGAACCCTTCTTCAACTGTTACCAGTCTGT
TAGTTTTTCTGACAGAAGCATTGATTGTGGATCTATCTAGTGGCCTAATT
GACCGCAGATTGATAACCTCAGCACTTATTCCTTCCTTTGCAAGTATCTC
AGCCGCCTTGAGTGAAAGGCCCACAATTTTTGAGAAAGCTGTAATGGTTA
CATCCTTTCCTTCTCTCTCAATTTTAGCTTTCCCAATTGGAAGGCAAAAA
CTGGAATCAAGAACTTCAGCTGATACCGGGAATGACTCACCATATAACAA
CTCATTTT
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